FCF1

General Information

Gene Name       : FCF1
Gene ID             : ENSG00000119616.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FCF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FCF1ENSG00000119616.1185.9860.3973.19ENCSR000AEF
HepG2FCF1ENSG00000119616.1143.4566.1454.80ENCSR985KAT
K562FCF1ENSG00000119616.1171.0161.7866.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FCF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FCF1 RNA is bound by 3 proteins.  







eCLIP assay for FCF1 is not avaliable on ENCORE database.





3 proteins are bound to FCF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr147520281575202866+3'-UTR3.4052217.48317K562UPF1
chr147520228275202353+3'-UTR5.0655629.51292HepG2UPF1
chr147520246375202493+3'-UTR6.6009623.17501K562UPF1
chr147520228375202345+3'-UTR3.0943811.03628K562AKAP1
chr147520244475202463+3'-UTR5.4634219.02308K562UPF1
chr147520246275202496+3'-UTR4.544659.00613K562AKAP1
chr147520250075202558+3'-UTR3.335843.79014HepG2AKAP1
chr147520228375202365+3'-UTR4.6576641.02491K562UPF1
chr147520305975203083+3'-UTR3.721773.47114HepG2UPF1
chr147520303375203059+3'-UTR5.052454.78313HepG2UPF1
chr147520241475202434+3'-UTR4.045376.74636K562UPF1
chr147520261975202657+3'-UTR3.100465.99038K562UPF1
chr147520247175202571+3'-UTR4.812967.87924HepG2STAU2
chr147520289175202923+3'-UTR4.460419.43510K562UPF1
chr147520239475202406+3'-UTR5.584516.86827K562AKAP1
chr147520249775202564+3'-UTR5.1622328.48565HepG2UPF1
chr147520278475202800+3'-UTR4.973186.81621K562UPF1
chr147520282275202854+3'-UTR3.757615.70839K562AKAP1
chr147520318875203222+3'-UTR5.357627.60978K562UPF1
chr147520281475202869+3'-UTR5.2504215.68171HepG2UPF1
chr147520244075202462+3'-UTR5.3226412.83885K562AKAP1
chr147520249575202601+3'-UTR6.6490148.23798K562UPF1
chr147520272875202767+3'-UTR3.7640710.02205K562UPF1
chr147520240675202440+3'-UTR6.5008215.11236K562AKAP1
chr147520293875202978+3'-UTR5.375825.93974HepG2UPF1
chr147520249675202565+3'-UTR3.9418723.67101K562AKAP1
chr147520314375203164+3'-UTR5.136678.00788K562UPF1
chr147520241675202487+3'-UTR4.761345.71320HepG2AKAP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FCF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FCF1 is not available on ENCORE database.

  • 83 RBPs can affect the levels of FCF1.  








The Knockdown/knockout RNA-Seq assay for FCF1 is not available on ENCORE database.





