PDPR

General Information

Gene Name       : PDPR
Gene ID             : ENSG00000090857.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDPR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDPRENSG00000090857.138.3310.079.20ENCSR000AEF
HepG2PDPRENSG00000090857.1318.5118.6718.59ENCSR985KAT
K562PDPRENSG00000090857.1318.8318.8118.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDPR is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDPR RNA is bound by 18 proteins.  







eCLIP assay for PDPR is not avaliable on ENCORE database.





18 proteins are bound to PDPR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr167019315070193211+3'-UTR5.4755310.31179K562LIN28B
chr167019128570191314+3'-UTR4.042923.24322HepG2MATR3
chr167019485870194904+3'-UTR3.913923.35877HepG2UPF1
chr167018243870182460+3'-UTR,5'-UTR,CDS,intron-Proximal4.165303.45943HepG2BCLAF1
chr167019259870192630+3'-UTR4.478283.51329HepG2MATR3
chr167019176270191859+3'-UTR4.192148.22287HepG2AKAP1
chr167019120170191258+3'-UTR3.797804.61905HepG2MATR3
chr167019445570194545+3'-UTR4.239873.73296HepG2IGF2BP1
chr167019111670191182+3'-UTR3.497249.27333HepG2UPF1
chr167019167970191769+3'-UTR4.1763410.93151HepG2UPF1
chr167019389970193937+3'-UTR4.002553.08342HepG2AKAP1
chr167019385670193926+3'-UTR3.584267.44522HepG2SUGP2
chr167019314970193222+3'-UTR4.306708.02705HepG2LIN28B
chr167019185970191918+3'-UTR4.712486.49490HepG2AKAP1
chr167019047870190533+3'-UTR,CDS3.722854.98411K562RBM15
chr167019099470191061+3'-UTR5.3183021.56759HepG2UPF1
chr167019362070193662+3'-UTR3.427414.14346HepG2SUGP2
chr167019099270191056+3'-UTR3.040865.86983HepG2PTBP1
chr167019059570190649+3'-UTR,CDS3.934217.98536K562RBM15
chr167019094070190992+3'-UTR4.958854.92727HepG2AKAP1
chr167019093970190978+3'-UTR4.697434.74221HepG2PTBP1
chr167019402770194065+3'-UTR3.791567.04350HepG2PCBP2
chr167019050870190556+3'-UTR,CDS3.878153.35081HepG2G3BP1
chr167019128070191323+3'-UTR4.598875.18972HepG2AKAP1
chr167019148870191571+3'-UTR5.565149.12015K562UPF1
chr167019172370191768+3'-UTR3.480875.06177HepG2SUGP2
chr167019338570193443+3'-UTR4.934186.42091K562UPF1
chr167019197570192078+3'-UTR3.044335.58016HepG2PCBP2
chr167017755970177630+3'-UTR,CDS,intron-Proximal6.0273113.68711K562AQR
chr167019093770190991+3'-UTR3.1657411.52963HepG2PCBP2
chr167019158370191645+3'-UTR3.644717.75281HepG2SUGP2
chr167019086970190896+3'-UTR3.456004.01829HepG2AKAP1
chr167019118270191318+3'-UTR6.6032725.35054HepG2UPF1
chr167019254270192607+3'-UTR4.384057.49447K562UPF1
chr167019406570194114+3'-UTR5.8794816.92837HepG2PCBP2
chr167019500870195105+3'-UTR3.547476.07514HepG2EIF3H
chr167019311970193223+3'-UTR4.3026610.04737K562UPF1
chr167019064970190730+3'-UTR,CDS3.743866.04229K562RBM15
chr167019201270192073+3'-UTR4.037117.31670HepG2UPF1
chr167019165370191746+3'-UTR4.4208010.28733HepG2AKAP1
chr167019445670194532+3'-UTR3.575865.09017HepG2UPF1
chr167019158470191653+3'-UTR4.145257.98114HepG2AKAP1
chr167019099270191078+3'-UTR4.1531414.25015HepG2AKAP1
chr167019236270192436+3'-UTR4.878086.49490HepG2AKAP1
chr167019255670192663+3'-UTR5.8023614.10191HepG2UPF1
chr167019099170191061+3'-UTR4.2713517.26981HepG2PCBP2
chr167014825170148345+5'-UTR,intron-Proximal4.424635.07098K562DDX3X
chr167017011870170238+CDS3.241284.27261HepG2GRWD1
chr167016610670166197+CDS4.102545.65086HepG2BCLAF1
chr167016607570166180+CDS3.266924.62864K562ZNF622
chr167017014570170230+CDS3.101484.39623HepG2PPIG
chr167017624370176293+CDS,intron-Proximal4.365923.61890HepG2G3BP1
chr167017624770176294+CDS,intron-Proximal3.686454.13746HepG2PPIG
chr167019029170190369+intron-Proximal4.436604.50924HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDPR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDPR is not available on ENCORE database.

