RAD9A

General Information

Gene Name       : RAD9A
Gene ID             : ENSG00000172613.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RAD9A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAD9AENSG00000172613.73.6610.627.14ENCSR000AEF
HepG2RAD9AENSG00000172613.715.918.0211.96ENCSR985KAT
K562RAD9AENSG00000172613.721.1018.3519.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAD9A is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAD9A RNA is bound by 13 proteins.  







eCLIP assay for RAD9A is not avaliable on ENCORE database.





13 proteins are bound to RAD9A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116716386967163942+3'-UTR,CDS,intron-Proximal5.429357.23718K562AQR
chr116716555167165604+3'-UTR3.802665.48330K562UPF1
chr116716386467163911+3'-UTR,CDS,intron-Proximal3.508293.98203HepG2PRPF8
chr116716365867163749+3'-UTR,CDS,intron-Proximal4.861685.40008K562SF3B4
chr116716567167165729+3'-UTR3.693247.13548K562UPF1
chr116716550667165599+3'-UTR4.532894.82934K562RBM15
chr116716520567165244+3'-UTR3.257173.07801K562UPF1
chr116716323267163294+3'-UTR,CDS,intron-Distal,intron-Proximal4.252176.36347HepG2PPIG
chr116716531767165376+3'-UTR3.979485.48330K562UPF1
chr116716538567165447+3'-UTR4.991916.42091K562UPF1
chr116716341067163491+3'-UTR,CDS4.162146.98305HepG2PPIG
chr116716102367161077+5'-UTR,CDS4.257928.19289HepG2PPIG
chr116716097667161023+5'-UTR,CDS,intron-Proximal4.212854.96634HepG2PPIG
chr116716021367160279+5'-UTR,CDS,intron-Proximal3.501157.03098HepG2EFTUD2
chr116716018467160246+5'-UTR,CDS3.499145.36861HepG2U2AF2
chr116715943967159549+5'-UTR,CDS,intron-Distal,intron-Proximal3.783427.93865HepG2NCBP2
chr116716020367160292+5'-UTR,CDS,intron-Proximal4.2002011.67840HepG2PRPF8
chr116716111267161194+CDS,intron-Distal,intron-Proximal5.377536.47067K562SF3B4
chr116716012567160199+CDS4.099697.43035HepG2EFTUD2
chr116716002967160148+CDS,intron-Proximal3.336483.23253K562SMNDC1
chr116715970067159793+CDS,intron-Distal,intron-Proximal3.822649.10472K562AQR
chr116715962967159770+CDS,intron-Distal,intron-Proximal4.183593.58172HepG2SRSF1
chr116715983467159911+intron-Distal4.206366.45252K562PRPF8
chr116716000067160053+intron-Distal,intron-Proximal3.134203.57054K562U2AF2
chr116715972567159793+intron-Distal,intron-Proximal4.539448.11292HepG2EFTUD2
chr116715971467159797+intron-Distal,intron-Proximal3.205185.97777HepG2PPIG
chr116715977267159807+intron-Distal,intron-Proximal4.562615.82303K562BUD13
chr116715971567159785+intron-Distal,intron-Proximal4.917295.20041HepG2PRPF4
chr116715983467159899+intron-Distal4.037814.75425K562EFTUD2
chr116716030967160351+intron-Proximal5.211885.96317HepG2EFTUD2
chr116716387267163929+intron-Proximal3.281203.54718K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAD9A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAD9A is not available on ENCORE database.

  • 81 RBPs can affect the levels of RAD9A.  








The Knockdown/knockout RNA-Seq assay for RAD9A is not available on ENCORE database.





