NDUFB3

General Information

Gene Name       : NDUFB3
Gene ID             : ENSG00000119013.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFB3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFB3ENSG00000119013.8119.80103.64111.72ENCSR000AEF
HepG2NDUFB3ENSG00000119013.881.91111.7196.81ENCSR985KAT
K562NDUFB3ENSG00000119013.893.5784.8589.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFB3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFB3 RNA is bound by 7 proteins.  







eCLIP assay for NDUFB3 is not avaliable on ENCORE database.





7 proteins are bound to NDUFB3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2201950360201950385+3'-UTR4.139389.22606K562YBX3
chr2201950390201950439+3'-UTR3.9289011.09436K562PABPC4
chr2201950333201950440+3'-UTR,CDS4.604968.81208HepG2LARP4
chr2201943602201943646+3'-UTR,5'-UTR,CDS,intron-Proximal3.7829319.06124K562DDX3X
chr2201950335201950360+3'-UTR3.251086.40723K562YBX3
chr2201950399201950439+3'-UTR4.202234.55651HepG2SUB1
chr2201936734201936783+5'-UTR,intron-Distal,intron-Proximal4.1186717.55270K562DDX3X
chr2201943657201943743+CDS3.450113.68471HepG2BCLAF1
chr2201943637201943717+CDS5.313477.26512HepG2LARP4
chr2201950180201950242+CDS,intron-Proximal3.551634.75351K562LIN28B
chr2201943670201943730+CDS3.8935010.40970K562LIN28B
chr2201943730201943746+CDS,intron-Proximal3.480417.65019K562LIN28B
chr2201950195201950267+CDS4.894175.77937HepG2LARP4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFB3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFB3 is not available on ENCORE database.

  • 77 RBPs can affect the levels of NDUFB3.  








The Knockdown/knockout RNA-Seq assay for NDUFB3 is not available on ENCORE database.





