PHACTR4

General Information

Gene Name       : PHACTR4
Gene ID             : ENSG00000204138.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHACTR4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHACTR4ENSG00000204138.1223.7723.2523.51ENCSR000AEF
HepG2PHACTR4ENSG00000204138.1229.1033.4231.26ENCSR985KAT
K562PHACTR4ENSG00000204138.1227.3529.3028.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHACTR4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHACTR4 RNA is bound by 29 proteins.  







eCLIP assay for PHACTR4 is not avaliable on ENCORE database.





29 proteins are bound to PHACTR4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12882391128824002+3'-UTR3.546526.24912HepG2UPF1
chr12882675428826811+3'-UTR5.2868624.39476K562PUM2
chr12882458528824642+3'-UTR3.450683.77931K562UPF1
chr12882373328823792+3'-UTR4.841666.29854K562UPF1
chr12882374328823819+3'-UTR3.354497.66569HepG2UPF1
chr12882615828826249+3'-UTR4.560867.92165K562AKAP1
chr12882616028826248+3'-UTR4.9579911.62373K562UPF1
chr12882347828823575+3'-UTR3.467277.40057K562FAM120A
chr12882629928826357+3'-UTR3.209843.51714HepG2QKI
chr12882666528826732+3'-UTR4.7051215.01495K562PUM2
chr12882661028826665+3'-UTR6.1775413.73238K562PUM2
chr12882587728825939+3'-UTR3.092845.17063K562AKAP1
chr12882314628823188+3'-UTR3.904303.80193HepG2GRWD1
chr12882617328826224+3'-UTR3.163123.57155HepG2ILF3
chr12882681128826844+3'-UTR5.8850613.73238K562PUM2
chr12882599828826136+3'-UTR3.4766217.84977K562UPF1
chr12873394428733982+5'-UTR,CDS,intron-Proximal3.354963.32039HepG2PPIG
chr12869627528696379+5'-UTR,intron-Proximal3.123646.97029HepG2PRPF8
chr12869624628696354+5'-UTR,intron-Proximal3.720269.38603HepG2SRSF1
chr12869622528696336+5'-UTR3.116455.32728HepG2DDX3X
chr12869624228696338+5'-UTR,intron-Proximal3.481395.38934HepG2NCBP2
chr12880009428800205+CDS3.276856.56666K562YBX3
chr12879319128793258+CDS5.077658.11911K562IGF2BP2
chr12879318028793278+CDS3.090644.01833HepG2PCBP2
chr12881567828815727+CDS,intron-Proximal3.285014.45064HepG2GRWD1
chr12880045428800548+CDS3.322415.73981HepG2GRWD1
chr12879312428793181+CDS4.203943.36226K562PCBP1
chr12880696228807032+CDS,intron-Proximal5.5055910.61570K562ZNF622
chr12879314128793288+CDS,intron-Proximal3.829888.34659K562QKI
chr12880278328802804+CDS,intron-Proximal4.168133.34184HepG2GRWD1
chr12880261928802662+CDS3.581603.61259K562ZNF622
chr12880700328807097+CDS4.549089.47159HepG2BCLAF1
chr12880048428800559+CDS3.353485.15500HepG2BCLAF1
chr12881743628817520+CDS,intron-Proximal4.507525.25202HepG2AQR
chr12880695828807003+CDS,intron-Proximal4.026885.79432HepG2BCLAF1
chr12880268228802783+CDS4.976137.64336HepG2GRWD1
chr12879323228793277+CDS4.480334.37348HepG2BCLAF1
chr12880275328802804+CDS,intron-Proximal3.463087.70405K562ZNF622
chr12880043428800542+CDS3.670597.05173K562ZNF622
chr12880026328800343+CDS3.344363.58705K562IGF2BP2
chr12880261828802677+CDS,intron-Proximal3.313523.12941K562UCHL5
chr12880696228807002+CDS,intron-Proximal3.366873.79741HepG2GRWD1
chr12880700228807117+CDS,intron-Proximal5.200718.99884HepG2GRWD1
chr12880272128802805+CDS,intron-Proximal3.624267.45042K562UCHL5
chr12879312328793193+CDS3.601906.35138HepG2IGF2BP1
chr12880060228800662+CDS3.310033.39306HepG2GRWD1
chr12879320128793280+CDS,intron-Proximal4.348455.54754K562IGF2BP1
chr12879319828793261+CDS4.0872816.23767HepG2QKI
chr12880696328806999+CDS3.437063.69481K562UCHL5
chr12880708728807117+CDS,intron-Proximal3.928103.01428K562UCHL5
chr12880044828800553+CDS3.068094.61826K562IGF2BP2
chr12880260928802662+CDS,intron-Proximal4.618725.32906HepG2AQR
chr12880055628800642+CDS4.872366.57313K562RBM15
chr12879807928798172+intron-Distal3.677806.98930HepG2U2AF2
chr12875899828759058+intron-Distal3.868113.71997HepG2ILF3
chr12869948228699522+intron-Distal4.308795.38422HepG2ILF3
chr12878504328785121+intron-Distal3.895626.41317HepG2QKI
chr12878416428784297+intron-Distal,intron-Proximal3.233064.08064K562KHSRP
chr12871010428710197+intron-Distal4.627169.20848HepG2HNRNPM
chr12880711828807234+intron-Distal,intron-Proximal3.830573.71397K562KHSRP
chr12876250228762583+intron-Distal3.852546.82051HepG2QKI
chr12878431828784386+intron-Distal,intron-Proximal4.7241316.81404HepG2U2AF2
chr12879391328793992+intron-Distal4.836156.71516K562TARDBP
chr12871008528710203+intron-Distal3.812745.50914K562EXOSC5
chr12876978128769855+intron-Distal4.439643.42734K562PTBP1
chr12877200028772062+intron-Distal4.494304.40847HepG2PTBP1
chr12873413028734215+intron-Distal3.081885.36888K562KHSRP
chr12871025028710303+intron-Distal4.274893.60235HepG2HNRNPM
chr12879329928793400+intron-Distal,intron-Proximal4.458624.58968K562PRPF8
chr12875473128754846+intron-Distal3.964559.50668HepG2PTBP1
chr12876178128761798+intron-Distal4.9726014.48958HepG2QKI
chr12875469228754757+intron-Distal3.487133.76460HepG2HNRNPL
chr12873994928740061+intron-Distal3.821404.78196HepG2PTBP1
chr12876179828761851+intron-Distal4.5387914.33890HepG2QKI
chr12879236028792436+intron-Proximal4.874885.69951K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHACTR4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHACTR4 is not available on ENCORE database.

