PSMA5

General Information

Gene Name       : PSMA5
Gene ID             : ENSG00000143106.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PSMA5)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PSMA5ENSG00000143106.1297.2499.6498.44ENCSR000AEF
HepG2PSMA5ENSG00000143106.1296.44114.13105.28ENCSR985KAT
K562PSMA5ENSG00000143106.12184.90165.38175.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PSMA5 is not avaliable on ENCORE database.



Proteins bound to RNA

  • PSMA5 RNA is bound by 32 proteins.  







eCLIP assay for PSMA5 is not avaliable on ENCORE database.





32 proteins are bound to PSMA5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1109944635109944714-3'-UTR,CDS,intron-Distal3.356335.31971K562IGF2BP1
chr1109944521109944624-3'-UTR,intron-Distal3.8402610.73755HepG2LARP4
chr1109944591109944651-3'-UTR,CDS,intron-Distal6.417856.70843K562RPS3
chr1109944614109944715-3'-UTR,CDS,intron-Distal3.661164.23869K562GRWD1
chr1109944482109944567-3'-UTR,intron-Distal3.285618.12467K562PUM2
chr1109944591109944641-3'-UTR,CDS,intron-Distal3.400766.54748K562PABPC4
chr1109944530109944573-3'-UTR,intron-Distal3.692386.58004HepG2U2AF2
chr1109944487109944573-3'-UTR,intron-Distal6.2574428.18818HepG2SUB1
chr1109944631109944714-3'-UTR,CDS,intron-Distal3.268884.79091K562SND1
chr1109944522109944585-3'-UTR,intron-Distal5.4436354.99939K562PABPC4
chr1109944487109944522-3'-UTR,intron-Distal3.978403.48680K562PABPC4
chr1109944513109944581-3'-UTR,intron-Distal4.919287.92839K562NOLC1
chr1109944518109944570-3'-UTR,intron-Distal3.537623.08258K562TIA1
chr1109957920109958056-5'-UTR,CDS,intron-Distal,intron-Proximal3.364956.57746K562BUD13
chr1109957935109957988-5'-UTR,CDS,intron-Distal,intron-Proximal3.218444.77875HepG2SUB1
chr1109957888109957987-5'-UTR,CDS,intron-Distal,intron-Proximal3.234407.70439HepG2BCLAF1
chr1109957873109957989-5'-UTR,CDS,intron-Distal,intron-Proximal3.890357.52293K562GRWD1
chr1109957883109957986-5'-UTR,CDS,intron-Distal,intron-Proximal3.332876.45360K562LIN28B
chr1109968922109968947-5'-UTR,CDS,intron-Distal3.7213946.11600K562DDX3X
chr1109968944109969047-5'-UTR,CDS,intron-Distal,intron-Proximal3.981449.82585K562DROSHA
chr1109968991109969050-5'-UTR,intron-Distal,intron-Proximal3.7419062.89500K562DDX3X
chr1109969000109969057-5'-UTR,intron-Distal,intron-Proximal4.970208.83026K562RPS3
chr1109968923109969000-5'-UTR,CDS,intron-Distal,intron-Proximal4.5959311.01281K562RPS3
chr1109968921109969051-5'-UTR,CDS,intron-Distal,intron-Proximal4.0167942.66843K562GEMIN5
chr1109957867109957990-5'-UTR,CDS,intron-Distal,intron-Proximal3.414248.88472HepG2PPIG
chr1109968937109969038-5'-UTR,CDS,intron-Distal,intron-Proximal3.5530114.25845HepG2SUB1
chr1109957869109957985-5'-UTR,CDS,intron-Distal4.4049213.83935HepG2G3BP1
chr1109968999109969061-5'-UTR,intron-Distal,intron-Proximal3.779563.75919K562EIF3G
chr1109968950109968991-5'-UTR,CDS,intron-Distal,intron-Proximal3.7928966.81962K562DDX3X
chr1109957928109957986-5'-UTR,CDS,intron-Distal,intron-Proximal3.799567.83494K562RPS3
chr1109954493109954540-CDS,intron-Distal,intron-Proximal3.766438.10543K562UCHL5
chr1109953632109953705-CDS,intron-Distal,intron-Proximal3.143876.13998HepG2G3BP1
chr1109954782109954843-CDS,intron-Distal,intron-Proximal4.470485.94114HepG2BUD13
chr1109944643109944713-CDS,intron-Distal3.152215.03485HepG2G3BP1
chr1109954772109954807-CDS,intron-Distal,intron-Proximal5.054117.18438HepG2G3BP1
chr1109955689109955753-CDS,intron-Distal,intron-Proximal3.895129.88634HepG2G3BP1
chr1109954743109954820-CDS,intron-Distal,intron-Proximal3.533164.77019K562BUD13
chr1109953682109953736-CDS,intron-Distal,intron-Proximal3.413635.15500HepG2BCLAF1
chr1109955714109955756-CDS,intron-Distal5.657245.98137K562RPS3
chr1109964433109964525-CDS,intron-Distal,intron-Proximal3.544249.87196K562PRPF8
