FN3KRP

General Information

Gene Name       : FN3KRP
Gene ID             : ENSG00000141560.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FN3KRP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FN3KRPENSG00000141560.1417.1419.8718.51ENCSR000AEF
HepG2FN3KRPENSG00000141560.1453.2544.4648.86ENCSR985KAT
K562FN3KRPENSG00000141560.1425.0920.8822.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FN3KRP is not avaliable on ENCORE database.



Proteins bound to RNA
  • FN3KRP RNA is bound by 25 proteins.  







eCLIP assay for FN3KRP is not avaliable on ENCORE database.





25 proteins are bound to FN3KRP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr178068531580685411+3'-UTR,intron-Distal3.489553.44343HepG2AKAP1
chr178068068480680764+3'-UTR,CDS,intron-Proximal3.801366.27819HepG2PPIG
chr178068556380685726+3'-UTR,intron-Distal4.683669.89033K562UPF1
chr178068534480685403+3'-UTR,intron-Distal4.367883.71802K562RBFOX2
chr178068788780687984+3'-UTR3.496765.11891HepG2GRWD1
chr178068499080685047+3'-UTR,CDS,intron-Proximal3.083533.80299HepG2GRWD1
chr178068557980685637+3'-UTR,intron-Distal6.9887433.29983HepG2RBFOX2
chr178068545580685504+3'-UTR,intron-Distal3.286453.06830K562UPF1
chr178068531380685416+3'-UTR,intron-Distal3.705199.43144K562UPF1
chr178068474780684804+3'-UTR,CDS,intron-Distal4.691184.38106HepG2PPIG
chr178068530880685502+3'-UTR,intron-Distal4.5954115.89726HepG2UPF1
chr178068535080685468+3'-UTR,intron-Distal4.155833.31384K562XRN2
chr178068557780685652+3'-UTR,intron-Distal4.6239812.77583K562RBFOX2
chr178067627380676326+5'-UTR,CDS,intron-Distal,intron-Proximal3.144343.25653K562CSTF2T
chr178067876180678885+5'-UTR,intron-Distal,intron-Proximal4.372174.78128K562HNRNPM
chr178067679680676912+5'-UTR,CDS,intron-Distal3.424567.44807HepG2GRWD1
chr178067675280676830+5'-UTR,CDS,intron-Distal,intron-Proximal3.904397.81467HepG2U2AF2
chr178067687880676918+5'-UTR,CDS,intron-Distal3.859954.41267HepG2PPIG
chr178067465780674771+5'-UTR,CDS3.277573.46047K562GRWD1
chr178067621380676330+5'-UTR,CDS,intron-Distal,intron-Proximal3.377093.64784K562EWSR1
chr178067470080674774+5'-UTR,CDS,intron-Proximal3.138486.69553HepG2PPIG
chr178067476180674867+5'-UTR,CDS,intron-Proximal3.717267.29769HepG2PRPF8
chr178067582080675879+intron-Distal3.579005.02933K562CSTF2T
chr178067612780676182+intron-Distal3.793006.12177K562EIF4G2
chr178067581780675886+intron-Distal4.849567.60148HepG2DKC1
chr178067580180675869+intron-Distal3.784493.07834HepG2STAU2
chr178068757580687710+intron-Distal,intron-Proximal3.425383.84715HepG2HNRNPK
chr178068144580681563+intron-Distal4.813616.23114K562TARDBP
chr178067600580676117+intron-Distal3.747715.63970K562TARDBP
chr178067618280676273+intron-Distal,intron-Proximal5.087128.44255K562EIF4G2
chr178067577780675870+intron-Distal4.015486.46034K562SND1
chr178067598980676127+intron-Distal3.952199.54710K562SND1
chr178067621480676297+intron-Distal,intron-Proximal3.612813.01619K562FUS
chr178067607380676127+intron-Distal5.1482513.86598K562EIF4G2
chr178067579380675873+intron-Distal5.137308.61801HepG2KHSRP
chr178067574680675877+intron-Distal3.560136.94616K562TARDBP
chr178067604980676176+intron-Distal5.302557.82495HepG2KHSRP
chr178067604480676156+intron-Distal3.373458.66541HepG2DKC1
chr178068139980681445+intron-Distal4.413265.30489K562TARDBP
chr178067581180675882+intron-Distal4.8898913.42605K562EIF4G2
chr178067620280676273+intron-Distal,intron-Proximal3.683345.12112K562CSTF2T
chr178067607980676128+intron-Distal4.159503.80512K562CSTF2T
chr178067481780674993+intron-Distal,intron-Proximal5.6341222.37727HepG2EFTUD2
chr178067581380675866+intron-Distal4.072274.99339K562AATF
chr178068156380681666+intron-Distal3.586754.17049K562TARDBP
chr178067607180676182+intron-Distal4.437815.22498HepG2TIAL1
chr178068711980687180+intron-Proximal4.078503.05889HepG2SF3B4
chr178067479380674867+intron-Proximal5.248755.17878K562DROSHA
chr178067480880674864+intron-Proximal4.136209.11787HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FN3KRP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FN3KRP is not available on ENCORE database.

