NPDC1

General Information

Gene Name       : NPDC1
Gene ID             : ENSG00000107281.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NPDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NPDC1ENSG00000107281.90.030.030.03ENCSR000AEF
HepG2NPDC1ENSG00000107281.98.881.185.03ENCSR985KAT
K562NPDC1ENSG00000107281.90.150.040.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NPDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NPDC1 RNA is bound by 16 proteins.  







eCLIP assay for NPDC1 is not avaliable on ENCORE database.





16 proteins are bound to NPDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9139934074139934122-3'-UTR,intron-Distal,intron-Proximal3.925513.80435HepG2LSM11
chr9139937859139937963-5'-UTR,CDS,intron-Distal3.728764.46210HepG2FASTKD2
chr9139938425139938482-5'-UTR,intron-Distal4.080765.07081HepG2XPO5
chr9139938093139938132-5'-UTR,intron-Distal4.891514.33458HepG2XPO5
chr9139935384139935434-CDS,intron-Distal,intron-Proximal3.578995.58370HepG2PPIG
chr9139934924139935000-CDS,intron-Distal,intron-Proximal3.032693.05710HepG2PRPF8
chr9139937542139937617-CDS,intron-Distal,intron-Proximal4.123644.55101HepG2PRPF4
chr9139937461139937552-CDS,intron-Distal,intron-Proximal4.842335.26064K562AQR
chr9139937544139937628-CDS,intron-Distal,intron-Proximal3.082615.65158HepG2SF3B4
chr9139940289139940335-CDS,intron-Distal3.722957.38298HepG2AQR
chr9139937377139937413-CDS,intron-Distal,intron-Proximal5.353716.76175HepG2PPIG
chr9139934420139934460-CDS,intron-Distal,intron-Proximal4.039585.52342HepG2PPIG
chr9139935091139935151-CDS,intron-Distal,intron-Proximal4.903995.68502HepG2PRPF8
chr9139937477139937540-CDS,intron-Distal,intron-Proximal3.920718.74054HepG2BUD13
chr9139935514139935550-CDS,intron-Distal,intron-Proximal4.843605.56813HepG2PPIG
chr9139935551139935593-CDS,intron-Distal4.966165.56813HepG2PPIG
chr9139937492139937619-CDS,intron-Distal,intron-Proximal3.261267.71485HepG2AQR
chr9139937466139937535-CDS,intron-Distal,intron-Proximal4.400197.46483HepG2PRPF8
chr9139937450139937531-CDS,intron-Distal,intron-Proximal4.2007414.66124HepG2PPIG
chr9139935621139935640-CDS,intron-Distal,intron-Proximal3.783953.86355HepG2PPIG
chr9139937476139937539-CDS,intron-Distal,intron-Proximal4.224263.70678K562BUD13
chr9139938822139938875-intron-Distal4.108427.63744HepG2FKBP4
chr9139940216139940290-intron-Distal4.039237.83642HepG2BUD13
chr9139934607139934686-intron-Distal,intron-Proximal3.492293.59783HepG2HNRNPK
chr9139939828139939899-intron-Distal3.498924.61500HepG2HNRNPM
chr9139939154139939206-intron-Distal3.598706.53044HepG2FKBP4
chr9139940218139940323-intron-Distal3.376694.17944K562BUD13
chr9139938924139938968-intron-Distal4.082195.20772HepG2FKBP4
chr9139940230139940287-intron-Distal3.539885.17182HepG2RBM22
chr9139938843139938883-intron-Distal3.993903.71028HepG2NKRF
chr9139940223139940281-intron-Distal3.288995.84601HepG2PRPF8
chr9139934686139934756-intron-Distal,intron-Proximal4.147513.82414HepG2HNRNPK
chr9139940234139940293-intron-Distal4.347455.20772HepG2FKBP4
chr9139939914139939963-intron-Distal5.400907.02466HepG2FKBP4
chr9139939477139939526-intron-Distal3.780314.09469HepG2XPO5
chr9139939009139939053-intron-Distal3.050423.12257HepG2CSTF2T
chr9139940281139940313-intron-Distal3.3501211.14388HepG2PRPF8
chr9139940233139940278-intron-Distal3.388224.64240HepG2XRN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NPDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NPDC1 is not available on ENCORE database.

  • 86 RBPs can affect the levels of NPDC1.  








The Knockdown/knockout RNA-Seq assay for NPDC1 is not available on ENCORE database.