83 RBPs can affect the gene expression of FCF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FCF1ENSG00000119616.7701.723501021.22150-0.541302.850902.05540HepG2ASCC1
FCF1ENSG00000119616.7933.871801264.97440-0.437806.013905.06420HepG2AUH
FCF1ENSG00000119616.7450.25680687.36580-0.610304.057302.98870HepG2BCLAF1
FCF1ENSG00000119616.7587.89260821.55380-0.482803.804203.11410HepG2BOP1
FCF1ENSG00000119616.7447.95120775.55140-0.7919014.2736013.00900HepG2CKAP4
FCF1ENSG00000119616.7377.49400754.24370-0.9986011.8791010.56690HepG2CPSF6
FCF1ENSG00000119616.7269.46530488.67480-0.858807.341305.71200HepG2CSTF2
FCF1ENSG00000119616.7941.828501141.48850-0.277403.116402.33690HepG2DAZAP1
FCF1ENSG00000119616.7535.38140741.36730-0.469604.369702.93600HepG2DDX1
FCF1ENSG00000119616.7541.88140742.10060-0.453604.544403.71410HepG2DKC1
FCF1ENSG00000119616.7474.52830726.96920-0.615407.385506.28070HepG2DNAJC21
FCF1ENSG00000119616.7549.64060720.47240-0.390504.194403.42300HepG2DNAJC2
FCF1ENSG00000119616.7515.20580976.39350-0.922305.990205.13530HepG2EIF2S1
FCF1ENSG00000119616.7939.973101126.16010-0.260702.325301.54610HepG2EIF4G1
FCF1ENSG00000119616.7726.827301078.78720-0.569705.554004.42320HepG2EIF4G2
FCF1ENSG00000119616.71018.661501452.33730-0.511707.605506.69210HepG2ETF1
FCF1ENSG00000119616.7723.499401009.88710-0.481102.421701.79740HepG2G3BP1
FCF1ENSG00000119616.7318.30960450.57260-0.501302.712301.82360HepG2GEMIN5
FCF1ENSG00000119616.7576.81880855.02830-0.567904.145803.37420HepG2GPKOW
FCF1ENSG00000119616.7506.80120733.93290-0.534204.409803.61910HepG2HNRNPA1
FCF1ENSG00000119616.7533.65210816.33900-0.613305.682504.71620HepG2HNRNPC
FCF1ENSG00000119616.7616.17770745.46780-0.274802.167001.52670HepG2HNRNPF
FCF1ENSG00000119616.7600.51320810.94370-0.433404.985604.19160HepG2HNRNPU
FCF1ENSG00000119616.7670.564701026.60460-0.614403.245402.52070HepG2IGF2BP2
FCF1ENSG00000119616.7568.61680828.35660-0.542808.146106.95650HepG2ILF2
FCF1ENSG00000119616.7437.76340634.36740-0.535202.621601.47000HepG2KHDRBS1
FCF1ENSG00000119616.7619.921901032.44590-0.735903.417902.28770HepG2KHSRP
FCF1ENSG00000119616.7828.43760661.783100.323902.412701.65490HepG2MSI2
FCF1ENSG00000119616.7841.512901120.80840-0.413501.954301.41700HepG2NCBP2
FCF1ENSG00000119616.7575.02080998.40100-0.796004.072603.20830HepG2PABPC4
FCF1ENSG00000119616.7667.07090802.72760-0.267102.102701.35650HepG2PARN
FCF1ENSG00000119616.7894.275801069.53390-0.258202.228701.67310HepG2PCBP1
FCF1ENSG00000119616.7520.53750779.23000-0.582004.097502.06380HepG2PHF6
FCF1ENSG00000119616.7504.90420723.30150-0.518605.535704.52430HepG2PPIL4
FCF1ENSG00000119616.7709.002301088.34690-0.618309.100508.22390HepG2PTBP1
FCF1ENSG00000119616.7549.215001080.49980-0.9763015.7003014.43420HepG2PUF60
FCF1ENSG00000119616.7875.635401147.00250-0.389505.507904.73080HepG2PUM1
FCF1ENSG00000119616.7523.25110790.05460-0.594408.489507.51140HepG2PUS1
FCF1ENSG00000119616.7597.717201178.58680-0.9795019.0682017.63250HepG2QKI
FCF1ENSG00000119616.7822.276301069.68860-0.379503.104502.39440HepG2RBM25
FCF1ENSG00000119616.7906.467001128.13320-0.315603.077202.43180HepG2RECQL
FCF1ENSG00000119616.7492.12530722.19640-0.553407.019606.06030HepG2SAFB2
FCF1ENSG00000119616.7572.38000807.66510-0.496803.902403.07650HepG2SF3B1
FCF1ENSG00000119616.7806.148701133.00890-0.491006.484105.64110HepG2SF3B4
FCF1ENSG00000119616.7766.616701036.03970-0.434505.979905.01080HepG2SLBP
FCF1ENSG00000119616.7671.80180842.22860-0.326203.445002.73990HepG2SMN1
FCF1ENSG00000119616.7653.39250888.69980-0.443702.437601.54170HepG2SMNDC1
FCF1ENSG00000119616.7859.596401066.84130-0.311603.056202.40180HepG2SRSF5
