MRPL38

General Information

Gene Name       : MRPL38
Gene ID             : ENSG00000204316.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: MRPL38)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MRPL38ENSG00000204316.128.2929.9819.13ENCSR000AEF
HepG2MRPL38ENSG00000204316.12113.5247.0880.30ENCSR985KAT
K562MRPL38ENSG00000204316.1245.9746.6446.30ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MRPL38 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MRPL38 RNA is bound by 23 proteins.  







eCLIP assay for MRPL38 is not avaliable on ENCORE database.





23 proteins are bound to MRPL38 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177389793173898002-3'-UTR,CDS,intron-Distal,intron-Proximal3.941737.70159HepG2SRSF1
chr177389795273898002-3'-UTR,CDS,intron-Distal,intron-Proximal4.346823.94601K562PCBP1
chr177389819973898268-3'-UTR,CDS,intron-Distal,intron-Proximal3.466593.03452HepG2U2AF2
chr177389810173898166-3'-UTR,CDS,intron-Distal3.033766.91015HepG2GRWD1
chr177389810073898175-3'-UTR,CDS,intron-Distal,intron-Proximal5.152339.47642K562PCBP1
chr177389793773898002-3'-UTR,CDS,intron-Distal,intron-Proximal3.075288.74848HepG2PPIG
chr177389810173898232-3'-UTR,CDS,intron-Distal3.002913.49055K562GRWD1
chr177389477473894828-3'-UTR,intron-Distal4.700874.89487HepG2LARP4
chr177389781173897877-3'-UTR,CDS,intron-Distal,intron-Proximal3.054703.22540HepG2G3BP1
chr177389816273898236-3'-UTR,CDS,intron-Distal,intron-Proximal3.681665.69815HepG2G3BP1
chr177389817773898235-3'-UTR,CDS,intron-Distal4.855475.66159K562LIN28B
chr177389473973894880-3'-UTR,intron-Distal6.3966525.55192K562PABPC4
chr177389794973898001-3'-UTR,CDS,intron-Distal,intron-Proximal4.219528.68179HepG2BUD13
chr177389474473894782-3'-UTR,intron-Distal5.559035.06516K562PUM2
chr177390075873900801-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.185943.67794HepG2DDX3X
chr177390088973900966-5'-UTR,CDS,intron-Distal,intron-Proximal4.365449.06301K562DDX3X
chr177390061673900674-5'-UTR,CDS,intron-Distal,intron-Proximal3.099674.79633HepG2G3BP1
chr177390063573900744-5'-UTR,CDS,intron-Distal,intron-Proximal4.746076.37834K562BUD13
chr177390068773900719-5'-UTR,CDS,intron-Distal,intron-Proximal3.591508.85042HepG2GRWD1
chr177390075673900806-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.753673.42611HepG2SRSF1
chr177390064773900687-5'-UTR,CDS,intron-Distal,intron-Proximal3.819347.12207HepG2GRWD1
chr177390093073900972-5'-UTR,CDS,intron-Distal,intron-Proximal4.190237.77439HepG2DDX3X
chr177390076673900819-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.9171927.37289K562SF3B4
chr177390076273900852-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.6464314.23729K562EFTUD2
chr177390075173900801-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.817479.27595K562DDX3X
chr177390076373900828-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.3340622.64813HepG2PRPF8
chr177390075973900853-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.895723.46348HepG2XRN2
chr177390076073900856-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.3870710.72725K562BUD13
chr177390077073900855-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.646026.03140HepG2PRPF4
chr177390076173900855-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.1352212.39952HepG2EFTUD2
chr177390075273900866-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.521535.54036HepG2AQR
chr177390064873900738-5'-UTR,CDS,intron-Distal,intron-Proximal3.2899012.87034HepG2PPIG
chr177390075973900860-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.2601727.80585HepG2BUD13
chr177390062173900741-5'-UTR,CDS,intron-Distal,intron-Proximal3.745043.05347HepG2UCHL5
chr177389735173897414-3'-UTR,CDS,intron-Distal,intron-Proximal4.1254414.01870HepG2SF3B4
