LINC00958

General Information

Gene Name       : LINC00958
Gene ID             : ENSG00000251381.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00958)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC00958ENSG00000251381.70.000.150.07ENCSR000AEF
HepG2LINC00958ENSG00000251381.71.801.841.82ENCSR985KAT
K562LINC00958ENSG00000251381.773.0274.1973.60ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00958 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00958 RNA is bound by 7 proteins.  







eCLIP assay for LINC00958 is not avaliable on ENCORE database.





7 proteins are bound to LINC00958 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr111300258513002662-intron-Distal3.602428.55178K562SAFB2
chr111300521013005283-intron-Distal3.465966.76076K562SAFB2
chr111300635813006457-intron-Distal4.722785.61723K562MATR3
chr111300391813003963-intron-Distal3.205993.46712K562SAFB2
chr111298407212984171-intron-Distal4.3055512.35757K562PUM2
chr111300162413001683-intron-Distal,intron-Proximal3.741185.95541K562SAFB2
chr111298453012984620-intron-Distal3.053275.38892K562SAFB2
chr111300335913003427-intron-Distal3.986357.64122K562SAFB2
chr111300432613004413-intron-Distal3.761609.68362K562SAFB2
chr111300508013005148-intron-Distal3.752179.47424K562SAFB2
chr111301032513010400-intron-Distal4.205333.96304K562CSTF2T
chr111300392213003978-intron-Distal3.583084.25145K562LIN28B
chr111300681113006898-intron-Distal4.0841310.99259K562TARDBP
chr111300104213001102-intron-Distal,intron-Proximal,polyA_site3.8214213.97339K562PUM2
chr111299988512999978-intron-Distal3.612988.16117K562TARDBP
chr111298894312989047-intron-Distal4.056473.14791K562HNRNPL
chr111300302713003100-intron-Distal3.5007210.86778K562SAFB2
chr111300241813002459-intron-Distal3.145843.46712K562SAFB2
chr111300274913002837-intron-Distal3.696924.70071K562SAFB2
chr111300727713007407-intron-Distal3.196227.24951K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00958 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00958 is not available on ENCORE database.

  • 70 RBPs can affect the levels of LINC00958.  








The Knockdown/knockout RNA-Seq assay for LINC00958 is not available on ENCORE database.





