NFIA

General Information

Gene Name : NFIA
Gene ID : ENSG00000162599.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NFIA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NFIA	ENSG00000162599.15	0.00	0.01	0.01	ENCSR000AEF
HepG2	NFIA	ENSG00000162599.15	6.19	7.58	6.88	ENCSR985KAT
K562	NFIA	ENSG00000162599.15	6.58	5.70	6.14	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NFIA is not avaliable on ENCORE database.

Proteins bound to RNA

NFIA RNA is bound by 43 proteins.

CanvasJS.com

eCLIP assay for NFIA is not avaliable on ENCORE database.

43 proteins are bound to NFIA RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	61607226	61607294	+	intron-Distal	5.74079	42.28866	HepG2	QKI
chr1	61607294	61607314	+	intron-Distal	7.23429	34.52345	HepG2	QKI
chr1	61776384	61776510	+	intron-Distal	7.04222	31.29524	HepG2	PTBP1
chr1	61578453	61578485	+	intron-Distal	5.90729	30.59499	HepG2	QKI
chr1	61598701	61598775	+	intron-Distal	5.49828	30.59266	HepG2	CSTF2
chr1	61553923	61554066	+	5'-UTR,CDS,intron-Distal	3.57793	29.35380	HepG2	BCLAF1
chr1	61592128	61592156	+	intron-Distal	4.74228	27.67803	HepG2	HNRNPL
chr1	61548338	61548427	+	5'-UTR,intron-Distal,intron-Proximal	3.59051	25.96118	K562	PTBP1
chr1	61587900	61587998	+	intron-Distal	4.72921	25.52727	HepG2	QKI
chr1	61592078	61592114	+	intron-Distal	4.18156	25.00325	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 221 entries

eCLIP assay for NFIA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NFIA is not available on ENCORE database.
69 RBPs can affect the levels of NFIA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NFIA is not available on ENCORE database.

69 RBPs can affect the gene expression of NFIA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NFIA	ENSG00000162599.11	919.72100	471.81750	0.96290	19.83550	18.09550	HepG2	PRPF4
NFIA	ENSG00000162599.11	780.37220	402.07400	0.95660	16.59430	15.24160	HepG2	DKC1
NFIA	ENSG00000162599.11	151.20710	344.50220	-1.18800	8.61280	7.33080	HepG2	DDX55
NFIA	ENSG00000162599.11	356.98850	580.07720	-0.70040	7.13980	6.39890	HepG2	RBM22
NFIA	ENSG00000162599.11	950.27840	650.96420	0.54570	7.33550	5.81930	K562	EIF4G2
NFIA	ENSG00000162599.11	305.33290	493.80160	-0.69350	7.13190	5.75070	HepG2	HNRNPA2B1
NFIA	ENSG00000162599.11	395.09490	689.44420	-0.80320	6.23870	5.47710	HepG2	AKAP1
NFIA	ENSG00000162599.11	379.66370	624.89500	-0.71890	6.77730	5.39420	K562	PPIG
NFIA	ENSG00000162599.11	624.79300	428.06390	0.54550	6.16400	5.30950	HepG2	PUS1
NFIA	ENSG00000162599.11	668.44010	442.71650	0.59430	5.97260	5.02880	K562	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 74 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NFIA is not available on ENCORE database.

8 RBPs can affect the splicing of NFIA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NFIA	ENSG00000162599.11	chr1	+	61851542	61851596			61848908	61849037	61869775	61869939	0.15300	0.00002	0.00500	included	HepG2	LARP4
MXE	NFIA	ENSG00000162599.11	chr1	+	61818121	61818239	61824818	61824946	61798183	61798258	61848908	61849037	-0.40000	0.00012	0.00134	2included	HepG2	U2AF2
SE	NFIA	ENSG00000162599.11	chr1	+	61892136	61892228			61872233	61872399	61920974	61921196	-0.21800	0.00029	0.01136	excluded	HepG2	SF3A3
SE	NFIA	ENSG00000162599.11	chr1	+	61892136	61892228			61872233	61872399	61920974	61928465	-0.69300	0.00038	0.01024	excluded	K562	U2AF1
SE	NFIA	ENSG00000162599.11	chr1	+	61865047	61865192			61848908	61849037	61869775	61869954	-0.21700	0.00053	0.02463	excluded	K562	PTBP1
SE	NFIA	ENSG00000162599.11	chr1	+	61851542	61851596			61848908	61849037	61869775	61869939	0.20800	0.00068	0.03420	included	HepG2	SFPQ
SE	NFIA	ENSG00000162599.11	chr1	+	61892136	61892228			61872233	61872399	61920974	61921196	-0.45300	0.00155	0.01762	excluded	K562	AQR
MXE	NFIA	ENSG00000162599.11	chr1	+	61818121	61818239	61824818	61824946	61798183	61798258	61848908	61849037	-0.32600	0.00318	0.07616	2included	HepG2	RBFOX2
MXE	NFIA	ENSG00000162599.11	chr1	+	61824818	61824946	61848908	61849037	61818121	61818239	61869775	61869954	-0.24700	0.00446	0.02776	2included	HepG2	U2AF2

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NFIA

General Information

Functions

Localization

Domains (AlphaFold: NFIA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NFIA is not avaliable on ENCORE database.

43 proteins are bound to NFIA RNA:

eCLIP assay for NFIA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NFIA is not available on ENCORE database.

69 RBPs can affect the gene expression of NFIA :

The Knockdown/knockout RNA-Seq assay for NFIA is not available on ENCORE database.

8 RBPs can affect the splicing of NFIA :

The Knockdown/knockout RNA-Seq assay for NFIA is not avaliable on ENCORE database.