chr177389724373897292-3'-UTR,CDS,intron-Distal,intron-Proximal3.387537.20533HepG2EFTUD2
chr177389572373895807-3'-UTR,CDS,intron-Distal,intron-Proximal4.3160217.05551K562SF3B4
chr177389575473895836-3'-UTR,CDS,intron-Distal,intron-Proximal3.142814.67783HepG2SF3B4
chr177389565973895723-3'-UTR,CDS,intron-Distal,intron-Proximal3.517715.84135HepG2PCBP2
chr177389698973897073-3'-UTR,CDS,intron-Distal,intron-Proximal4.604397.82456K562SF3B4
chr177389771973897807-3'-UTR,CDS,intron-Distal,intron-Proximal3.334668.38944K562PRPF8
chr177389698973897066-3'-UTR,CDS,intron-Distal,intron-Proximal5.2805918.60178HepG2PRPF8
chr177389564673895694-3'-UTR,CDS,intron-Distal,intron-Proximal3.941593.61671HepG2PABPN1
chr177389730273897378-3'-UTR,CDS,intron-Distal,intron-Proximal3.2016510.14158HepG2BUD13
chr177389494173895010-3'-UTR,CDS,intron-Distal,intron-Proximal3.952316.51752K562PABPC4
chr177389555373895606-3'-UTR,CDS,intron-Distal,intron-Proximal4.181137.08947HepG2PRPF8
chr177389506573895241-3'-UTR,CDS,intron-Distal,intron-Proximal4.0092611.40182HepG2PRPF8
chr177389734173897411-3'-UTR,CDS,intron-Distal,intron-Proximal3.9568713.64049HepG2SF3A3
chr177390088773900930-CDS,intron-Distal,intron-Proximal3.458086.07214HepG2DDX3X
chr177389519973895242-3'-UTR,CDS,intron-Distal,intron-Proximal4.968786.38747HepG2AQR
chr177389726873897339-3'-UTR,CDS,intron-Distal,intron-Proximal3.056304.75490HepG2GRWD1
chr177389728073897316-3'-UTR,CDS,intron-Distal,intron-Proximal5.9074812.18059HepG2PPIG
chr177389521673895243-3'-UTR,CDS,intron-Distal,intron-Proximal4.172064.15711K562AQR
chr177389707273897108-3'-UTR,CDS,intron-Distal,intron-Proximal3.668133.12746HepG2GRWD1
chr177389733673897415-3'-UTR,CDS,intron-Distal,intron-Proximal3.841367.17119K562SF3B4
chr177389565973895756-3'-UTR,CDS,intron-Distal,intron-Proximal4.750507.19218K562PCBP1
chr177389496773895064-3'-UTR,CDS,intron-Distal,intron-Proximal5.367169.73587HepG2PABPN1
chr177389496073895063-3'-UTR,CDS,intron-Distal,intron-Proximal4.062565.65050K562DDX55
chr177389706673897106-3'-UTR,CDS,intron-Distal,intron-Proximal4.048066.23016HepG2PRPF8
chr177389706073897109-3'-UTR,CDS,intron-Distal,intron-Proximal3.7212711.11819HepG2PPIG
chr177389775473897803-3'-UTR,CDS,intron-Distal,intron-Proximal4.9304012.77088HepG2PRPF8
chr177389727373897281-intron-Distal,intron-Proximal4.583569.08333HepG2PRPF8
chr177389510173895189-intron-Distal,intron-Proximal3.431934.80460HepG2AQR
chr177389554073895581-intron-Distal,intron-Proximal4.127143.85435K562PRPF8
chr177389711173897164-intron-Distal,intron-Proximal3.324425.25867HepG2SF3B4
chr177389726173897281-intron-Distal,intron-Proximal3.831154.89208K562AQR
chr177389701573897063-intron-Distal,intron-Proximal3.560865.75231K562AQR
chr177389737473897429-intron-Distal,intron-Proximal4.5653610.18833HepG2EFTUD2
chr177389519273895216-intron-Distal,intron-Proximal5.221835.26064K562AQR
chr177389698373897044-intron-Distal,intron-Proximal5.3513518.74293HepG2EFTUD2
chr177389698873897059-intron-Distal,intron-Proximal4.815965.55733K562BUD13
chr177390082873900855-intron-Distal,intron-Proximal4.431319.10443HepG2PRPF8
chr177390081973900850-intron-Distal,intron-Proximal5.5824322.64205K562SF3B4
chr177389723773897273-intron-Distal,intron-Proximal4.7932610.85246HepG2PRPF8
chr177389539173895436-intron-Distal,intron-Proximal3.370984.09623HepG2SF3B4
chr177389723973897261-intron-Distal,intron-Proximal3.916114.98250K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MRPL38 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MRPL38 is not available on ENCORE database.

  • 79 RBPs can affect the levels of MRPL38.  








The Knockdown/knockout RNA-Seq assay for MRPL38 is not available on ENCORE database.