  • 91 RBPs can affect the levels of PDPR.  








The Knockdown/knockout RNA-Seq assay for PDPR is not available on ENCORE database.





91 RBPs can affect the gene expression of PDPR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDPRENSG00000090857.93680.029002567.820200.519104.651803.98460HepG2AKAP1
PDPRENSG00000090857.91910.857602450.49810-0.358903.293201.76770HepG2ATP5C1
PDPRENSG00000090857.92772.137301822.868900.604708.567807.58410HepG2BOP1
PDPRENSG00000090857.91638.539102038.68200-0.315202.337901.40450HepG2YBX3
PDPRENSG00000090857.92079.071802481.56280-0.255302.831002.18170HepG2CELF1
PDPRENSG00000090857.92545.234002146.300800.245803.674702.73240HepG2DDX19B
PDPRENSG00000090857.91889.469302427.57160-0.361503.378001.94520HepG2DDX47
PDPRENSG00000090857.91380.269301793.93370-0.378202.728401.95950HepG2DDX55
PDPRENSG00000090857.91539.813702112.87560-0.456503.358602.68520HepG2DDX6
PDPRENSG00000090857.91150.324202001.80350-0.7993019.7909018.09180HepG2DNAJC21
PDPRENSG00000090857.92301.810401871.374500.298602.219301.39170HepG2EEF2
PDPRENSG00000090857.92260.099602632.40390-0.220002.481801.68050HepG2EIF4G1
PDPRENSG00000090857.91999.274802521.64060-0.334902.689301.88590HepG2EIF4G2
PDPRENSG00000090857.91686.803101388.508400.280702.163201.46070HepG2FUBP3
PDPRENSG00000090857.92847.905902264.804000.330402.460501.80690HepG2FXR1
PDPRENSG00000090857.92806.702802101.087200.417603.390702.65770HepG2G3BP1
PDPRENSG00000090857.92792.098702230.378200.324002.494101.65100HepG2G3BP2
PDPRENSG00000090857.91556.242702039.08480-0.389903.184202.08970HepG2GNB2L1
PDPRENSG00000090857.92379.411101780.028900.418602.361801.33320HepG2GRSF1
PDPRENSG00000090857.93812.779802127.192400.8418015.5619014.04240HepG2HNRNPK
PDPRENSG00000090857.91982.111302281.05520-0.202702.619201.90370HepG2ILF2
PDPRENSG00000090857.92819.306502148.112600.392202.532201.58180HepG2KHSRP
PDPRENSG00000090857.93580.980502278.319900.652307.231506.24750HepG2MATR3
PDPRENSG00000090857.92445.224801590.058500.620804.105602.83490HepG2METAP2
PDPRENSG00000090857.93269.221402332.024600.487304.591103.78640HepG2NCBP2
PDPRENSG00000090857.91035.961101757.52240-0.762605.046503.81640HepG2PABPC1
PDPRENSG00000090857.92543.711602016.878700.334704.431003.69320HepG2PCBP1
PDPRENSG00000090857.91789.678302439.39510-0.446802.584201.57860HepG2PCBP2
PDPRENSG00000090857.91558.481801256.342700.310803.108401.80250HepG2PKM
PDPRENSG00000090857.91512.079801991.76160-0.397505.635604.61670HepG2PPIL4
PDPRENSG00000090857.9866.203301383.59180-0.675607.434006.18550HepG2PRPF8
PDPRENSG00000090857.91526.767502525.57940-0.726106.819705.93950HepG2PUF60
PDPRENSG00000090857.93236.520802681.084900.271505.816805.02130HepG2PUM1
PDPRENSG00000090857.91574.483902354.08560-0.580303.207002.45150HepG2RAVER1
PDPRENSG00000090857.93022.872603464.92600-0.196902.055901.59140HepG2RBM22
PDPRENSG00000090857.92854.264702283.956600.321504.924804.23890HepG2NELFE
PDPRENSG00000090857.92951.232602127.194800.4723010.416109.33610HepG2RECQL
PDPRENSG00000090857.91801.843401478.194800.285502.478501.89320HepG2RPS19
PDPRENSG00000090857.91652.540902221.75740-0.427004.153003.18170HepG2RPS2
PDPRENSG00000090857.91534.573901988.68320-0.374006.717805.77970HepG2SAFB2
PDPRENSG00000090857.91066.098101791.90660-0.7492010.714409.41030HepG2SF3B1
PDPRENSG00000090857.93265.135702136.656800.6117017.1213015.84120HepG2SF3B4
PDPRENSG00000090857.91807.047802319.12660-0.359907.652206.66430HepG2SMN1
PDPRENSG00000090857.93058.745501993.811100.617304.480103.47480HepG2SNRNP70
PDPRENSG00000090857.92717.368603913.50320-0.5263016.0263015.08280HepG2SRFBP1
PDPRENSG00000090857.93020.485002493.726700.276404.409503.65260HepG2SRSF5
PDPRENSG00000090857.92130.775702499.05480-0.230003.080102.35170HepG2SRSF7
PDPRENSG00000090857.92533.334901814.392000.4815011.1671010.18900HepG2SRSF9