chr1109954697109954751-CDS,intron-Distal,intron-Proximal4.422496.24921K562RPS3
chr1109954725109954772-CDS,intron-Distal4.952947.65502HepG2G3BP1
chr1109952577109952637-CDS,intron-Distal,intron-Proximal3.249455.75388HepG2G3BP1
chr1109954491109954539-CDS,intron-Distal,intron-Proximal3.639899.66778HepG2PPIG
chr1109954754109954766-CDS,intron-Distal4.2546017.12851K562YBX3
chr1109953650109953739-CDS,intron-Distal,intron-Proximal3.881633.39325K562SRSF1
chr1109964520109964549-CDS,intron-Distal,intron-Proximal3.307966.36993K562SND1
chr1109953695109953736-CDS,intron-Distal,intron-Proximal4.2785412.44245K562RPS3
chr1109952548109952637-CDS,intron-Distal,intron-Proximal3.551513.81856K562IGF2BP1
chr1109955717109955758-CDS,intron-Distal,intron-Proximal3.745146.65749K562LIN28B
chr1109954697109954725-CDS,intron-Distal,intron-Proximal3.483693.22540HepG2G3BP1
chr1109954495109954537-CDS,intron-Distal,intron-Proximal3.612535.56491HepG2BCLAF1
chr1109964480109964518-CDS,intron-Distal,intron-Proximal3.5283832.14470K562DDX3X
chr1109954536109954558-CDS,intron-Distal,intron-Proximal3.016243.42743HepG2SUB1
chr1109954498109954559-CDS,intron-Distal,intron-Proximal4.2684316.62258K562RPS3
chr1109953632109953695-CDS,intron-Distal,intron-Proximal4.3942019.31038K562RPS3
chr1109955688109955722-CDS,intron-Distal,intron-Proximal4.994714.77410HepG2SUB1
chr1109952547109952581-CDS,intron-Distal,intron-Proximal3.256425.80107K562SND1
chr1109954726109954754-CDS,intron-Distal3.8674217.02153K562YBX3
chr1109952596109952674-CDS,intron-Distal,intron-Proximal3.9804811.47124K562AQR
chr1109957857109957883-CDS,intron-Distal,intron-Proximal4.286374.72426K562LIN28B
chr1109964481109964549-CDS,intron-Distal,intron-Proximal3.475849.88743HepG2SUB1
chr1109953705109953738-CDS,intron-Distal,intron-Proximal4.118724.01763HepG2GRWD1
chr1109954498109954536-CDS,intron-Distal,intron-Proximal3.799766.04184HepG2SUB1
chr1109952577109952641-CDS,intron-Distal,intron-Proximal3.366324.65365HepG2GRWD1
chr1109964518109964548-CDS,intron-Distal3.3945738.83890K562DDX3X
chr1109964418109964448-intron-Distal,intron-Proximal6.0010723.92744K562AQR
chr1109947886109947948-intron-Distal3.029084.01959HepG2SUGP2
chr1109968826109968907-intron-Distal,intron-Proximal3.746975.32227K562EFTUD2
chr1109968763109968896-intron-Distal,intron-Proximal5.2771118.01977HepG2EFTUD2
chr1109954358109954445-intron-Distal,intron-Proximal3.389845.37697K562EFTUD2
chr1109957586109957673-intron-Distal3.309074.70224K562KHSRP
chr1109952454109952509-intron-Distal,intron-Proximal3.176913.49653K562PRPF8
chr1109953534109953631-intron-Distal,intron-Proximal5.243367.23718K562AQR
chr1109956151109956209-intron-Distal3.348164.32378K562HNRNPM
chr1109948856109948930-intron-Distal3.102594.88763HepG2SUGP2
chr1109964448109964473-intron-Distal,intron-Proximal5.9769223.38793K562AQR
chr1109956074109956118-intron-Distal4.630206.61547K562HNRNPM
chr1109948483109948584-intron-Distal3.838236.33671HepG2HNRNPK
chr1109953293109953364-intron-Distal3.128873.73266K562KHSRP
chr1109968811109968897-intron-Distal,intron-Proximal3.392404.48980K562PRPF8
chr1109964473109964482-intron-Distal,intron-Proximal4.5968416.15323K562AQR
chr1109947829109947873-intron-Distal3.199933.00129HepG2SUGP2
chr1109955618109955673-intron-Distal,intron-Proximal3.545394.23459K562PRPF8
chr1109947712109947792-intron-Distal3.708004.28254HepG2MATR3
chr1109948397109948460-intron-Distal3.804795.79523HepG2SUGP2
chr1109948645109948679-intron-Distal4.154354.36036HepG2SUGP2
chr1109944740109944820-intron-Distal4.090103.27601HepG2RBM5
chr1109956081109956121-intron-Distal3.777114.87260HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PSMA5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PSMA5 is not available on ENCORE database.