70 RBPs can affect the gene expression of LINC00958 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00958ENSG00000251381.272.6680037.035200.972302.244901.53370HepG2ASCC1
LINC00958ENSG00000251381.2128.7870020.339902.6625012.6859011.09250HepG2CNOT7
LINC00958ENSG00000251381.256.1835018.085901.635203.614002.65930HepG2EWSR1
LINC00958ENSG00000251381.215.9914040.64830-1.345902.139301.57920HepG2NCBP2
LINC00958ENSG00000251381.250.3912025.804100.965502.208501.66640HepG2PUM1
LINC00958ENSG00000251381.288.0511040.155001.132703.608403.03790HepG2RBM22
LINC00958ENSG00000251381.263.5346027.292701.218903.294302.62770HepG2SUCLG1
LINC00958ENSG00000251381.270.7930026.084201.440304.171203.45990HepG2UTP3
LINC00958ENSG00000251381.21453.436101841.00250-0.341002.783901.55660K562ABCF1
LINC00958ENSG00000251381.2522.981601106.34050-1.0810025.7416024.12360K562AGGF1
LINC00958ENSG00000251381.2924.198801215.64830-0.395503.402802.28890K562AKAP8
LINC00958ENSG00000251381.2578.448701151.18450-0.9929016.0834014.27300K562AKAP8L
LINC00958ENSG00000251381.21897.197801346.248200.494806.406004.39980K562APOBEC3C
LINC00958ENSG00000251381.2887.853301228.71710-0.468802.032701.51410K562AQR
LINC00958ENSG00000251381.2734.900601207.84520-0.7168012.4079010.29400K562ATP5C1
LINC00958ENSG00000251381.2626.28520800.91590-0.354803.439302.36400K562BCLAF1
LINC00958ENSG00000251381.21011.497301322.17980-0.386402.870501.66800K562CCDC124
LINC00958ENSG00000251381.2968.209901298.03930-0.422903.680901.98840K562DDX19B
LINC00958ENSG00000251381.2505.46380702.17750-0.474205.162503.34280K562DDX27
LINC00958ENSG00000251381.2273.17660419.77180-0.619804.676703.26980K562DDX3X
LINC00958ENSG00000251381.2942.452101238.83830-0.394504.618203.44360K562DKC1
LINC00958ENSG00000251381.2436.26870723.33580-0.729407.235305.70190K562EFTUD2
LINC00958ENSG00000251381.2780.602001267.47720-0.699309.748708.52370K562EIF2S2
LINC00958ENSG00000251381.2907.80140600.779300.595406.988305.73310K562EIF3G
LINC00958ENSG00000251381.2755.83210438.543600.785208.939307.46110K562EIF4A3
LINC00958ENSG00000251381.21004.28210456.064501.1388025.1975023.48870K562FXR1
LINC00958ENSG00000251381.2690.45860848.93240-0.298102.365101.31830K562GLRX3
LINC00958ENSG00000251381.21486.60810811.294700.8736016.3737014.05840K562HNRNPA1
LINC00958ENSG00000251381.2554.18070970.05830-0.807703.847702.32890K562HNRNPA2B1
LINC00958ENSG00000251381.21014.07100720.148400.493704.715703.95700K562HNRNPC
LINC00958ENSG00000251381.2460.67160643.14880-0.481403.635802.31110K562HNRNPF
LINC00958ENSG00000251381.2431.43080604.25480-0.486003.125701.80630K562HNRNPK
LINC00958ENSG00000251381.21361.98920898.449200.600109.538107.89620K562HNRNPU
LINC00958ENSG00000251381.21129.881801794.16730-0.667108.852907.44440K562HSPD1
LINC00958ENSG00000251381.2438.84130615.41100-0.487903.771502.33580K562IGF2BP3
LINC00958ENSG00000251381.2612.050101221.73990-0.9972017.6233014.86740K562KIF1C
LINC00958ENSG00000251381.2956.81030715.094900.420002.224801.39750K562KRR1
LINC00958ENSG00000251381.2451.67440697.53610-0.627005.810803.68910K562LARP7
LINC00958ENSG00000251381.2717.235401169.46890-0.705308.556606.25640K562MAK16
LINC00958ENSG00000251381.2792.76610634.554100.321102.276901.44650K562MATR3
LINC00958ENSG00000251381.2859.688401368.65100-0.670909.767207.85870K562MBNL1
LINC00958ENSG00000251381.2453.53290959.32120-1.0808011.167508.92020K562NAA15
LINC00958ENSG00000251381.2274.65010437.93170-0.673105.505403.78220K562NCBP2
LINC00958ENSG00000251381.2509.58480848.75700-0.736003.271902.16950K562PABPN1
LINC00958ENSG00000251381.2400.12280565.74160-0.499703.386402.30570K562PCBP2
LINC00958ENSG00000251381.2817.521101123.13460-0.458203.401402.47790K562PCBP3
LINC00958ENSG00000251381.2650.38600889.02530-0.450903.203001.51650K562PKM
LINC00958ENSG00000251381.2592.79550861.49160-0.539305.434804.31290K562POLR2G
LINC00958ENSG00000251381.21114.567101502.13330-0.430503.961002.95530K562PPIG
LINC00958ENSG00000251381.2460.14470645.70390-0.488803.516502.47880K562PSIP1
LINC00958ENSG00000251381.2940.11810617.772200.605707.261006.22310K562PTBP1
LINC00958ENSG00000251381.2616.706101141.75200-0.8886011.1781010.13680K562PUS1
LINC00958ENSG00000251381.2577.269401112.38840-0.9463018.1212016.57270K562RBM15
LINC00958ENSG00000251381.2752.63790592.345400.345402.257401.50270K562RBM22
LINC00958ENSG00000251381.2441.463401044.23130-1.242107.231004.40960K562RBM39
LINC00958ENSG00000251381.2438.51580623.35450-0.507403.661802.38300K562NELFE
LINC00958ENSG00000251381.2442.76580716.92880-0.695305.564304.40360K562RPS19
LINC00958ENSG00000251381.21402.31280767.581400.869304.042602.72360K562SAFB
LINC00958ENSG00000251381.21331.63420793.602800.746605.784603.70580K562SDAD1
LINC00958ENSG00000251381.2346.91520776.34280-1.162105.713403.78250K562SF1
LINC00958ENSG00000251381.2604.61960796.48540-0.397602.232801.36890K562SF3B1
LINC00958ENSG00000251381.2289.10450436.55920-0.594604.667703.54630K562SF3B4
LINC00958ENSG00000251381.2467.81390891.37560-0.930104.544902.85040K562SNRNP200
LINC00958ENSG00000251381.2379.17840605.62770-0.675606.372705.31120K562SRSF1
LINC00958ENSG00000251381.21303.34740980.596400.410404.513202.54730K562SRSF9
LINC00958ENSG00000251381.21067.391001588.12340-0.573205.569003.70970K562STAU1
LINC00958ENSG00000251381.21366.62480864.086000.6613010.213708.63170K562SYNCRIP
LINC00958ENSG00000251381.21210.239001548.23180-0.355302.805201.41290K562TRIP6
LINC00958ENSG00000251381.2282.33050407.01110-0.527702.724301.64070K562U2AF1
LINC00958ENSG00000251381.21235.821401051.539800.232902.069701.44190K562UPF1
LINC00958ENSG00000251381.2623.821301157.52360-0.891805.558003.53860K562UTP18
LINC00958ENSG00000251381.2750.355601085.67030-0.532902.896801.66400K562UTP3
LINC00958ENSG00000251381.21066.43750657.157700.698403.549101.69780K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00958 is not available on ENCORE database.