FCF1ENSG00000119616.7576.55830732.40350-0.345203.120602.38760HepG2SRSF7
FCF1ENSG00000119616.7768.62270962.18990-0.324003.193502.60960HepG2SRSF9
FCF1ENSG00000119616.7827.128101190.41250-0.525308.464307.66320HepG2SSB
FCF1ENSG00000119616.7492.33210795.22340-0.691706.682705.62260HepG2TARDBP
FCF1ENSG00000119616.7798.76540976.75280-0.290202.062501.33790HepG2TIA1
FCF1ENSG00000119616.7462.45130788.07980-0.7690010.424709.56190HepG2TIAL1
FCF1ENSG00000119616.7519.59900795.02110-0.613606.325005.53490HepG2TRIM56
FCF1ENSG00000119616.7860.446601055.60960-0.294902.092101.34180HepG2TUFM
FCF1ENSG00000119616.7920.22870699.384500.395802.875002.23550HepG2U2AF1
FCF1ENSG00000119616.7721.473001117.35070-0.631105.025003.87490HepG2UBE2L3
FCF1ENSG00000119616.7342.88900457.38410-0.415701.980801.33830HepG2UCHL5
FCF1ENSG00000119616.7323.95060637.79730-0.9773016.4313015.00830HepG2UPF1
FCF1ENSG00000119616.7864.17710615.766000.488805.838705.02240HepG2UTP3
FCF1ENSG00000119616.7378.14340701.45290-0.8914016.4857015.42980HepG2ZNF622
FCF1ENSG00000119616.7760.97630943.43700-0.310102.851601.87690K562BCLAF1
FCF1ENSG00000119616.7265.19900382.56380-0.528603.231502.07330K562CCAR1
FCF1ENSG00000119616.7985.845601301.43650-0.400704.491403.05840K562CPEB4
FCF1ENSG00000119616.7346.26530715.73730-1.0476015.1845012.47290K562CSTF2
FCF1ENSG00000119616.7715.43740883.62970-0.304602.614701.44000K562DDX21
FCF1ENSG00000119616.7498.16780652.40950-0.389102.777001.73420K562DDX3X
FCF1ENSG00000119616.7939.106201195.68060-0.348503.674902.86660K562EIF2S2
FCF1ENSG00000119616.71018.77550708.834100.523206.746505.86120K562FXR1
FCF1ENSG00000119616.71160.84490854.716200.441602.633601.94800K562G3BP2
FCF1ENSG00000119616.71252.855601593.41370-0.346902.965102.18350K562GRSF1
FCF1ENSG00000119616.7287.85640604.56150-1.0705012.8356010.36800K562HNRNPF
FCF1ENSG00000119616.71543.330001113.802700.470504.033002.50250K562HNRNPK
FCF1ENSG00000119616.7947.994701140.31870-0.266502.241501.43720K562HNRNPU
FCF1ENSG00000119616.7780.614801114.95600-0.514303.698802.44660K562IGF2BP2
FCF1ENSG00000119616.7265.60350386.28680-0.540403.162701.56800K562KHDRBS1
FCF1ENSG00000119616.7796.09730951.95140-0.257902.033001.33480K562MTPAP
FCF1ENSG00000119616.7860.745101057.73430-0.297303.512902.68210K562NSUN2
FCF1ENSG00000119616.7459.83740660.97490-0.523504.062002.27780K562PHF6
FCF1ENSG00000119616.71081.06920821.849200.395402.574601.85050K562PRPF8
FCF1ENSG00000119616.7464.53090607.03050-0.386002.338201.51270K562PSIP1
FCF1ENSG00000119616.7856.224801096.73120-0.357102.612202.08100K562PUS1
FCF1ENSG00000119616.7695.48660956.68180-0.460004.798202.35460K562QKI
FCF1ENSG00000119616.7898.583501068.50150-0.249901.959201.44520K562RBM15
FCF1ENSG00000119616.71093.98360837.338200.385602.073401.37050K562RPS19
FCF1ENSG00000119616.7806.942501043.66800-0.371104.051203.07400K562SF3A3
FCF1ENSG00000119616.7390.79030524.97640-0.425902.421201.47840K562SRFBP1
FCF1ENSG00000119616.7769.275901054.12200-0.454503.965702.66940K562SRSF5
FCF1ENSG00000119616.71050.58620714.423000.556202.540701.75610K562SYNCRIP
FCF1ENSG00000119616.7706.651301129.72100-0.676907.517806.28710K562TARDBP
FCF1ENSG00000119616.7858.153901089.73150-0.344702.891502.05270K562TIA1
FCF1ENSG00000119616.7579.086601121.53560-0.9536023.0773021.24600K562UPF1
FCF1ENSG00000119616.7701.01170959.66660-0.453104.296403.19570K562WDR3
FCF1ENSG00000119616.7718.78860997.91460-0.473306.863705.58420K562WDR43
FCF1ENSG00000119616.71386.478601785.11900-0.364603.326202.36870K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FCF1 is not available on ENCORE database.





