CTC-435M10.3

General Information

Gene Name : CTC-435M10.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTC-435M10.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTC-435M10.3 is not avaliable on ENCORE database.

Proteins bound to RNA

CTC-435M10.3 RNA is bound by 31 proteins.

eCLIP assay for CTC-435M10.3 is not avaliable on ENCORE database.

31 proteins are bound to CTC-435M10.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	41930625	41930680	+	3'-UTR	3.74572	5.21096	K562	DDX55
chr19	41930619	41930668	+	3'-UTR,CDS	4.64908	7.71026	K562	PABPC4
chr19	41930747	41930830	+	3'-UTR	4.14497	3.64119	HepG2	UPF1
chr19	41930676	41930743	+	3'-UTR	3.22851	3.55700	HepG2	LARP4
chr19	41930758	41930853	+	3'-UTR	3.62270	3.08588	HepG2	IGF2BP3
chr19	41930810	41930872	+	3'-UTR	5.19324	8.52455	K562	PABPC4
chr19	41882720	41882847	+	5'-UTR,intron-Distal,intron-Proximal	4.06676	3.80037	K562	FUS
chr19	41884166	41884246	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.84701	6.53595	K562	U2AF2
chr19	41916628	41916658	+	CDS	3.43697	7.18470	K562	YBX3
chr19	41916709	41916723	+	CDS,intron-Proximal	3.15063	3.06971	K562	YBX3
chr19	41916866	41916914	+	CDS,intron-Distal	3.93439	8.08045	K562	YBX3
chr19	41916828	41916851	+	CDS,intron-Distal	3.82459	3.66655	K562	YBX3
chr19	41928204	41928249	+	CDS	3.82459	7.40140	K562	YBX3
chr19	41916658	41916676	+	CDS	3.16487	6.98725	K562	YBX3
chr19	41875801	41875887	+	intron-Distal	3.42690	4.92145	K562	HNRNPL
chr19	41877319	41877380	+	intron-Distal	4.97358	15.10611	K562	PTBP1
chr19	41871110	41871121	+	intron-Distal	3.78060	3.31709	K562	ILF3
chr19	41883432	41883568	+	intron-Distal	5.36588	8.00387	K562	GTF2F1
chr19	41883459	41883515	+	intron-Distal	3.55740	6.51841	K562	AATF
chr19	41859986	41860031	+	intron-Distal	4.38788	4.68055	HepG2	CSTF2T
chr19	41883372	41883412	+	intron-Distal	3.62068	4.00200	K562	EIF4G2
chr19	41881607	41881659	+	intron-Distal	3.13016	3.15376	K562	ILF3
chr19	41859546	41859602	+	intron-Distal	4.35533	5.16036	HepG2	CSTF2T
chr19	41882367	41882413	+	5'-UTR,intron-Distal	3.07956	3.14365	K562	NONO
chr19	41920122	41920213	+	intron-Distal,intron-Proximal	3.88443	3.02181	K562	PRPF8
chr19	41882985	41883093	+	intron-Distal,intron-Proximal	4.97757	4.42197	K562	EWSR1
chr19	41859097	41859137	+	intron-Distal	3.13538	3.46580	HepG2	CSTF2T
chr19	41883024	41883099	+	intron-Distal,intron-Proximal	5.30196	14.35031	K562	EIF4G2
chr19	41882391	41882531	+	5'-UTR,intron-Distal	3.40434	5.03073	K562	FUS
chr19	41883032	41883083	+	intron-Distal,intron-Proximal	4.34163	3.19125	K562	GTF2F1
chr19	41875257	41875338	+	intron-Distal	3.59399	10.05167	K562	ILF3
chr19	41858936	41858987	+	intron-Distal	4.37809	4.43799	HepG2	CSTF2T
chr19	41877268	41877316	+	intron-Distal	4.15205	3.09122	HepG2	PTBP1
chr19	41860430	41860485	+	intron-Distal	3.24783	3.69530	HepG2	CSTF2T