13 RBPs can affect the splicing of LINC00958 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELINC00958ENSG00000251381.2chr11-1300577213005885130021751300245613007586130076910.779000.000020.00083includedK562SRSF1
SELINC00958ENSG00000251381.2chr11-130075861300769113001584130024561301100213011086-0.466000.000000.00000excludedK562SRSF1
SELINC00958ENSG00000251381.2chr11-129866541298676112984056129843101301100213011094-0.280000.000180.00955excludedK562PRPF8
SELINC00958ENSG00000251381.2chr11-1300758613007691130015841300245613011002130110860.336000.000000.00080includedK562WDR3
SELINC00958ENSG00000251381.2chr11-1300758613007691130015841300245613011002130110860.191000.009600.07856includedK562AQR
SELINC00958ENSG00000251381.2chr11-130075861300769113001584130024561301100213011086-0.321000.000010.00057excludedK562FXR1
SELINC00958ENSG00000251381.2chr11-130099481301001313007586130076911301100213011085-0.159000.000120.04916excludedK562UCHL5
SELINC00958ENSG00000251381.2chr11-129866541298676112984056129843101301100213011094-0.325000.000010.00128excludedK562EFTUD2
SELINC00958ENSG00000251381.2chr11-1300758613007691130015841300245613011002130110860.323000.000000.00009includedK562U2AF1
SELINC00958ENSG00000251381.2chr11-130099481301001313007586130076911301100213011085-0.153000.000080.00282excludedK562U2AF1
SELINC00958ENSG00000251381.2chr11-1300758613007691130015841300245613011002130110860.236000.000590.08551includedK562SRSF7
SELINC00958ENSG00000251381.2chr11-1300758613007691130015841300245613011002130110860.285000.000010.00561includedK562UPF1
SELINC00958ENSG00000251381.2chr11-130099481301001313007586130076911301100213011085-0.114000.005500.07825excludedK562U2AF2
SELINC00958ENSG00000251381.2chr11-1300758613007691130015841300245613011002130110860.244000.000000.00049includedK562HNRNPU
SELINC00958ENSG00000251381.2chr11-129866541298676112984056129843101301100213011094-0.268000.000000.00008excludedK562HNRNPU
SELINC00958ENSG00000251381.2chr11-1298665412986761129840561298431013011002130110940.186000.007970.09894includedK562HNRNPC
SELINC00958ENSG00000251381.2chr11-130075861300769113001584130024561301100213011086-0.388000.000000.00000excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC00958 is not avaliable on ENCORE database.