81 RBPs can affect the gene expression of RAD9A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAD9AENSG00000172613.3449.10550194.675501.205909.325307.55890HepG2BCCIP
RAD9AENSG00000172613.3133.61540220.28990-0.721303.429402.58280HepG2CALR
RAD9AENSG00000172613.3137.05780205.15610-0.581902.259701.62980HepG2CPSF6
RAD9AENSG00000172613.3261.29490130.936800.996702.813701.78710HepG2YBX3
RAD9AENSG00000172613.3175.47880287.96530-0.714604.673903.87760HepG2CELF1
RAD9AENSG00000172613.3336.80540183.831300.873407.451106.44070HepG2DKC1
RAD9AENSG00000172613.387.04590156.14430-0.843003.102302.14930HepG2EIF3D
RAD9AENSG00000172613.3298.10910155.772600.936303.205702.51810HepG2EIF4A3
RAD9AENSG00000172613.3184.01300305.46570-0.731204.856703.79780HepG2EIF4G1
RAD9AENSG00000172613.3258.11520375.31340-0.540104.123103.41430HepG2ETF1
RAD9AENSG00000172613.3320.29960157.300001.025806.807105.75230HepG2FXR1
RAD9AENSG00000172613.3315.50800154.928501.026007.059205.62390HepG2G3BP2
RAD9AENSG00000172613.3165.59970102.380400.693702.325401.30270HepG2GRSF1
RAD9AENSG00000172613.3197.60380284.53880-0.526002.535301.63540HepG2HNRNPA2B1
RAD9AENSG00000172613.3336.03050147.847801.184409.310708.08970HepG2HNRNPK
RAD9AENSG00000172613.3357.07970281.987800.340502.196101.58570HepG2HNRNPL
RAD9AENSG00000172613.3328.80970221.921400.567102.765302.13580HepG2HNRNPLL
RAD9AENSG00000172613.3216.89580143.410300.596803.198102.54990HepG2HNRNPU
RAD9AENSG00000172613.3280.59590209.593100.420801.928101.31540HepG2IGF2BP1
RAD9AENSG00000172613.3236.32340148.228000.672802.997602.29930HepG2IGF2BP2
RAD9AENSG00000172613.3222.34500146.486900.601903.408102.60010HepG2ILF2
RAD9AENSG00000172613.3237.83910147.552700.688702.710701.47880HepG2KRR1
RAD9AENSG00000172613.3290.49680168.000800.790002.770401.55610HepG2LIN28B
RAD9AENSG00000172613.3430.84880157.355501.4531014.8926013.42680HepG2MAGOH
RAD9AENSG00000172613.3167.19370244.69570-0.549502.577301.79520HepG2MSI2
RAD9AENSG00000172613.3263.08410161.924100.700103.223702.54230HepG2NCBP2
RAD9AENSG00000172613.3223.93690127.908500.807905.118104.14440HepG2PPIL4
RAD9AENSG00000172613.3289.77090211.393500.454902.406401.67960HepG2PRPF4
RAD9AENSG00000172613.387.27730147.63140-0.758302.604801.81950HepG2PRPF8
RAD9AENSG00000172613.3204.07020311.10900-0.608404.080303.39000HepG2PUM1
RAD9AENSG00000172613.3204.40090305.89970-0.581703.623302.65630HepG2RBM15
RAD9AENSG00000172613.3295.02980203.989800.532302.731402.19290HepG2NELFE
RAD9AENSG00000172613.3280.57070189.973400.562503.033002.39140HepG2RECQL
RAD9AENSG00000172613.3162.56580229.30390-0.496202.044401.44640HepG2RPLP0
RAD9AENSG00000172613.3206.93590127.706400.696303.814503.07910HepG2SAFB2
RAD9AENSG00000172613.3291.2874098.019901.571205.054503.10890HepG2SF1
RAD9AENSG00000172613.3662.75880332.362000.995608.437007.20730HepG2SF3A3
RAD9AENSG00000172613.3328.20570190.844100.782105.753404.95320HepG2SF3B4
RAD9AENSG00000172613.3201.8242087.687601.202603.285001.82960HepG2SNRNP200
RAD9AENSG00000172613.3155.70970244.40070-0.650402.286401.57870HepG2SNRNP70
RAD9AENSG00000172613.3102.88660354.28570-1.7839024.0738022.97450HepG2SRFBP1
RAD9AENSG00000172613.3137.49300236.37120-0.781703.341602.23110HepG2SRSF3
RAD9AENSG00000172613.3131.17420209.11910-0.672803.777802.98350HepG2SRSF7
RAD9AENSG00000172613.377.68500162.04730-1.060706.178405.41140HepG2SRSF9
RAD9AENSG00000172613.3390.10140307.584200.342801.918901.47180HepG2SSB
RAD9AENSG00000172613.3207.4453096.743901.100406.372204.64460HepG2STIP1
RAD9AENSG00000172613.372.62840190.53940-1.391507.299806.28500HepG2SUPV3L1
RAD9AENSG00000172613.3300.46470216.351600.473702.110901.46600HepG2TARDBP
RAD9AENSG00000172613.3330.14250144.553701.191405.478804.02160HepG2TBRG4
RAD9AENSG00000172613.362.01320127.70710-1.042203.244302.16900HepG2TFIP11
RAD9AENSG00000172613.3190.21850139.306400.449301.718501.30440HepG2TIAL1
RAD9AENSG00000172613.3293.22320140.598401.0603010.121709.14730HepG2TRIM56
RAD9AENSG00000172613.3162.61110258.65620-0.669603.215702.54200HepG2U2AF1
RAD9AENSG00000172613.3228.19650112.552101.019606.131204.99110HepG2UCHL5
RAD9AENSG00000172613.3299.38140174.455000.779003.102902.04060HepG2UPF2
RAD9AENSG00000172613.3309.99070187.565400.724703.491802.68300HepG2XRN2
RAD9AENSG00000172613.3729.06830574.298800.344202.831602.25760K562AGGF1
RAD9AENSG00000172613.31019.15800642.204200.666207.021006.15590K562AQR
RAD9AENSG00000172613.3767.37830944.99170-0.300402.258201.37650K562CELF1
RAD9AENSG00000172613.3600.47940726.20390-0.274302.002901.43280K562DDX47
RAD9AENSG00000172613.3465.50830306.609400.602303.678202.61350K562EFTUD2
RAD9AENSG00000172613.3258.70550177.217600.545702.688601.90270K562EIF3G
RAD9AENSG00000172613.3542.72990351.946600.624805.127404.00910K562EIF4A3
RAD9AENSG00000172613.3284.08910412.33960-0.537502.952001.77930K562FKBP4
RAD9AENSG00000172613.3389.35310509.38570-0.387702.142501.38650K562FMR1
RAD9AENSG00000172613.3320.54820431.76860-0.429702.207301.39510K562FTO
RAD9AENSG00000172613.343.19960150.12220-1.797006.884405.65660K562G3BP2
RAD9AENSG00000172613.3849.23760539.792900.653703.727401.53720K562HNRNPH1
RAD9AENSG00000172613.3408.06720271.708400.586603.064401.96480K562IGF2BP2
RAD9AENSG00000172613.3419.73100285.454000.556104.051603.02860K562MAGOH
RAD9AENSG00000172613.3643.26810358.509400.843303.604402.43370K562PABPN1
RAD9AENSG00000172613.3425.67210253.965000.745005.671504.26290K562PCBP2
RAD9AENSG00000172613.31259.83360652.608300.948805.614104.42430K562PCBP3
RAD9AENSG00000172613.3930.53890500.551200.8944012.2119010.58520K562POLR2G
RAD9AENSG00000172613.3695.22830425.972300.706606.797205.27100K562PSIP1
RAD9AENSG00000172613.3380.01960277.344000.454302.774802.10930K562PTBP1
RAD9AENSG00000172613.3834.47890592.671600.493503.159402.58600K562PUS1
RAD9AENSG00000172613.3716.26320577.438200.310702.145901.61150K562RBM15
RAD9AENSG00000172613.3380.78850265.884700.518103.154602.25190K562RBM22
RAD9AENSG00000172613.3633.67210446.071100.506403.855302.56860K562SAFB
RAD9AENSG00000172613.3571.96430327.764100.803202.601101.45170K562SF1
RAD9AENSG00000172613.3951.95710642.335900.567506.849305.61410K562SF3A3
RAD9AENSG00000172613.3279.63460155.915800.842704.935303.77910K562SF3B4
RAD9AENSG00000172613.3672.18560399.432300.750802.531201.30500K562SFPQ
RAD9AENSG00000172613.3575.50350368.379600.643505.335803.77180K562SRFBP1
RAD9AENSG00000172613.3409.30190271.900900.590004.018603.17240K562SRSF1
RAD9AENSG00000172613.3400.50260266.932500.585203.549502.33590K562SRSF4
RAD9AENSG00000172613.3367.60030256.817900.517303.058201.94360K562SRSF5
RAD9AENSG00000172613.3562.00040275.157101.030209.059107.67940K562TARDBP
RAD9AENSG00000172613.3386.29740265.426500.541303.462702.53180K562TIA1
RAD9AENSG00000172613.3604.70880409.720600.561503.869502.75410K562TIAL1
RAD9AENSG00000172613.3407.84440260.520000.646504.310502.89800K562TRA2A
RAD9AENSG00000172613.3718.43910435.215600.723007.260405.57050K562TRIM56
RAD9AENSG00000172613.383.35080150.14090-0.849003.050902.20710K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAD9A is not available on ENCORE database.