77 RBPs can affect the gene expression of NDUFB3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFB3ENSG00000119013.4635.94890523.700300.280102.103601.55910HepG2ACO1
NDUFB3ENSG00000119013.4380.38490523.63820-0.461102.832801.82540HepG2ADAR
NDUFB3ENSG00000119013.41614.54440885.246400.866909.695408.76600HepG2AKAP1
NDUFB3ENSG00000119013.4961.76730732.485200.392802.561201.80420HepG2ASCC1
NDUFB3ENSG00000119013.4601.37390446.662000.429002.810802.20810HepG2BOP1
NDUFB3ENSG00000119013.4562.37240442.050100.347202.036301.36760HepG2CALR
NDUFB3ENSG00000119013.4932.34270695.905500.421902.938302.14170HepG2CIRBP
NDUFB3ENSG00000119013.4546.52050385.491400.503502.174801.50110HepG2CNOT7
NDUFB3ENSG00000119013.41290.52970848.038100.605705.627904.76500HepG2DDX3X
NDUFB3ENSG00000119013.4923.43130692.418000.415302.785502.01040HepG2DDX55
NDUFB3ENSG00000119013.4387.49780522.59660-0.431503.960103.20750HepG2DNAJC2
NDUFB3ENSG00000119013.4405.24740524.05860-0.370902.322901.33150HepG2EIF3G
NDUFB3ENSG00000119013.4875.701901116.51670-0.350503.715103.03610HepG2ETF1
NDUFB3ENSG00000119013.4987.70130780.769500.339102.015001.42120HepG2FXR1
NDUFB3ENSG00000119013.4555.56970768.89700-0.468803.140202.19090HepG2G3BP2
NDUFB3ENSG00000119013.4309.06940464.87900-0.588903.302602.60900HepG2GPKOW
NDUFB3ENSG00000119013.4211.22950325.68950-0.624702.927301.51690HepG2HNRNPA0
NDUFB3ENSG00000119013.4546.26210726.70280-0.411803.709402.88860HepG2HNRNPF
NDUFB3ENSG00000119013.4237.04020588.21150-1.3112025.0463023.37240HepG2HNRNPU
NDUFB3ENSG00000119013.4556.33860715.59980-0.363202.469101.78380HepG2IGF2BP1
NDUFB3ENSG00000119013.4448.69610600.84110-0.421204.294203.40050HepG2ILF2
NDUFB3ENSG00000119013.4782.338801096.47080-0.487005.861704.75470HepG2NOL12
NDUFB3ENSG00000119013.4422.61440716.05400-0.760706.767705.64650HepG2PABPC4
NDUFB3ENSG00000119013.4399.86720524.64030-0.391802.875802.12700HepG2PPIL4
NDUFB3ENSG00000119013.4937.944901111.05780-0.244402.625802.04480HepG2PUM1
NDUFB3ENSG00000119013.41159.51640933.191800.313202.978502.44640HepG2RBM22
NDUFB3ENSG00000119013.4543.48000736.14370-0.437804.125103.39210HepG2RECQL
NDUFB3ENSG00000119013.4435.84300607.81070-0.479802.246101.39250HepG2RPS10
NDUFB3ENSG00000119013.4705.318501003.54550-0.508807.848206.75800HepG2SLBP
NDUFB3ENSG00000119013.4265.95010498.93510-0.907702.677101.39620HepG2SNRNP200
NDUFB3ENSG00000119013.41400.59110771.736800.8598020.7937019.75190HepG2SRSF1
NDUFB3ENSG00000119013.4764.867701033.40240-0.434105.463404.62740HepG2SRSF5
NDUFB3ENSG00000119013.4584.72140713.94410-0.288102.042301.43420HepG2SRSF7
NDUFB3ENSG00000119013.4742.32060915.08250-0.301902.956602.43020HepG2SSB
NDUFB3ENSG00000119013.4208.85490336.39660-0.687703.484902.23780HepG2STIP1
NDUFB3ENSG00000119013.4521.62680339.424200.619803.480101.97830HepG2SUGP2
NDUFB3ENSG00000119013.4244.87340432.32900-0.820106.274905.24310HepG2TARDBP
NDUFB3ENSG00000119013.4417.23000637.37720-0.611305.784204.58720HepG2TIA1
NDUFB3ENSG00000119013.4465.11570576.66300-0.310102.251201.73220HepG2TRIM56
NDUFB3ENSG00000119013.4818.687501022.51230-0.320702.449001.63010HepG2TUFM
NDUFB3ENSG00000119013.4370.52220478.90290-0.370201.855401.33030HepG2U2AF1
NDUFB3ENSG00000119013.4314.33000580.91540-0.886002.277301.39360HepG2U2AF2
NDUFB3ENSG00000119013.4809.619701082.29260-0.418802.599401.78890HepG2UBE2L3