  • 70 RBPs can affect the levels of PHACTR4.  








The Knockdown/knockout RNA-Seq assay for PHACTR4 is not available on ENCORE database.





70 RBPs can affect the gene expression of PHACTR4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHACTR4ENSG00000204138.81379.337201595.49070-0.210002.258901.69910HepG2ACO1
PHACTR4ENSG00000204138.81361.935301603.01050-0.235102.426801.70290HepG2AKAP8L
PHACTR4ENSG00000204138.81549.869301217.341900.348302.410101.67190HepG2ASCC1
PHACTR4ENSG00000204138.81535.270402217.36760-0.5304011.131309.91000HepG2AUH
PHACTR4ENSG00000204138.81002.853601335.51010-0.413302.244601.40510HepG2BCCIP
PHACTR4ENSG00000204138.81615.299302359.10880-0.546406.836305.94370HepG2BOP1
PHACTR4ENSG00000204138.82092.350602799.05450-0.419802.772001.79630HepG2CCAR1
PHACTR4ENSG00000204138.8723.961701031.62910-0.510902.598401.85800HepG2CNOT7
PHACTR4ENSG00000204138.81151.016601419.20500-0.302203.120402.03810HepG2YBX3
PHACTR4ENSG00000204138.81351.162601670.88280-0.306403.275502.58790HepG2CELF1
PHACTR4ENSG00000204138.8971.071501393.53280-0.521107.827806.69370HepG2DNAJC21
PHACTR4ENSG00000204138.8838.083501093.99890-0.384402.706301.60750HepG2EFTUD2
PHACTR4ENSG00000204138.8935.538101163.84170-0.315001.929901.42460HepG2EIF2S1
PHACTR4ENSG00000204138.82169.826902545.78560-0.230502.480501.90660HepG2ETF1
PHACTR4ENSG00000204138.81237.080901559.10490-0.333802.946702.08780HepG2EWSR1
PHACTR4ENSG00000204138.81610.067401277.990700.333102.337701.52310HepG2G3BP2
PHACTR4ENSG00000204138.81159.614501636.30680-0.4968010.147508.93450HepG2HNRNPL
PHACTR4ENSG00000204138.81138.428401554.56060-0.449507.597906.63140HepG2HNRNPU
PHACTR4ENSG00000204138.81293.519501587.93050-0.295804.529703.61020HepG2ILF2
PHACTR4ENSG00000204138.82109.008002955.91200-0.487003.695402.73650HepG2LARP4
PHACTR4ENSG00000204138.81823.135501298.149500.489904.302703.48800HepG2MAGOH
PHACTR4ENSG00000204138.81620.166202024.50850-0.321402.916802.08740HepG2MSI2
PHACTR4ENSG00000204138.81688.412801336.168100.337502.210901.64270HepG2NCBP2
PHACTR4ENSG00000204138.8774.174401054.36080-0.445603.968002.25240HepG2NIP7
PHACTR4ENSG00000204138.81392.063701781.30800-0.355703.831302.93310HepG2NOL12
PHACTR4ENSG00000204138.81310.231501538.73660-0.231902.316301.53420HepG2PARN
PHACTR4ENSG00000204138.81619.346101306.641300.309404.076603.36650HepG2PCBP1
PHACTR4ENSG00000204138.81124.978601386.54210-0.301603.066202.29390HepG2PPIL4
PHACTR4ENSG00000204138.81756.714301329.627100.401806.537305.76600HepG2PTBP1
PHACTR4ENSG00000204138.82068.993601805.200700.196702.460401.89420HepG2PUM1
PHACTR4ENSG00000204138.81987.098001625.115000.290004.198003.46640HepG2PUS1
PHACTR4ENSG00000204138.81766.986901479.688500.255902.901702.35030HepG2NELFE
PHACTR4ENSG00000204138.81722.662801378.235500.321704.363103.61240HepG2RECQL
PHACTR4ENSG00000204138.8992.509701384.39920-0.480108.448607.41320HepG2SAFB2
PHACTR4ENSG00000204138.82774.288102319.061200.258501.949301.35020HepG2SF3B1
PHACTR4ENSG00000204138.81294.571201630.63680-0.333004.725403.84710HepG2SLBP
PHACTR4ENSG00000204138.81400.875401614.43370-0.204702.429901.82170HepG2SMN1
