KDSR

General Information

Gene Name       : KDSR
Gene ID             : ENSG00000119537.17
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: KDSR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KDSRENSG00000119537.179.8710.4810.18ENCSR000AEF
HepG2KDSRENSG00000119537.179.2512.1310.69ENCSR985KAT
K562KDSRENSG00000119537.1711.2310.6510.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KDSR is not avaliable on ENCORE database.



Proteins bound to RNA
  • KDSR RNA is bound by 9 proteins.  







eCLIP assay for KDSR is not avaliable on ENCORE database.





9 proteins are bound to KDSR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr186099848260998579-3'-UTR,intron-Distal,intron-Proximal3.840309.12237HepG2PTBP1
chr186099843660998482-3'-UTR,intron-Distal5.4263510.89838HepG2PTBP1
chr186099861660998685-3'-UTR,intron-Distal,intron-Proximal3.590113.11711K562FAM120A
chr186099849360998576-3'-UTR,intron-Distal,intron-Proximal5.1527714.54239K562PTBP1
chr186099843860998493-3'-UTR,intron-Distal5.8908310.44241K562PTBP1
chr186099800260998079-3'-UTR,intron-Distal,intron-Proximal7.4125818.77973K562CPEB4
chr186103430061034354-5'-UTR,CDS,intron-Distal5.028019.60748HepG2DDX3X
chr186103464161034733-5'-UTR,intron-Distal3.958673.72434HepG2NCBP2
chr186103435461034430-5'-UTR,intron-Distal,intron-Proximal3.163017.09702HepG2DDX3X
chr186102272261022801-CDS,intron-Distal,intron-Proximal5.256608.07539HepG2BCLAF1
chr186101811961018312-CDS,intron-Distal,intron-Proximal4.395158.40228HepG2PPIG
chr186100252661002621-CDS,intron-Distal,intron-Proximal3.162934.05586HepG2U2AF2
chr186101011161010180-intron-Distal4.838207.11777HepG2DKC1
chr186100834961008419-intron-Distal4.651574.64001HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KDSR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KDSR is not available on ENCORE database.

  • 66 RBPs can affect the levels of KDSR.  








The Knockdown/knockout RNA-Seq assay for KDSR is not available on ENCORE database.