79 RBPs can affect the gene expression of MRPL38 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MRPL38ENSG00000204316.81222.549101025.617500.253302.637602.04130HepG2ACO1
MRPL38ENSG00000204316.8883.51110613.407800.526304.520803.77760HepG2BOP1
MRPL38ENSG00000204316.8969.62580639.474500.600403.336602.48970HepG2CNOT7
MRPL38ENSG00000204316.8651.45670508.159200.358302.831101.80160HepG2YBX3
MRPL38ENSG00000204316.81121.26590913.855300.295002.596501.97200HepG2CELF1
MRPL38ENSG00000204316.8679.92750508.847000.418003.531202.22500HepG2DDX1
MRPL38ENSG00000204316.81832.854301299.512300.496002.787302.15900HepG2DDX3X
MRPL38ENSG00000204316.8725.09880494.582000.551907.606006.59760HepG2DNAJC2
MRPL38ENSG00000204316.8716.25210926.53410-0.371402.812002.01890HepG2FUBP3
MRPL38ENSG00000204316.8848.21690541.362300.647704.384902.62540HepG2HNRNPA0
MRPL38ENSG00000204316.81286.51500895.223800.523009.683408.49720HepG2HNRNPL
MRPL38ENSG00000204316.8713.61930556.609600.358403.269402.61440HepG2HNRNPU
MRPL38ENSG00000204316.81156.38450921.613700.327302.681501.96840HepG2IGF2BP1
MRPL38ENSG00000204316.8794.73890568.555800.483106.543805.46420HepG2ILF2
MRPL38ENSG00000204316.8697.98050885.28990-0.343002.686201.88910HepG2MSI2
MRPL38ENSG00000204316.8388.00040540.15120-0.477302.908502.14100HepG2NSUN2
MRPL38ENSG00000204316.81341.010201104.548800.279802.155801.60860HepG2PCBP1
MRPL38ENSG00000204316.8727.26440496.448800.550705.404504.40440HepG2PPIL4
MRPL38ENSG00000204316.8346.95440597.81340-0.784905.258604.18050HepG2PRPF8
MRPL38ENSG00000204316.81202.42070987.393900.284103.222602.59340HepG2PUM1
MRPL38ENSG00000204316.81191.36010986.694900.271801.962701.39170HepG2PUM2
MRPL38ENSG00000204316.8972.189701217.27190-0.324303.052702.40240HepG2QKI
MRPL38ENSG00000204316.8931.075001548.76140-0.7341014.0834013.09720HepG2RBM22
MRPL38ENSG00000204316.8713.68750495.676900.525805.103704.27650HepG2SAFB2
MRPL38ENSG00000204316.81439.21110970.226300.568804.323803.47150HepG2SF3A3
MRPL38ENSG00000204316.8747.72950578.028700.371303.861703.12250HepG2SMN1
MRPL38ENSG00000204316.8829.54620535.224200.632102.291101.42890HepG2SMNDC1
MRPL38ENSG00000204316.81028.514201749.25190-0.7662020.8676019.82670HepG2SRFBP1
MRPL38ENSG00000204316.8955.329301221.38050-0.354404.251003.69570HepG2SRSF1
MRPL38ENSG00000204316.81258.71900918.376800.454706.290005.39920HepG2SRSF5
MRPL38ENSG00000204316.81085.55800919.532300.239401.937201.34380HepG2SRSF7
MRPL38ENSG00000204316.81361.386501044.484000.382203.227102.56610HepG2SUCLG1
MRPL38ENSG00000204316.8431.89650771.82550-0.837604.907604.04640HepG2SUPV3L1
MRPL38ENSG00000204316.8644.076001097.74870-0.7692010.053809.09170HepG2TAF15
MRPL38ENSG00000204316.8727.76960540.795900.428303.568103.01540HepG2TIAL1
MRPL38ENSG00000204316.8863.62640545.688600.662206.900706.08000HepG2TRIM56
MRPL38ENSG00000204316.81361.01110908.690400.582703.087902.15990HepG2TUFM
MRPL38ENSG00000204316.8697.52660455.867400.613503.196802.38200HepG2UCHL5
MRPL38ENSG00000204316.8984.05970830.723400.244302.098401.56280HepG2UTP3
MRPL38ENSG00000204316.8424.43590776.03620-0.8706016.0761014.67610HepG2ZC3H8
MRPL38ENSG00000204316.81173.64160946.322000.310503.974803.35150HepG2ZNF622
MRPL38ENSG00000204316.81264.20280932.464600.439006.196605.39930K562AGGF1
MRPL38ENSG00000204316.81284.299801024.665300.325702.635401.68320K562AKAP8
MRPL38ENSG00000204316.81331.80640970.278500.456804.559303.71350K562AKAP8L
MRPL38ENSG00000204316.81236.924901018.068600.280802.642701.75040K562ATP5C1
MRPL38ENSG00000204316.8612.90410478.612200.356702.367301.40130K562CSTF2
MRPL38ENSG00000204316.8799.44630638.270300.324702.335201.38150K562DDX3X