PHACTR4ENSG00000204138.82206.042201444.842900.6104015.3778014.45540HepG2SRSF1
PHACTR4ENSG00000204138.81941.227301679.056900.209202.437301.84560HepG2SRSF5
PHACTR4ENSG00000204138.81384.249701689.10030-0.287202.198001.35600HepG2SUPT6H
PHACTR4ENSG00000204138.81118.801101510.50950-0.433105.042404.40860HepG2TIAL1
PHACTR4ENSG00000204138.81176.203301524.05170-0.373805.359804.62570HepG2TRIM56
PHACTR4ENSG00000204138.81271.184501758.65130-0.468303.556602.60250HepG2UBE2L3
PHACTR4ENSG00000204138.8489.45690772.24700-0.657905.483404.40810HepG2UCHL5
PHACTR4ENSG00000204138.81780.725502081.60320-0.225202.809502.10600HepG2UPF1
PHACTR4ENSG00000204138.81763.782602289.36500-0.376308.189207.37730HepG2ZNF622
PHACTR4ENSG00000204138.81344.102101981.59610-0.5600011.8911010.80550K562AGGF1
PHACTR4ENSG00000204138.81748.846202177.35020-0.316202.831601.83490K562AKAP8
PHACTR4ENSG00000204138.81186.645902061.91000-0.7971013.5461011.93620K562AKAP8L
PHACTR4ENSG00000204138.81702.459702163.38210-0.345704.529503.33040K562ATP5C1
PHACTR4ENSG00000204138.8682.44890867.06880-0.345403.410601.92760K562DDX27
PHACTR4ENSG00000204138.82688.802602163.203600.313702.553101.92360K562DDX47
PHACTR4ENSG00000204138.81920.862301440.380300.415206.158205.14880K562EIF2S2
PHACTR4ENSG00000204138.81161.73630807.143900.525302.667801.68450K562EIF3A
PHACTR4ENSG00000204138.81204.40660831.502100.534405.535604.37890K562EIF4A3
PHACTR4ENSG00000204138.81502.703401995.23690-0.409004.057203.01590K562FIP1L1
PHACTR4ENSG00000204138.81153.54890897.130100.362602.423201.38060K562FKBP4
PHACTR4ENSG00000204138.81194.67840864.722100.466205.919705.08370K562FXR1
PHACTR4ENSG00000204138.81419.332501919.38080-0.435404.786503.79270K562GRSF1
PHACTR4ENSG00000204138.81519.141001034.061900.554807.064806.15300K562HNRNPC
PHACTR4ENSG00000204138.81089.356301508.30660-0.469503.807901.61150K562IGF2BP1
PHACTR4ENSG00000204138.81504.061202188.30910-0.541003.859302.86160K562KIF1C
PHACTR4ENSG00000204138.82051.120402451.44400-0.257202.547201.68070K562MBNL1
PHACTR4ENSG00000204138.81286.233901718.27520-0.417802.492301.66400K562NAA15
PHACTR4ENSG00000204138.81426.837202264.90220-0.666609.309707.56520K562PPIG
PHACTR4ENSG00000204138.81338.429801097.453400.286302.339401.72180K562PTBP1
PHACTR4ENSG00000204138.83441.698302540.914600.437707.738705.87570K562PUM1
PHACTR4ENSG00000204138.81327.156302045.06800-0.623807.830706.96380K562PUS1
PHACTR4ENSG00000204138.81280.420901992.42910-0.6379012.2451011.00220K562RBM15
PHACTR4ENSG00000204138.81043.34490845.616500.303002.416401.49420K562RCC2
PHACTR4ENSG00000204138.8630.24300793.45750-0.332202.504101.69300K562SF3B4
PHACTR4ENSG00000204138.81547.382101785.01180-0.206102.374001.49890K562SRPK2
PHACTR4ENSG00000204138.81323.119201075.895800.298302.435201.76490K562SRSF1
PHACTR4ENSG00000204138.81796.792601328.235100.435805.254504.11370K562SYNCRIP
PHACTR4ENSG00000204138.81813.503402334.34920-0.364203.047301.57980K562TRIP6
PHACTR4ENSG00000204138.82193.857701872.307900.228601.933401.32480K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHACTR4 is not available on ENCORE database.