66 RBPs can affect the gene expression of KDSR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KDSRENSG00000119537.11546.59520385.949100.502003.336002.16550HepG2AATF
KDSRENSG00000119537.11378.51550518.47570-0.453903.810902.92350HepG2AKAP8L
KDSRENSG00000119537.11898.35680750.182900.259902.022501.41840HepG2AUH
KDSRENSG00000119537.11499.33290364.577500.453702.791802.19090HepG2BOP1
KDSRENSG00000119537.11662.81850489.357300.437603.529202.67360HepG2CALR
KDSRENSG00000119537.11530.76040688.96970-0.376402.131001.44680HepG2CIRBP
KDSRENSG00000119537.11567.66530827.19050-0.543202.746801.98480HepG2CNOT7
KDSRENSG00000119537.11623.13290459.027600.440902.945001.80800HepG2CPSF7
KDSRENSG00000119537.11552.75580416.735700.407402.563701.68690HepG2DDX24
KDSRENSG00000119537.11485.60040839.55070-0.789807.611406.62090HepG2DDX3X
KDSRENSG00000119537.11937.04610721.229800.377602.084601.54170HepG2DDX6
KDSRENSG00000119537.11400.85700535.96080-0.419002.850902.14020HepG2DNAJC21
KDSRENSG00000119537.11356.75970531.15200-0.574206.413805.48020HepG2DNAJC2
KDSRENSG00000119537.11309.27130462.95670-0.582003.400002.38660HepG2EEF2
KDSRENSG00000119537.11600.48080392.174700.614503.374602.14290HepG2AGO1
KDSRENSG00000119537.11566.97180766.15690-0.434402.465601.86050HepG2EIF4A3
KDSRENSG00000119537.11599.09390773.07600-0.367802.116201.50790HepG2FXR1
KDSRENSG00000119537.11245.73740334.63270-0.445502.190201.39960HepG2GEMIN5
KDSRENSG00000119537.11620.13070492.677900.331802.713601.74320HepG2HDGF
KDSRENSG00000119537.11236.58950541.09460-1.1935014.0606012.78230HepG2HNRNPA1
KDSRENSG00000119537.11432.11020601.84250-0.478003.211502.47130HepG2HNRNPC
KDSRENSG00000119537.11283.18190597.86530-1.0781018.0765016.62920HepG2HNRNPU
KDSRENSG00000119537.11403.16500610.70390-0.599107.558506.40960HepG2ILF2
KDSRENSG00000119537.11550.51740777.66540-0.498403.122202.45560HepG2MATR3
KDSRENSG00000119537.11391.59330795.97640-1.0234011.3656010.12400HepG2NCBP2
KDSRENSG00000119537.11366.83220533.25250-0.539704.366403.46100HepG2PPIL4
KDSRENSG00000119537.11333.60190430.71050-0.368602.338901.62090HepG2PRPF4
KDSRENSG00000119537.11572.34320695.59110-0.281402.254001.75050HepG2PTBP1
KDSRENSG00000119537.11596.90280740.12310-0.310301.835001.33620HepG2PUF60
KDSRENSG00000119537.11424.12680525.61930-0.309502.201801.63730HepG2PUS1
KDSRENSG00000119537.11609.05510753.44460-0.306902.285001.70740HepG2QKI
KDSRENSG00000119537.111057.36230529.795600.996907.139306.03490HepG2RAVER1
KDSRENSG00000119537.11881.33240683.760800.366102.632801.97250HepG2RBM25
KDSRENSG00000119537.11257.07550440.48460-0.776905.286103.81240HepG2RCC2
KDSRENSG00000119537.11645.15970774.16600-0.263001.973301.49980HepG2NELFE
KDSRENSG00000119537.11248.85820365.68860-0.555303.257102.59720HepG2RPS19
KDSRENSG00000119537.11550.81810830.89890-0.593103.802002.86350HepG2RPS3A
KDSRENSG00000119537.11266.68820510.67000-0.937208.277106.42240HepG2RPS5
KDSRENSG00000119537.11475.81230343.995400.467902.462701.71710HepG2RRP9
KDSRENSG00000119537.11226.60630367.04340-0.695804.318003.15200HepG2SERBP1
KDSRENSG00000119537.11563.66290709.69750-0.332402.860302.14740HepG2SLBP
KDSRENSG00000119537.11401.96110620.94060-0.627407.077606.12230HepG2SMN1
KDSRENSG00000119537.11785.90970398.815800.978507.506706.21150HepG2SNRNP70
KDSRENSG00000119537.111225.93120813.097500.5923010.575009.76620HepG2SRFBP1
KDSRENSG00000119537.11430.76520755.96280-0.811409.691808.92820HepG2SRSF1
KDSRENSG00000119537.11914.64330614.985800.572608.308507.44380HepG2SRSF9
KDSRENSG00000119537.11543.40380705.95850-0.377603.448002.88980HepG2SSB
KDSRENSG00000119537.11878.33250495.081800.827005.919904.17640HepG2SUB1
KDSRENSG00000119537.11822.50760679.391400.275701.851201.37540HepG2TAF15
KDSRENSG00000119537.11306.52580581.03260-0.9226011.5402010.64390HepG2TIAL1
KDSRENSG00000119537.11470.82120586.12490-0.316002.456801.91830HepG2TRIM56
KDSRENSG00000119537.11269.65240410.90310-0.607702.385301.45960HepG2UPF2
KDSRENSG00000119537.11759.48360520.816900.544102.727701.47600HepG2XRCC5
KDSRENSG00000119537.11273.81330441.67020-0.689804.018003.15290HepG2XRN2
KDSRENSG00000119537.11291.47950434.03960-0.574404.000403.21260K562AKAP8L
KDSRENSG00000119537.11425.69340611.13890-0.521703.608202.95550K562AQR
KDSRENSG00000119537.11190.74290324.51060-0.766603.872502.32290K562EEF2
KDSRENSG00000119537.11200.61120313.55360-0.644303.370802.35990K562EFTUD2
KDSRENSG00000119537.11341.87640441.95160-0.370402.383001.70730K562EIF2S2
KDSRENSG00000119537.11215.81210335.74220-0.637603.208702.08950K562EIF3D
KDSRENSG00000119537.11427.68990588.91410-0.461502.959902.17940K562GRSF1
KDSRENSG00000119537.11321.10560472.57680-0.557504.264802.93340K562HNRNPA1
KDSRENSG00000119537.11191.43360320.31670-0.742704.623203.87030K562HNRNPC
KDSRENSG00000119537.11346.18110523.32770-0.596205.467804.19850K562HNRNPU
KDSRENSG00000119537.11219.79710305.12320-0.473201.967401.32840K562PRPF8
KDSRENSG00000119537.11302.44680430.52630-0.509403.119102.54860K562PUS1
KDSRENSG00000119537.11150.21590261.97700-0.802404.693803.39970K562RCC2
KDSRENSG00000119537.11300.84670405.48820-0.430602.615201.78540K562SF3B4
KDSRENSG00000119537.11317.61200440.26290-0.471102.723302.02070K562TARDBP
KDSRENSG00000119537.11206.83180312.68660-0.596303.012101.94210K562UCHL5
KDSRENSG00000119537.11363.06040466.83280-0.362702.564601.87240K562UPF1
KDSRENSG00000119537.11318.37920415.37820-0.383702.666201.83390K562WDR43
KDSRENSG00000119537.11523.83770688.45870-0.394302.746101.88680K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KDSR is not available on ENCORE database.





5 RBPs can affect the splicing of KDSR :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKDSRENSG00000119537.11chr18-610024896100259160994958609991346100603261006116-0.177000.002890.08666excludedK562FXR1
SEKDSRENSG00000119537.11chr18-610116426101172661006032610061166101812061018312-0.064000.003870.05100excludedK562PUS1
A3SSKDSRENSG00000119537.11chr18-6101812061018355610181206101831261022436610226300.066000.005090.02934longerK562AQR
A3SSKDSRENSG00000119537.11chr18-6102243661022630610224366102253261022730610227960.089000.000030.00027longerK562AQR
MXEKDSRENSG00000119537.11chr18-61011642610117266101812061018355610060326100611661022436610225320.067000.002630.020931includedK562AQR
MXEKDSRENSG00000119537.11chr18-6100603261006116610116426101172661002489610025916101812061018312-0.179000.003490.022672includedHepG2U2AF2
MXEKDSRENSG00000119537.11chr18-6101164261011726610181206101831261006032610061166102243661022532-0.237000.000730.019722includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KDSR is not avaliable on ENCORE database.