  • 62 RBPs can affect the levels of FN3KRP.  








The Knockdown/knockout RNA-Seq assay for FN3KRP is not available on ENCORE database.





62 RBPs can affect the gene expression of FN3KRP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FN3KRPENSG00000141560.10718.36600879.71880-0.292302.775202.16680HepG2ACO1
FN3KRPENSG00000141560.10780.508701076.30460-0.463602.938002.39180HepG2AKAP1
FN3KRPENSG00000141560.10521.16200883.81950-0.7620013.0086011.50790HepG2AKAP8L
FN3KRPENSG00000141560.10599.99090890.54350-0.569704.591503.59240HepG2ASCC1
FN3KRPENSG00000141560.10872.818401103.44770-0.338303.768802.98970HepG2AUH
FN3KRPENSG00000141560.10473.92440660.77400-0.479503.210302.24070HepG2BCLAF1
FN3KRPENSG00000141560.10577.50050840.04370-0.540605.378504.34790HepG2CALR
FN3KRPENSG00000141560.10627.15110879.48860-0.487906.808305.84810HepG2CKAP4
FN3KRPENSG00000141560.10591.21790764.39400-0.370602.717001.62170HepG2CPSF7
FN3KRPENSG00000141560.101048.974601295.90380-0.305003.550702.72900HepG2DAZAP1
FN3KRPENSG00000141560.10554.07020763.36850-0.462303.663802.89200HepG2DDX21
FN3KRPENSG00000141560.10809.145601031.00070-0.349602.104601.55130HepG2DDX3X
FN3KRPENSG00000141560.10557.81680747.77120-0.422802.548501.80190HepG2DDX55
FN3KRPENSG00000141560.10446.49140885.69260-0.9882010.172009.06890HepG2DDX6
FN3KRPENSG00000141560.10529.92100691.87590-0.384704.020503.26390HepG2DNAJC2
FN3KRPENSG00000141560.10467.35740702.76890-0.588503.821202.50840HepG2AGO1
FN3KRPENSG00000141560.10423.85410851.39640-1.0063011.6695010.50390HepG2EIF2S1
FN3KRPENSG00000141560.10372.32870606.49220-0.703905.292104.07010HepG2EIF3D
FN3KRPENSG00000141560.10423.86840916.11020-1.1119010.624409.31810HepG2EIF4B
FN3KRPENSG00000141560.10996.678901278.66020-0.359403.825702.87050HepG2EIF4G1
FN3KRPENSG00000141560.10776.697401224.84380-0.657207.083305.80330HepG2EIF4G2
FN3KRPENSG00000141560.10573.49270937.41930-0.708905.683804.61930HepG2FIP1L1
FN3KRPENSG00000141560.10497.76180661.51270-0.410302.954402.14410HepG2FUBP3
FN3KRPENSG00000141560.10349.27120540.00360-0.628604.554503.39620HepG2GEMIN5
FN3KRPENSG00000141560.10685.327301191.06880-0.7974015.4203013.57730HepG2HNRNPA2B1
FN3KRPENSG00000141560.10996.716801180.40870-0.244002.311101.68700HepG2HNRNPL
FN3KRPENSG00000141560.10577.06180778.65400-0.432304.742403.96590HepG2HNRNPU
FN3KRPENSG00000141560.10667.77250900.37980-0.431202.281101.38340HepG2KHSRP
FN3KRPENSG00000141560.10665.28950804.14900-0.273502.503901.53210HepG2KIF1C
FN3KRPENSG00000141560.10887.342101285.02620-0.534206.839305.64690HepG2NOL12
FN3KRPENSG00000141560.10275.66870421.05370-0.611102.602001.74780HepG2PABPC1
FN3KRPENSG00000141560.10662.68500870.47900-0.393502.437001.75560HepG2PABPC4
FN3KRPENSG00000141560.10571.19930770.71240-0.432203.521102.57670HepG2PARN
FN3KRPENSG00000141560.10707.56260909.64190-0.362403.691903.01220HepG2PCBP1
FN3KRPENSG00000141560.10349.53860576.69660-0.722405.822104.69910HepG2PRPF8
FN3KRPENSG00000141560.10889.396801302.28750-0.5501010.625009.62340HepG2PUM1
FN3KRPENSG00000141560.101040.660201301.29610-0.322502.643301.98740HepG2PUM2