8 RBPs can affect the splicing of PHACTR4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPHACTR4ENSG00000204138.8chr1+2881628528816406288156812881573728817462288175240.158000.000250.00678includedK562SRSF1
SEPHACTR4ENSG00000204138.8chr1+2881628528816406288156812881573728817462288175240.141000.005240.07669includedK562SF3B4
SEPHACTR4ENSG00000204138.8chr1+2871935228719452286961132869633628733920287339740.079000.000600.05768includedHepG2DDX59
SEPHACTR4ENSG00000204138.8chr1+2881624828816406288156812881573728817462288175240.082000.000890.01104includedK562AQR
SEPHACTR4ENSG00000204138.8chr1+2878434228784370287339202873397428785595287857690.330000.000050.00267includedHepG2SF3A3
SEPHACTR4ENSG00000204138.8chr1+287193522871945228696249286963362873392028733974-0.099000.002520.09555excludedHepG2PCBP1
SEPHACTR4ENSG00000204138.8chr1+287867222878680328785595287857692879219528792360-0.073000.001830.04420excludedK562AGGF1
SEPHACTR4ENSG00000204138.8chr1+287193522871945228696113286963362873392028733974-0.093000.002930.06272excludedK562AGGF1
SEPHACTR4ENSG00000204138.8chr1+2871935228719452286961132869633628733920287339740.145000.007210.09178includedK562HNRNPC
A3SSPHACTR4ENSG00000204138.8chr1+2881948828819603288195262881960328818143288182990.051000.007900.04313longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHACTR4 is not avaliable on ENCORE database.