86 RBPs can affect the gene expression of NPDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NPDC1ENSG00000107281.5481.38940120.142802.0024022.2489020.89930HepG2AKAP1
NPDC1ENSG00000107281.5209.6782099.387501.076904.447503.46180HepG2ASCC1
NPDC1ENSG00000107281.571.34610162.38770-1.186505.201903.33820HepG2ATP5C1
NPDC1ENSG00000107281.5477.53530247.286600.949308.331807.24830HepG2AUH
NPDC1ENSG00000107281.5244.29150101.126801.272306.438504.98210HepG2BCCIP
NPDC1ENSG00000107281.5195.5018087.855201.153905.210304.01230HepG2BCLAF1
NPDC1ENSG00000107281.533.3078082.95750-1.316503.999203.29410HepG2BOP1
NPDC1ENSG00000107281.5389.40360180.591701.108403.531702.41680HepG2CCAR1
NPDC1ENSG00000107281.5430.49170231.301400.8961010.782509.64520HepG2CKAP4
NPDC1ENSG00000107281.5294.29450148.229000.989306.356504.73760HepG2CPSF7
NPDC1ENSG00000107281.5147.4793072.568501.023003.289402.17860HepG2YBX3
NPDC1ENSG00000107281.5233.58550132.711200.815605.099204.27460HepG2CELF1
NPDC1ENSG00000107281.5529.45440115.043502.2022031.1801029.32720HepG2DDX3X
NPDC1ENSG00000107281.5415.7876099.437102.0639020.0691018.26310HepG2DDX55
NPDC1ENSG00000107281.5530.4850098.929002.422708.153107.14390HepG2DDX6
NPDC1ENSG00000107281.577.69250221.34660-1.5105012.3752011.15520HepG2DKC1
NPDC1ENSG00000107281.5205.3850071.249101.527309.863908.59880HepG2DNAJC21
NPDC1ENSG00000107281.5189.4182070.631201.4231011.6645010.42590HepG2DNAJC2
NPDC1ENSG00000107281.5585.0674094.999302.6225014.5079013.21790HepG2EIF2S1
NPDC1ENSG00000107281.584.62170140.78160-0.734402.807401.96520HepG2EIF4G1
NPDC1ENSG00000107281.5298.61220134.862401.146702.171901.44360HepG2EIF4G2
NPDC1ENSG00000107281.5430.78840283.941700.601303.584202.91330HepG2ETF1
NPDC1ENSG00000107281.5215.23920106.026901.021402.919602.20740HepG2FXR1
NPDC1ENSG00000107281.5189.4268098.275800.946603.092502.39070HepG2G3BP1
NPDC1ENSG00000107281.5334.94000220.877500.600604.569803.34220HepG2HDGF
NPDC1ENSG00000107281.5220.81350113.820000.956004.784402.93950HepG2HNRNPA0
NPDC1ENSG00000107281.5359.3153099.699301.8495019.5281017.82330HepG2HNRNPK
NPDC1ENSG00000107281.5352.81430130.006801.4402019.3723017.73940HepG2HNRNPL
NPDC1ENSG00000107281.530.8744082.37110-1.415704.101303.35050HepG2HNRNPLL
NPDC1ENSG00000107281.5148.4035079.485300.900702.715202.11440HepG2HNRNPU
NPDC1ENSG00000107281.5327.4397099.866801.7131016.2034014.73640HepG2IGF2BP2
NPDC1ENSG00000107281.5202.9824093.835001.113102.610601.65730HepG2IGF2BP3
NPDC1ENSG00000107281.5169.4106081.191001.061006.502605.42520HepG2ILF2
NPDC1ENSG00000107281.5296.25780128.238601.207902.709101.53080HepG2KHDRBS1
NPDC1ENSG00000107281.5183.3558086.921101.076805.190903.63920HepG2LARP7
NPDC1ENSG00000107281.5384.09940106.633601.848705.217504.37510HepG2MATR3
NPDC1ENSG00000107281.5351.03730109.125401.6855015.7690014.34020HepG2NCBP2
NPDC1ENSG00000107281.5300.96200141.514101.088506.052604.92590HepG2NOL12
NPDC1ENSG00000107281.5271.20570116.110901.2238011.6939010.58470HepG2PCBP1
NPDC1ENSG00000107281.5129.5625070.893900.869803.698702.85850HepG2PPIL4
NPDC1ENSG00000107281.550.45690113.22630-1.166104.961103.95660HepG2PRPF4
NPDC1ENSG00000107281.5149.7287085.366500.810502.765701.54930HepG2PRPF6
NPDC1ENSG00000107281.5378.29190118.169201.6785023.4351022.13740HepG2PTBP1
NPDC1ENSG00000107281.5219.82180135.082900.702403.324802.67990HepG2PUF60
NPDC1ENSG00000107281.5364.05490143.390901.3441018.1313016.88310HepG2PUM1
NPDC1ENSG00000107281.5414.12280143.289601.531005.327404.41050HepG2PUM2
NPDC1ENSG00000107281.524.5070078.33470-1.676504.228203.36620HepG2RAVER1
NPDC1ENSG00000107281.5294.20080202.607800.538002.792401.93260HepG2RBM15
NPDC1ENSG00000107281.5407.21370237.317800.778906.811006.08340HepG2RBM22