12 RBPs can affect the splicing of FCF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFCF1ENSG00000119616.7chr14+751815747518164675180187751802557518265375182802-0.107000.000060.00210excludedK562SF3B4
SEFCF1ENSG00000119616.7chr14+751815747518164675180187751802557518265375182802-0.145000.000510.00802excludedHepG2U2AF2
SEFCF1ENSG00000119616.7chr14+751815747518164675180187751802557518265375182802-0.144000.000170.09110excludedK562LARP7
SEFCF1ENSG00000119616.7chr14+751815747518164675180187751802557518265375182802-0.068000.003520.07027excludedK562RBM15
SEFCF1ENSG00000119616.7chr14+751815747518164675180187751802557518265375182802-0.091000.000270.00987excludedK562AGGF1
A3SSFCF1ENSG00000119616.7chr14+7518252375182802751826537518280275181574751816460.081000.000550.04400longerHepG2SF3A3
A3SSFCF1ENSG00000119616.7chr14+7518252375182802751826537518280275181574751816460.103000.000100.01556longerK562EFTUD2
A3SSFCF1ENSG00000119616.7chr14+7518252375182802751826537518280275181574751816460.104000.000000.00000longerK562AQR
A3SSFCF1ENSG00000119616.7chr14+751825237518280275182653751828027518157475181646-0.057000.000370.05057shorterHepG2PCBP1
A5SSFCF1ENSG00000119616.7chr14+7517987275180093751798727517996275180187751802550.076000.002520.04118longerK562AQR
A5SSFCF1ENSG00000119616.7chr14+7518011875180323751801187518025575181574751816460.080000.000060.00173longerK562AQR
A5SSFCF1ENSG00000119616.7chr14+751798727517996275179872751799037518018775180255-0.209000.000130.04339shorterK562HNRNPK
MXEFCF1ENSG00000119616.7chr14+75182523751826077518265375182802751815747518164675189974751900470.052000.000010.000101includedK562AQR
MXEFCF1ENSG00000119616.7chr14+75182523751826077518269675182802751815747518164675189974751900470.063000.000040.000541includedK562AQR
MXEFCF1ENSG00000119616.7chr14+7518018775180255751815747518164675179906751799627518252375182802-0.156000.003650.071342includedK562TARDBP
MXEFCF1ENSG00000119616.7chr14+75181574751816467518265375182802751801877518025575189974751900470.135000.002470.045471includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FCF1 is not avaliable on ENCORE database.