PDPRENSG00000090857.92555.070903397.84170-0.411309.074608.25040HepG2SSB
PDPRENSG00000090857.93568.003602835.981600.331207.646406.69790HepG2SUCLG1
PDPRENSG00000090857.91879.912102707.44410-0.526303.991102.38810HepG2SUGP2
PDPRENSG00000090857.91361.660101851.52590-0.443304.680503.47230HepG2SUPT6H
PDPRENSG00000090857.91388.072301785.75130-0.363402.685102.01750HepG2SUPV3L1
PDPRENSG00000090857.94519.429402004.596501.1727051.2797049.26130HepG2TAF15
PDPRENSG00000090857.92367.138701841.951600.361804.026303.02310HepG2TIA1
PDPRENSG00000090857.91860.908502169.83940-0.221601.885201.45530HepG2TIAL1
PDPRENSG00000090857.91746.304502189.29350-0.326205.052204.33580HepG2TRIM56
PDPRENSG00000090857.92970.445102467.499800.267502.639901.78770HepG2TUFM
PDPRENSG00000090857.93487.743102345.548300.572307.556906.52410HepG2U2AF1
PDPRENSG00000090857.93252.218102611.885800.316202.311701.55230HepG2UBE2L3
PDPRENSG00000090857.92115.790102604.18600-0.299604.954604.06250HepG2UPF1
PDPRENSG00000090857.91043.846101634.98500-0.647405.016903.64110HepG2UPF2
PDPRENSG00000090857.91262.675901729.52670-0.453902.719101.63510HepG2XPO5
PDPRENSG00000090857.91147.241101757.87880-0.615706.986305.84450HepG2XRN2
PDPRENSG00000090857.91565.260202625.41280-0.7461027.6276025.91180HepG2ZC3H8
PDPRENSG00000090857.92464.700802864.10620-0.216703.501002.90610HepG2ZNF622
PDPRENSG00000090857.91804.306102253.31450-0.320604.794404.08200K562AGGF1
PDPRENSG00000090857.91845.442002344.65230-0.345403.243002.53400K562AKAP8L
PDPRENSG00000090857.93950.460202591.006000.608406.842605.98640K562AQR
PDPRENSG00000090857.91944.501502460.06010-0.339304.527803.32950K562ATP5C1
PDPRENSG00000090857.91372.186901876.47470-0.451503.751401.77380K562DDX51
PDPRENSG00000090857.92163.811402523.16160-0.221702.386401.58130K562DKC1
PDPRENSG00000090857.91902.373902454.84440-0.367805.530604.56570K562EIF2S2
PDPRENSG00000090857.91583.240101113.883600.507202.575001.60740K562EIF3A
PDPRENSG00000090857.91732.379201388.404400.319203.546702.65300K562EIF3G
PDPRENSG00000090857.92305.001901277.866400.8509015.2726013.25000K562EIF4A3
PDPRENSG00000090857.94382.331603477.435900.333606.081904.70420K562EIF4G2
PDPRENSG00000090857.91855.003802446.37910-0.399203.988902.95820K562FIP1L1
PDPRENSG00000090857.92164.496901328.916700.7037013.7863012.54020K562FXR1
PDPRENSG00000090857.92555.049103271.24780-0.356503.917103.02140K562GRSF1
PDPRENSG00000090857.91772.221801434.494600.304902.650602.06420K562HNRNPC
PDPRENSG00000090857.93331.523202540.912700.390704.336402.98070K562HNRNPL
PDPRENSG00000090857.91497.601002012.21960-0.426103.337102.30720K562HNRNPM
PDPRENSG00000090857.92069.528603316.71750-0.6805010.424408.90440K562HSPD1
PDPRENSG00000090857.91946.614502381.89110-0.291102.554001.53440K562MAK16
PDPRENSG00000090857.92574.613302102.393100.292202.623601.83520K562MTPAP
PDPRENSG00000090857.92363.799201967.932900.264302.481801.72540K562POLR2G
PDPRENSG00000090857.91980.607602777.17870-0.487705.452104.23770K562PPIG
PDPRENSG00000090857.91241.003901690.68330-0.446103.976303.07840K562PRPF8
PDPRENSG00000090857.91345.726701611.28220-0.259802.095801.50310K562PTBP1
PDPRENSG00000090857.91876.658202325.42050-0.309302.286801.78330K562PUS1
PDPRENSG00000090857.91803.613502265.63200-0.329004.026503.32750K562RBM15
PDPRENSG00000090857.92143.337901753.286000.289702.498201.47080K562SAFB
PDPRENSG00000090857.91750.404801189.366900.557408.446106.91330K562SF3B4
PDPRENSG00000090857.93065.001402361.433000.376108.404906.87260K562SRPK2
PDPRENSG00000090857.92029.880101579.589700.361703.841103.01490K562SRSF1
PDPRENSG00000090857.91828.109901108.777900.721308.030606.01090K562U2AF1
PDPRENSG00000090857.92637.835902203.908600.259203.925702.92960K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDPR is not available on ENCORE database.