chr19	41873232	41873281	+	intron-Distal	3.53268	5.85087	K562	ILF3
chr19	41880195	41880267	+	intron-Distal	3.17389	6.43102	K562	ILF3
chr19	41872255	41872325	+	intron-Distal	3.54073	3.32762	HepG2	DDX59
chr19	41871121	41871154	+	intron-Distal	4.20105	4.33299	K562	ILF3
chr19	41878549	41878593	+	intron-Distal	3.30151	5.85087	K562	ILF3
chr19	41882973	41883018	+	intron-Distal,intron-Proximal	5.10169	6.58769	K562	EIF4G2
chr19	41870095	41870151	+	intron-Distal,intron-Proximal	4.09973	12.08721	K562	NONO
chr19	41883023	41883122	+	intron-Distal,intron-Proximal	4.54861	4.14162	K562	RBFOX2
chr19	41882806	41882845	+	intron-Distal,intron-Proximal	3.15622	3.87725	K562	EIF4G2
chr19	41859399	41859501	+	intron-Distal	3.96375	6.61028	HepG2	CSTF2T
chr19	41903750	41903812	+	CDS,intron-Distal,intron-Proximal	5.31151	5.70239	K562	DROSHA
chr19	41875264	41875351	+	intron-Distal	3.93167	7.69727	HepG2	ILF3
chr19	41883447	41883508	+	intron-Distal	4.75917	6.41528	K562	EWSR1
chr19	41882268	41882300	+	5'-UTR,intron-Distal	3.23087	3.84340	K562	CSTF2T
chr19	41870151	41870258	+	intron-Distal	3.42460	11.89446	K562	NONO
chr19	41877780	41877846	+	intron-Distal	3.65976	11.41640	K562	ILF3
chr19	41883519	41883563	+	intron-Distal	3.49871	3.49390	K562	DROSHA
chr19	41905693	41905746	+	intron-Distal	4.42828	3.91475	K562	PTBP1
chr19	41869894	41870003	+	5'-UTR,intron-Distal,intron-Proximal	4.29678	17.08362	K562	NONO
chr19	41873482	41873516	+	intron-Distal	4.49708	5.59077	K562	ILF3
chr19	41878017	41878063	+	intron-Distal	3.65331	5.59712	K562	ILF3
chr19	41883131	41883223	+	5'-UTR,intron-Distal	3.95836	5.39069	K562	TARDBP
chr19	41870006	41870095	+	intron-Distal,intron-Proximal	4.22244	15.03796	K562	NONO
chr19	41883140	41883176	+	5'-UTR,intron-Distal	4.25554	4.75311	K562	CSTF2T
chr19	41882945	41883017	+	5'-UTR,intron-Distal,intron-Proximal	4.79769	6.49093	K562	TARDBP
chr19	41883509	41883589	+	intron-Distal	5.80365	12.33690	K562	CSTF2T
chr19	41874092	41874148	+	intron-Distal	3.02596	6.19994	K562	ILF3
chr19	41889542	41889650	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.98670	8.25772	K562	LSM11
chr19	41870296	41870367	+	intron-Distal	3.95717	7.34646	K562	NONO
chr19	41877637	41877672	+	intron-Distal	3.24582	4.07710	K562	ILF3
chr19	41877944	41877992	+	intron-Distal	4.04559	3.48745	HepG2	ILF3
chr19	41878266	41878312	+	intron-Distal	3.98439	7.56402	K562	ILF3
chr19	41871157	41871204	+	intron-Distal	4.12754	3.81649	K562	ILF3
chr19	41883039	41883089	+	intron-Distal,intron-Proximal	4.58527	6.55144	K562	AATF
chr19	41879390	41879456	+	intron-Distal	3.15361	7.41257	K562	ILF3
chr19	41869929	41869980	+	5'-UTR,intron-Distal	3.26763	3.77784	K562	RBM15
chr19	41874005	41874092	+	intron-Distal	4.36608	13.09338	K562	ILF3
chr19	41883017	41883099	+	intron-Distal,intron-Proximal	4.35351	3.34609	K562	TARDBP