MRPL38ENSG00000204316.81567.43990978.481500.6797014.7435013.35400K562DDX47
MRPL38ENSG00000204316.8810.38680647.121900.324502.686701.40860K562DDX6
MRPL38ENSG00000204316.81239.264301044.046500.247202.293801.50660K562DKC1
MRPL38ENSG00000204316.8462.46880628.34340-0.442202.917801.53450K562DNAJC21
MRPL38ENSG00000204316.81282.821201062.846600.271302.496901.80750K562EIF2S2
MRPL38ENSG00000204316.8506.50430270.650800.9040010.272708.73300K562EIF3G
MRPL38ENSG00000204316.8867.40560666.835400.379302.164801.43480K562EIF4A3
MRPL38ENSG00000204316.8741.94370582.079600.350002.779501.48830K562EWSR1
MRPL38ENSG00000204316.8921.79080631.444600.545705.052303.88120K562FIP1L1
MRPL38ENSG00000204316.8933.19120693.480800.428204.600703.84760K562FXR1
MRPL38ENSG00000204316.873.68450238.31860-1.6935012.3321010.61480K562G3BP2
MRPL38ENSG00000204316.81829.462301416.277500.369203.609302.75040K562GRSF1
MRPL38ENSG00000204316.8842.86300519.385700.698403.295802.27250K562HNRNPM
MRPL38ENSG00000204316.81199.45990856.085800.486504.409303.41140K562HSPD1
MRPL38ENSG00000204316.8692.87040391.533500.823302.537801.56920K562IGF2BP2
MRPL38ENSG00000204316.8563.44340398.139000.500903.812302.36950K562IGF2BP3
MRPL38ENSG00000204316.8660.96420411.230000.684506.415105.11000K562MAGOH
MRPL38ENSG00000204316.8607.35600410.356800.565603.592102.52850K562MATR3
MRPL38ENSG00000204316.8730.83260509.845200.519402.792601.49370K562NONO
MRPL38ENSG00000204316.8574.48710402.097100.514604.259802.55770K562PCBP1
MRPL38ENSG00000204316.81167.87410716.834100.704108.346506.73690K562PPIG
MRPL38ENSG00000204316.8640.42040399.554900.680507.298506.25680K562PTBP1
MRPL38ENSG00000204316.81315.54340962.201400.451104.109403.46700K562PUS1
MRPL38ENSG00000204316.81199.87020937.560600.355802.286701.73840K562RBM15
MRPL38ENSG00000204316.8511.45620382.985400.417202.579801.76980K562RBM22
MRPL38ENSG00000204316.8541.06540373.444800.534803.579501.93850K562RBM34
MRPL38ENSG00000204316.8841.14220512.181400.715605.516304.36000K562RPS19
MRPL38ENSG00000204316.8519.84170351.777600.563303.194302.10830K562RPS3
MRPL38ENSG00000204316.8736.71560995.63980-0.434505.587004.31710K562SRPK2
MRPL38ENSG00000204316.8799.10530391.725701.0284015.4404013.76950K562SRSF1
MRPL38ENSG00000204316.8504.48120339.558900.571003.948502.65900K562SRSF4
MRPL38ENSG00000204316.8631.39380370.026700.770807.794805.92550K562SRSF5
MRPL38ENSG00000204316.8647.35950851.56150-0.395503.575201.83090K562SRSF9
MRPL38ENSG00000204316.8992.97110750.475000.403803.702802.75320K562SYNCRIP
MRPL38ENSG00000204316.8647.28850396.390000.707403.792702.95830K562TARDBP
MRPL38ENSG00000204316.8695.99700382.379200.864008.489206.94170K562TIA1
MRPL38ENSG00000204316.8601.18360375.374500.679403.947402.60820K562TRA2A
MRPL38ENSG00000204316.81131.510301452.56970-0.360403.159802.23000K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MRPL38 is not available on ENCORE database.





4 RBPs can affect the splicing of MRPL38 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSMRPL38ENSG00000204316.8chr17-7390030273900800739006207390080073898100738982350.115000.000000.00000longerK562AQR
A5SSMRPL38ENSG00000204316.8chr17-739003027390080073900620739008007389810073898235-0.097000.000060.02770shorterK562EIF3G
A5SSMRPL38ENSG00000204316.8chr17-7390030273900800739006207390080073898100738982350.102000.000220.02929longerK562EFTUD2
A5SSMRPL38ENSG00000204316.8chr17-7390030273900800739006207390080073898100738982350.110000.001240.08999longerK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MRPL38 is not avaliable on ENCORE database.