8 RBPs can affect the splicing of RAD9A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAD9AENSG00000172613.3chr11+6715985167160012671596316715970267160124671602530.524000.000200.09667includedHepG2LIN28B
SERAD9AENSG00000172613.3chr11+671596316715970267159422671595496716012467160253-0.271000.000000.00012excludedK562PUS1
SERAD9AENSG00000172613.3chr11+671596316715970267159422671595496716012467160253-0.175000.001540.04728excludedK562UTP18
A5SSRAD9AENSG00000172613.3chr11+671635816716364667163581671636426716373367163871-0.153000.000090.00509shorterK562PUS1
A5SSRAD9AENSG00000172613.3chr11+671635816716364667163581671636426716373367163871-0.125000.000460.07485shorterK562SF3B1
RIRAD9AENSG00000172613.3chr11+671633826716364667163382671634926716358167163646-0.054000.000830.05027excludedK562PPIL4
RIRAD9AENSG00000172613.3chr11+671633826716364667163382671634926716358167163646-0.065000.012920.07030excludedK562PUS1
RIRAD9AENSG00000172613.3chr11+6716364267163871671636426716364667163733671638710.064000.000020.00150includedK562SF3B1
RIRAD9AENSG00000172613.3chr11+6716364267163871671636426716364667163733671638710.133000.010670.09941includedK562PRPF8
RIRAD9AENSG00000172613.3chr11+671633826716364667163382671634926716358167163646-0.061000.000100.01111excludedK562SBDS
RIRAD9AENSG00000172613.3chr11+671633826716364667163382671634926716358167163646-0.072000.004060.04423excludedK562UTP18
RIRAD9AENSG00000172613.3chr11+6716338267163646671633826716349267163581671636460.158000.000010.00013includedK562AQR
RIRAD9AENSG00000172613.3chr11+6716364267163871671636426716364667163733671638710.360000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAD9A is not avaliable on ENCORE database.