NDUFB3ENSG00000119013.4527.15940407.255500.372202.235601.55320HepG2UCHL5
NDUFB3ENSG00000119013.4532.14480427.514300.315702.189001.58130HepG2ZC3H8
NDUFB3ENSG00000119013.4379.78090618.19450-0.702904.733502.99440HepG2ZRANB2
NDUFB3ENSG00000119013.41381.362101030.091400.423206.021405.23580K562AGGF1
NDUFB3ENSG00000119013.41518.945701071.856700.502905.478804.54270K562AKAP8L
NDUFB3ENSG00000119013.41405.629901878.06620-0.418003.561702.91260K562AQR
NDUFB3ENSG00000119013.4908.785501153.84930-0.344403.702702.58490K562BCLAF1
NDUFB3ENSG00000119013.4296.07390409.56710-0.468102.640601.61890K562CCAR1
NDUFB3ENSG00000119013.4436.41400654.94990-0.585705.321604.24140K562CPSF6
NDUFB3ENSG00000119013.4674.36240875.36630-0.376403.251402.09410K562CSTF2
NDUFB3ENSG00000119013.4982.134901194.01330-0.281802.817802.16030K562DDX47
NDUFB3ENSG00000119013.4979.311701192.59570-0.284302.630601.92570K562EIF2S2
NDUFB3ENSG00000119013.4256.65810416.61570-0.698902.478701.52990K562EIF3A
NDUFB3ENSG00000119013.4783.378101009.01150-0.365203.434602.55360K562EIF3G
NDUFB3ENSG00000119013.4624.04610818.41990-0.391202.913002.07140K562EIF4A3
NDUFB3ENSG00000119013.4450.11070625.33860-0.474402.942002.12420K562GPKOW
NDUFB3ENSG00000119013.4498.95210737.73800-0.564205.011604.23120K562HNRNPC
NDUFB3ENSG00000119013.41456.65120768.884000.9217012.119609.83150K562HNRNPM
NDUFB3ENSG00000119013.4592.311001145.13270-0.9511019.5499017.30110K562HNRNPU
NDUFB3ENSG00000119013.4944.496901250.92750-0.405403.615002.21140K562IGF2BP3
NDUFB3ENSG00000119013.4952.186001292.53360-0.440904.302703.25180K562MAGOH
NDUFB3ENSG00000119013.4436.28160610.39070-0.484503.012202.09660K562METAP2
NDUFB3ENSG00000119013.4690.78830940.86340-0.445703.783402.92650K562NSUN2
NDUFB3ENSG00000119013.41140.57570842.057100.437703.681502.81600K562PRPF8
NDUFB3ENSG00000119013.41885.613602210.56120-0.229402.650301.71060K562PUM2
NDUFB3ENSG00000119013.41411.783201062.988200.409303.212002.63450K562PUS1
NDUFB3ENSG00000119013.4753.992201204.14550-0.675408.280706.71380K562RBM22
NDUFB3ENSG00000119013.4493.88090647.86160-0.391502.492401.46720K562SAFB
NDUFB3ENSG00000119013.4411.20580572.03830-0.476303.044201.95590K562SRFBP1
NDUFB3ENSG00000119013.4491.96770648.08250-0.397602.604901.58980K562SRSF4
NDUFB3ENSG00000119013.4896.095001162.65810-0.375702.903001.82360K562SRSF5
NDUFB3ENSG00000119013.41388.733501850.67150-0.414305.578903.53860K562SUCLG1
NDUFB3ENSG00000119013.4469.32460815.56890-0.797204.796003.42760K562SUPV3L1
NDUFB3ENSG00000119013.4955.671601245.93440-0.382602.941102.21180K562TARDBP
NDUFB3ENSG00000119013.4873.337101201.84370-0.460604.819803.69410K562TIA1
NDUFB3ENSG00000119013.4433.27570636.20880-0.554203.769402.67290K562TIAL1
NDUFB3ENSG00000119013.4471.46070675.82440-0.519503.834902.68540K562TRIM56
NDUFB3ENSG00000119013.41937.793902391.87590-0.303702.993701.53040K562UBE2L3
NDUFB3ENSG00000119013.4635.92710997.62580-0.649606.711405.64620K562UPF1
NDUFB3ENSG00000119013.4833.625001092.88120-0.390702.721901.53100K562UTP3
NDUFB3ENSG00000119013.4617.41790853.62320-0.467404.135003.05800K562WDR3
NDUFB3ENSG00000119013.41708.388402225.04630-0.381204.116002.53660K562WRN
NDUFB3ENSG00000119013.4620.24670878.59990-0.502402.528101.38810K562XRN2
NDUFB3ENSG00000119013.41416.235502115.76120-0.579107.790606.22230K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFB3 is not available on ENCORE database.