  • 88 RBPs can affect the levels of PSMA5.  








The Knockdown/knockout RNA-Seq assay for PSMA5 is not available on ENCORE database.





88 RBPs can affect the gene expression of PSMA5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PSMA5ENSG00000143106.8960.791901414.37870-0.557905.653704.29710HepG2ADAR
PSMA5ENSG00000143106.81326.577001022.692200.375203.025702.40300HepG2BOP1
PSMA5ENSG00000143106.81567.887601289.553700.281902.344101.63040HepG2CALR
PSMA5ENSG00000143106.81160.811601632.74310-0.492203.344302.26370HepG2CCAR1
PSMA5ENSG00000143106.81379.924601681.12620-0.284803.615502.67900HepG2DDX19B
PSMA5ENSG00000143106.81479.597201739.11650-0.233202.448201.80460HepG2DKC1
PSMA5ENSG00000143106.81167.496701411.60150-0.273903.601402.87510HepG2DNAJC2
PSMA5ENSG00000143106.81698.211202677.02140-0.656607.830506.86810HepG2EIF2S1
PSMA5ENSG00000143106.81231.272201495.48170-0.280502.384401.38100HepG2EIF3G
PSMA5ENSG00000143106.82061.808902958.36590-0.520904.539503.72400HepG2EIF4A3
PSMA5ENSG00000143106.82200.507802880.49410-0.388502.275201.64770HepG2EIF4B
PSMA5ENSG00000143106.82291.953803402.86870-0.5702015.1429013.91820HepG2ETF1
PSMA5ENSG00000143106.82140.352701776.129500.269002.289901.53080HepG2EWSR1
PSMA5ENSG00000143106.82120.565202985.04110-0.493304.958704.05230HepG2FXR1
PSMA5ENSG00000143106.82101.335002768.97180-0.398003.075702.37590HepG2G3BP1
PSMA5ENSG00000143106.82052.161102939.73810-0.518505.544104.26990HepG2G3BP2
PSMA5ENSG00000143106.81300.217901681.41180-0.370902.572301.59500HepG2GNB2L1
PSMA5ENSG00000143106.8991.274601437.88030-0.536605.825704.93430HepG2HNRNPA1
PSMA5ENSG00000143106.81282.327101599.35660-0.318702.532001.86630HepG2HNRNPC
PSMA5ENSG00000143106.81463.727801696.08930-0.212602.352301.68690HepG2HNRNPF
PSMA5ENSG00000143106.82226.253402804.04850-0.332902.850602.14110HepG2HNRNPK
PSMA5ENSG00000143106.81127.954901588.78400-0.494208.979607.93550HepG2HNRNPU
PSMA5ENSG00000143106.82303.674402814.56680-0.289001.954701.37810HepG2IGF2BP2
PSMA5ENSG00000143106.81388.637501622.89360-0.224902.655201.93600HepG2ILF2
PSMA5ENSG00000143106.81166.540901587.93130-0.444902.941501.70450HepG2KHDRBS1
PSMA5ENSG00000143106.82163.412102831.03410-0.388002.431201.50280HepG2KHSRP
PSMA5ENSG00000143106.82238.845703073.47750-0.457104.045203.28500HepG2NCBP2
PSMA5ENSG00000143106.82159.951502737.02650-0.341602.516201.82470HepG2PABPC4
PSMA5ENSG00000143106.8987.392401417.07180-0.521207.907406.71270HepG2PPIL4
PSMA5ENSG00000143106.82057.290002749.44930-0.418407.890507.06310HepG2PTBP1
PSMA5ENSG00000143106.81659.601102687.38410-0.695407.436606.52140HepG2PUF60
PSMA5ENSG00000143106.82461.492202977.83100-0.274703.191802.52790HepG2QKI
PSMA5ENSG00000143106.83259.182602844.159800.196402.108201.64010HepG2RBM22
PSMA5ENSG00000143106.82061.070302702.53170-0.390904.643703.78940HepG2RBM25
PSMA5ENSG00000143106.81951.542203059.91580-0.6489018.3479017.19290HepG2NELFE
PSMA5ENSG00000143106.81725.571502849.81830-0.7238022.5489021.08350HepG2RECQL