FN3KRPENSG00000141560.10769.230501002.42740-0.382003.487202.79640HepG2QKI
FN3KRPENSG00000141560.10744.68010909.77840-0.288901.920301.34930HepG2RBM25
FN3KRPENSG00000141560.10370.03590570.45780-0.624504.233203.28300HepG2RRP9
FN3KRPENSG00000141560.10316.14420814.89080-1.3660021.5556019.79350HepG2SF3B1
FN3KRPENSG00000141560.10604.54870963.65310-0.6727010.314109.28070HepG2SF3B4
FN3KRPENSG00000141560.10710.111901196.00260-0.7521015.9095014.96820HepG2SRFBP1
FN3KRPENSG00000141560.10695.79380908.61090-0.385003.811103.01360HepG2SRSF7
FN3KRPENSG00000141560.10552.86950818.32560-0.565707.633006.79940HepG2SRSF9
FN3KRPENSG00000141560.101227.663201038.383900.241502.269201.79440HepG2SSB
FN3KRPENSG00000141560.10446.33740722.30070-0.694503.962402.51020HepG2SUB1
FN3KRPENSG00000141560.10635.96170830.74260-0.385503.145802.25900HepG2TIA1
FN3KRPENSG00000141560.10530.92580801.81940-0.594805.058304.22270HepG2U2AF1
FN3KRPENSG00000141560.10598.90250954.51430-0.6724011.4061010.16440HepG2UPF1
FN3KRPENSG00000141560.10743.08610981.10540-0.400904.339803.06300HepG2UTP18
FN3KRPENSG00000141560.10682.07290921.54570-0.434104.816604.06240HepG2UTP3
FN3KRPENSG00000141560.10414.26670760.11010-0.875606.502604.58350HepG2XRCC5
FN3KRPENSG00000141560.10572.00210850.02570-0.571503.446902.26510HepG2XRCC6
FN3KRPENSG00000141560.101128.99440717.300600.6543012.6068011.34430HepG2ZC3H8
FN3KRPENSG00000141560.10751.890801049.78270-0.481507.789706.99310HepG2ZNF622
FN3KRPENSG00000141560.10931.21970788.571200.239801.776001.30110K562AGGF1
FN3KRPENSG00000141560.10834.662801033.63350-0.308502.614401.40920K562APOBEC3C
FN3KRPENSG00000141560.10416.77160560.93360-0.428602.570001.69370K562EFTUD2
FN3KRPENSG00000141560.10818.16590549.423100.574402.178801.35630K562HNRNPM
FN3KRPENSG00000141560.10636.49980870.97830-0.452504.716703.54340K562HNRNPU
FN3KRPENSG00000141560.101035.95470813.830700.348102.225601.72790K562PUS1
FN3KRPENSG00000141560.10952.65190792.882200.264701.866101.36180K562RBM15
FN3KRPENSG00000141560.10780.68940558.070300.484202.612001.32430K562RRP9
FN3KRPENSG00000141560.10304.64760467.78470-0.618703.489802.39450K562SF3B1
FN3KRPENSG00000141560.10647.271501128.33620-0.8018011.234509.36140K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FN3KRP is not available on ENCORE database.





5 RBPs can affect the splicing of FN3KRP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFN3KRPENSG00000141560.10chr17+806767818067693380674635806747728068067980680762-0.149000.000260.01088excludedK562AKAP8L
SEFN3KRPENSG00000141560.10chr17+806767818067693380674635806747728068067980680762-0.166000.000270.00572excludedK562PUS1
SEFN3KRPENSG00000141560.10chr17+8068090080680987806804848068076280684355806844780.268000.000010.00026includedK562U2AF1
SEFN3KRPENSG00000141560.10chr17+806767818067693380674635806747728068067980680762-0.157000.003580.09835excludedK562HNRNPU
SEFN3KRPENSG00000141560.10chr17+806781478067823980676892806769338068067980680762-0.198000.000110.00289excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FN3KRP is not avaliable on ENCORE database.