NPDC1ENSG00000107281.5220.25060131.492700.744104.095903.46100HepG2NELFE
NPDC1ENSG00000107281.5184.47290122.500700.590502.377601.80020HepG2RECQL
NPDC1ENSG00000107281.5166.9681096.660000.788502.693101.90270HepG2RPS2
NPDC1ENSG00000107281.5263.14280135.127300.961405.207504.10840HepG2RPS3A
NPDC1ENSG00000107281.5163.5956070.783001.208604.910804.09310HepG2SAFB2
NPDC1ENSG00000107281.5229.56950127.241800.851304.193802.59130HepG2SART3
NPDC1ENSG00000107281.5328.00090122.989901.4151015.4672014.24100HepG2SF3B4
NPDC1ENSG00000107281.5210.9934082.541201.3539010.836209.69720HepG2SMN1
NPDC1ENSG00000107281.5800.82870268.033001.5790039.1462037.83160HepG2SRFBP1
NPDC1ENSG00000107281.558.37790128.39100-1.137002.930502.44760HepG2SRSF1
NPDC1ENSG00000107281.530.65480232.70090-2.9243033.6363032.30400HepG2SSB
NPDC1ENSG00000107281.5415.27190133.574501.6363015.1592012.60940HepG2SSRP1
NPDC1ENSG00000107281.5282.80230121.379101.220207.477005.57460HepG2STAU1
NPDC1ENSG00000107281.5201.10320117.596400.774003.055101.89600HepG2STIP1
NPDC1ENSG00000107281.5219.85880151.681900.535402.516601.91810HepG2SUCLG1
NPDC1ENSG00000107281.5189.0697098.975000.933703.163202.44480HepG2SUPV3L1
NPDC1ENSG00000107281.5259.5928066.331501.968406.357204.95070HepG2TFIP11
NPDC1ENSG00000107281.5147.7919077.220800.936404.153703.56810HepG2TIAL1
NPDC1ENSG00000107281.5234.2395077.926201.5877015.6340014.44620HepG2TRIM56
NPDC1ENSG00000107281.594.33400155.51760-0.721202.247001.67510HepG2U2AF1
NPDC1ENSG00000107281.5387.63850139.673001.4726010.858109.15630HepG2UBE2L3
NPDC1ENSG00000107281.5217.4984058.458601.8954015.2091013.46550HepG2UCHL5
NPDC1ENSG00000107281.578.09420147.50300-0.917502.880502.16980HepG2UPF1
NPDC1ENSG00000107281.5179.3952090.596200.985502.669501.68230HepG2UPF2
NPDC1ENSG00000107281.5224.17880142.408600.654503.348902.70180HepG2UTP3
NPDC1ENSG00000107281.562.19940111.73330-0.845103.021002.32510HepG2ZC3H8
NPDC1ENSG00000107281.563.9063029.846501.098302.852302.27630K562AGGF1
NPDC1ENSG00000107281.592.5678031.059001.575404.558603.71300K562AKAP8L
NPDC1ENSG00000107281.537.8872011.312501.743703.087802.07700K562BCLAF1
NPDC1ENSG00000107281.550.6379017.675901.518302.957901.86140K562CCAR1
NPDC1ENSG00000107281.541.5813016.469301.336102.695801.41150K562DDX6
NPDC1ENSG00000107281.570.2688033.407201.072603.246002.28730K562DKC1
NPDC1ENSG00000107281.5130.1230044.373701.552006.915305.44750K562EIF4G2
NPDC1ENSG00000107281.53.2891017.65040-2.423902.356501.78950K562FXR1
NPDC1ENSG00000107281.5123.2902029.072502.0842012.1530010.30360K562HNRNPU
NPDC1ENSG00000107281.523.222905.917501.972402.261601.36100K562IGF2BP2
NPDC1ENSG00000107281.521.677306.206501.804202.258801.43250K562MATR3
NPDC1ENSG00000107281.527.231507.266901.905802.447901.62800K562METAP2
NPDC1ENSG00000107281.564.138309.856002.702007.769406.10250K562PSIP1
NPDC1ENSG00000107281.569.8410030.009501.218603.581702.92090K562RBM15
NPDC1ENSG00000107281.528.888909.011601.680602.337701.43080K562RCC2
NPDC1ENSG00000107281.557.1619019.620601.542603.335301.64180K562SBDS
NPDC1ENSG00000107281.548.6867019.455901.323202.932701.63040K562SLBP
NPDC1ENSG00000107281.553.0977025.820501.040002.138201.30600K562SRPK2
NPDC1ENSG00000107281.525.277205.994902.075902.918802.19240K562TARDBP
NPDC1ENSG00000107281.523.255705.782702.007702.479901.71110K562TIA1
NPDC1ENSG00000107281.532.582009.477501.781402.644601.73270K562TIAL1
NPDC1ENSG00000107281.566.3311027.860801.251303.688001.75230K562UPF2
NPDC1ENSG00000107281.5114.3949048.899601.226005.051503.30530K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NPDC1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of NPDC1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for NPDC1 is not avaliable on ENCORE database.