PSMA5ENSG00000143106.81465.087001827.30910-0.318702.820002.13130HepG2RPLP0
PSMA5ENSG00000143106.81412.883601831.93860-0.374703.076302.23210HepG2RPS2
PSMA5ENSG00000143106.82038.351202862.62380-0.4899011.1407010.07640HepG2SF3B4
PSMA5ENSG00000143106.82033.038802577.18140-0.342202.685001.99170HepG2SLBP
PSMA5ENSG00000143106.82857.560303212.35830-0.168802.022701.57390HepG2SRFBP1
PSMA5ENSG00000143106.82579.972102987.92190-0.211802.930102.44720HepG2SRSF1
PSMA5ENSG00000143106.81857.848202430.80120-0.387807.472306.64570HepG2SRSF9
PSMA5ENSG00000143106.81832.053502789.06050-0.6063017.1532016.10460HepG2SSB
PSMA5ENSG00000143106.81368.551601102.973900.311202.391701.51260HepG2SUPT6H
PSMA5ENSG00000143106.82029.265002685.55630-0.404306.417105.62390HepG2TAF15
PSMA5ENSG00000143106.82012.305002467.77110-0.294402.962602.10090HepG2TIA1
PSMA5ENSG00000143106.81231.475301543.87330-0.326202.624802.13550HepG2TIAL1
PSMA5ENSG00000143106.81157.702801557.59630-0.428106.946106.12190HepG2TRIM56
PSMA5ENSG00000143106.81106.253101397.36020-0.337002.395201.80680HepG2U2AF1
PSMA5ENSG00000143106.81658.359401345.094000.301903.764603.08320HepG2UTP3
PSMA5ENSG00000143106.81840.711301532.267300.264503.922003.30150HepG2ZNF622
PSMA5ENSG00000143106.81078.289701489.18230-0.465802.926801.58840HepG2ZRANB2
PSMA5ENSG00000143106.84218.388403217.659300.390604.430303.59700K562AKAP8L
PSMA5ENSG00000143106.84151.342503376.088500.298104.101502.96950K562ATP5C1
PSMA5ENSG00000143106.83844.561004479.14720-0.220402.809601.48640K562BCCIP
PSMA5ENSG00000143106.83736.674204328.67600-0.212203.290702.24040K562BCLAF1
PSMA5ENSG00000143106.81024.568901664.50910-0.700109.230706.98150K562CCAR1
PSMA5ENSG00000143106.81789.293102270.44330-0.343603.629502.73200K562CPSF6
PSMA5ENSG00000143106.82771.634203283.94640-0.244702.708001.66070K562CSTF2
PSMA5ENSG00000143106.81404.355201863.31850-0.408003.529102.00320K562DHX30
PSMA5ENSG00000143106.84538.586303462.467400.390307.129205.61130K562DKC1
PSMA5ENSG00000143106.81414.404401789.95000-0.339702.803101.44960K562DNAJC21
PSMA5ENSG00000143106.82760.836003471.29140-0.330402.673301.77720K562EFTUD2
PSMA5ENSG00000143106.83558.156305023.58150-0.4976011.5832010.26190K562EIF2S2
PSMA5ENSG00000143106.81055.502701693.13300-0.681804.509003.19400K562EIF3A
PSMA5ENSG00000143106.82875.862403717.01190-0.370102.502001.52440K562EIF3D
PSMA5ENSG00000143106.86150.605407529.86700-0.291904.925103.68950K562EIF4G2
PSMA5ENSG00000143106.81993.544102554.54230-0.357702.743601.62380K562FKBP4
PSMA5ENSG00000143106.81837.525902310.04590-0.330202.638801.80410K562FMR1
PSMA5ENSG00000143106.81556.823101957.93910-0.330702.292801.46500K562FTO
PSMA5ENSG00000143106.84466.075603213.670100.4747010.516709.42280K562FXR1
PSMA5ENSG00000143106.84083.811005021.82850-0.298303.312702.13690K562HNRNPA1
PSMA5ENSG00000143106.81929.669602942.38420-0.6086010.057208.97530K562HNRNPC
PSMA5ENSG00000143106.82062.954102627.55810-0.349003.499102.20440K562HNRNPF