13 RBPs can affect the splicing of NDUFB3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFB3ENSG00000119013.4chr2+2019370012019370842019367522019367822019436032019437450.067000.000420.00994includedHepG2U2AF1
SENDUFB3ENSG00000119013.4chr2+2019370012019370842019367522019367822019436032019437450.077000.000370.00605includedHepG2U2AF2
SENDUFB3ENSG00000119013.4chr2+2019370012019370842019367522019367822019436032019437450.064000.000040.06959includedK562DHX30
SENDUFB3ENSG00000119013.4chr2+2019370012019370842019367522019367822019436032019437450.064000.000700.04567includedHepG2FTO
SENDUFB3ENSG00000119013.4chr2+201937832201937876201937061201937084201943603201943745-0.130000.000200.04777excludedK562SBDS
SENDUFB3ENSG00000119013.4chr2+2019370012019370842019367522019367822019436032019437450.053000.000020.00130includedK562HNRNPU
SENDUFB3ENSG00000119013.4chr2+201937001201937084201936752201936782201943603201943745-0.087000.000000.00068excludedK562CPSF6
SENDUFB3ENSG00000119013.4chr2+2019370012019370842019367522019367822019436032019437450.072000.000010.00057includedHepG2HNRNPU
SENDUFB3ENSG00000119013.4chr2+2019370012019370842019367522019367822019436032019437450.052000.001180.02208includedK562HNRNPC
MXENDUFB3ENSG00000119013.4chr2+201937061201937084201937793201937876201936730201936782201943603201943745-0.465000.000550.014602includedHepG2SRSF1
MXENDUFB3ENSG00000119013.4chr2+201937061201937084201937832201937876201936730201936782201943603201943745-0.384000.004590.074182includedHepG2SRSF1
MXENDUFB3ENSG00000119013.4chr2+201937001201937084201937793201937876201936752201936782201943603201943745-0.296000.001560.033092includedHepG2SRSF1
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019378322019378762019367522019367822019436032019437450.143000.011720.097441includedK562DROSHA
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019377932019378762019367522019367822019436032019437450.140000.001410.023081includedK562DROSHA
MXENDUFB3ENSG00000119013.4chr2+2019370612019370842019377932019378762019367302019367822019436032019437450.183000.008690.092141includedK562U2AF1
MXENDUFB3ENSG00000119013.4chr2+201937061201937084201937793201937876201936730201936782201943603201943745-0.450000.000900.034032includedHepG2TAF15
MXENDUFB3ENSG00000119013.4chr2+201937001201937084201937793201937876201936752201936782201943603201943745-0.345000.000830.032482includedHepG2TAF15
MXENDUFB3ENSG00000119013.4chr2+2019369882019370842019377782019378762019367302019367822019436032019437450.149000.001780.046931includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019369882019370842019378322019378762019367302019367822019436032019437450.165000.000980.032211includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019369882019370842019378422019378762019367302019367822019436032019437450.161000.001370.040011includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019370612019370842019377782019378762019367302019367822019436032019437450.159000.003830.072871includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019370612019370842019378322019378762019367302019367822019436032019437450.173000.001880.048341includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019370612019370842019378422019378762019367302019367822019436032019437450.175000.001910.048901includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019378322019378762019367522019367822019436032019437450.143000.001420.040741includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019378422019378762019367522019367822019436032019437450.138000.001920.049111includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019377782019378762019367522019367822019436032019437450.127000.002250.053871includedK562SBDS
MXENDUFB3ENSG00000119013.4chr2+2019370612019370842019377782019378762019367302019367822019436032019437450.226000.000010.000821includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019370612019370842019377932019378762019367302019367822019436032019437450.207000.000090.005741includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019370612019370842019378322019378762019367302019367822019436032019437450.250000.000000.000331includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019370612019370842019378422019378762019367302019367822019436032019437450.212000.000060.004591includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019369882019370842019377782019378762019367302019367822019436032019437450.207000.000000.000371includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019369882019370842019377932019378762019367302019367822019436032019437450.189000.000040.003491includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019369882019370842019378322019378762019367302019367822019436032019437450.231000.000000.000211includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019369882019370842019378422019378762019367302019367822019436032019437450.193000.000040.003521includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019378322019378762019367522019367822019436032019437450.202000.000000.000211includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019378422019378762019367522019367822019436032019437450.167000.000050.003621includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019377782019378762019367522019367822019436032019437450.180000.000000.000321includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+2019370012019370842019377932019378762019367522019367822019436032019437450.166000.000030.002971includedK562PPIL4
MXENDUFB3ENSG00000119013.4chr2+201937001201937084201937793201937876201936752201936782201943603201943745-0.260000.001760.081242includedHepG2DDX3X

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFB3 is not avaliable on ENCORE database.