10 RBPs can affect the splicing of PDPR :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPDPRENSG00000090857.9chr16+7017741270177561701764557017658970178323701784360.193000.001560.07925includedHepG2AKAP1
SEPDPRENSG00000090857.9chr16+7018144370181576701800367018013170182366701824560.059000.002300.02461includedK562AQR
SEPDPRENSG00000090857.9chr16+701774127017756170176455701765897017832370178436-0.196000.002020.02209excludedK562AQR
SEPDPRENSG00000090857.9chr16+701728017017292670170096701702897017613670176292-0.258000.000780.00990excludedK562AQR
SEPDPRENSG00000090857.9chr16+7014872370148833701475287014834370154363701546220.271000.003330.09581includedK562FXR1
SEPDPRENSG00000090857.9chr16+701652047016532270164325701644477016605370166203-0.282000.000020.00788excludedK562APOBEC3C
SEPDPRENSG00000090857.9chr16+701487237014883370147528701483437015436370154622-0.383000.000790.05601excludedHepG2HNRNPL
SEPDPRENSG00000090857.9chr16+701652047016532270164325701644477016605370166203-0.246000.000300.04194excludedHepG2SSB
SEPDPRENSG00000090857.9chr16+7016520470165322701643257016444770166053701662030.343000.000330.04065includedK562CPSF6
A3SSPDPRENSG00000090857.9chr16+7017642970176589701764557017658970176136701762920.296000.000000.00000longerK562AQR
RIPDPRENSG00000090857.9chr16+7016268670163025701626867016276870162861701630250.145000.009150.07496includedK562EFTUD2
MXEPDPRENSG00000090857.9chr16+70164325701644477016520470165322701628617016302570166053701662030.178000.005530.058551includedK562DROSHA
MXEPDPRENSG00000090857.9chr16+70164325701644477016520470165322701628617016302570166053701662030.208000.000940.022381includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PDPR is not avaliable on ENCORE database.