PSMA5ENSG00000143106.84364.085502776.110300.652507.962806.25090K562HNRNPM
PSMA5ENSG00000143106.84427.485405561.35500-0.328904.897203.69660K562HNRNPU
PSMA5ENSG00000143106.84598.993003825.391600.265602.649801.76440K562MBNL1
PSMA5ENSG00000143106.82842.585403252.43990-0.194302.522201.74900K562MTPAP
PSMA5ENSG00000143106.83281.948903613.72800-0.138902.071101.41460K562NSUN2
PSMA5ENSG00000143106.85190.051003831.475300.437704.998603.84330K562PPIG
PSMA5ENSG00000143106.82135.815702638.15710-0.304702.384801.55200K562PSIP1
PSMA5ENSG00000143106.84897.932304124.785900.247802.408701.78180K562PTBP1
PSMA5ENSG00000143106.86728.660908215.63860-0.288102.556601.77290K562PUF60
PSMA5ENSG00000143106.86814.748408562.11390-0.329305.927904.50480K562PUM2
PSMA5ENSG00000143106.84214.393003191.075900.401204.206403.55820K562PUS1
PSMA5ENSG00000143106.83837.468803109.189000.303504.061003.35940K562RBM15
PSMA5ENSG00000143106.82904.413003565.86430-0.296004.228103.23480K562SF3A3
PSMA5ENSG00000143106.81523.076502061.48870-0.436703.395002.31420K562SF3B1
PSMA5ENSG00000143106.81842.512102281.75530-0.308502.470501.51370K562SRFBP1
PSMA5ENSG00000143106.81273.139601688.01610-0.406904.149202.82340K562SRSF4
PSMA5ENSG00000143106.82435.527503270.99620-0.425503.477102.32420K562SUPV3L1
PSMA5ENSG00000143106.83183.894504092.52170-0.362203.312602.53690K562TARDBP
PSMA5ENSG00000143106.83321.085403947.66540-0.249302.426101.66500K562TIA1
PSMA5ENSG00000143106.81872.221302537.46510-0.438603.907502.78250K562TIAL1
PSMA5ENSG00000143106.82166.993802695.73630-0.315002.768301.82210K562TRIM56
PSMA5ENSG00000143106.82574.613203461.74520-0.427104.066502.80840K562UCHL5
PSMA5ENSG00000143106.83105.572603831.71440-0.303105.390604.42390K562UPF1
PSMA5ENSG00000143106.82740.907703278.67380-0.258502.400601.58350K562WDR3
PSMA5ENSG00000143106.82667.007303524.70670-0.402303.609702.16270K562XRN2
PSMA5ENSG00000143106.85856.976007764.76360-0.406805.002503.78770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PSMA5 is not available on ENCORE database.





3 RBPs can affect the splicing of PSMA5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPSMA5ENSG00000143106.8chr1-109953632109953758109952549109952636109954498109954557-0.056000.000120.00343excludedHepG2U2AF1
SEPSMA5ENSG00000143106.8chr1-109953632109953735109952549109952636109954498109954557-0.108000.000000.00000excludedK562AQR
SEPSMA5ENSG00000143106.8chr1-109955689109955827109954706109954806109957858109957985-0.096000.000000.00000excludedK562AQR
A3SSPSMA5ENSG00000143106.8chr1-1099525491099527151099525491099526361099536321099537350.117000.000000.00000longerK562AQR
MXEPSMA5ENSG00000143106.8chr1-1099544981099545571099547061099548061099536321099537351099578581099579850.056000.000000.000001includedK562AQR
MXEPSMA5ENSG00000143106.8chr1-109952549109952636109953632109953735109941652109944712109954498109954557-0.090000.004630.060242includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PSMA5 is not avaliable on ENCORE database.