chr19	41883450	41883574	+	intron-Distal	4.81383	8.54946	K562	FUS
chr19	41874928	41874979	+	intron-Distal	3.56007	7.07736	K562	ILF3
chr19	41859347	41859465	+	intron-Distal	4.86146	4.28089	HepG2	FAM120A
chr19	41859405	41859491	+	intron-Distal	3.24000	3.71694	HepG2	NKRF
chr19	41888826	41888897	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.42521	3.93614	HepG2	AQR
chr19	41883002	41883121	+	intron-Distal,intron-Proximal	4.17896	3.97747	K562	FUS
chr19	41883032	41883100	+	intron-Distal,intron-Proximal	4.54193	11.39706	K562	CSTF2T
chr19	41882568	41882654	+	5'-UTR,intron-Distal	4.93249	4.54675	K562	XRN2
chr19	41883446	41883509	+	intron-Distal	5.54802	10.67647	K562	CSTF2T
chr19	41877273	41877319	+	intron-Distal	5.42828	8.42544	K562	PTBP1
chr19	41889532	41889613	+	3'-UTR,intron-Distal,intron-Proximal	4.76982	5.57311	HepG2	RBFOX2
chr19	41871223	41871281	+	intron-Distal	3.87479	5.56048	K562	KHSRP
chr19	41873855	41873940	+	intron-Distal	4.44516	10.67131	K562	ILF3
chr19	41860266	41860317	+	intron-Distal,intron-Proximal	4.10331	4.10564	HepG2	CSTF2T
chr19	41883057	41883104	+	intron-Distal	4.07039	4.34810	K562	DDX52
chr19	41882794	41882863	+	intron-Distal,intron-Proximal	3.74809	8.15128	K562	CSTF2T
chr19	41880520	41880591	+	intron-Distal	3.56039	6.15644	K562	ILF3
chr19	41882364	41882422	+	5'-UTR,intron-Distal	4.42409	4.19345	HepG2	CSTF2T
chr19	41880324	41880374	+	intron-Distal	4.17802	6.45701	K562	CSTF2T
chr19	41882863	41882920	+	5'-UTR,intron-Distal	3.75906	4.70430	K562	CSTF2T
chr19	41889739	41889805	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.34438	8.29266	K562	AQR
chr19	41877316	41877378	+	intron-Distal	4.53880	7.22843	HepG2	PTBP1
chr19	41879357	41879386	+	intron-Distal	3.47886	6.59866	K562	ILF3
chr19	41879323	41879357	+	intron-Distal	3.23435	5.85087	K562	ILF3
chr19	41880323	41880363	+	intron-Distal	4.09685	4.08455	HepG2	CSTF2
chr19	41883538	41883594	+	intron-Distal	6.59804	10.61497	K562	AATF
chr19	41876622	41876682	+	intron-Distal	3.08708	4.91867	K562	ILF3
chr19	41882999	41883106	+	intron-Distal,intron-Proximal	4.22532	4.43431	HepG2	RBFOX2
chr19	41859305	41859361	+	intron-Distal	4.14596	4.08332	K562	NONO
chr19	41929084	41929163	+	intron-Proximal	5.29256	6.75320	K562	AQR
chr19	41929074	41929084	+	intron-Proximal	4.73482	4.86944	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTC-435M10.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTC-435M10.3 is not available on ENCORE database.
64 RBPs can affect the levels of CTC-435M10.3.

The Knockdown/knockout RNA-Seq assay for CTC-435M10.3 is not available on ENCORE database.

64 RBPs can affect the gene expression of CTC-435M10.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTC-435M10.3	ENSG00000255730.2	0.00000	39.28650	-99999.99999	4.79830	3.42080	HepG2	AATF
CTC-435M10.3	ENSG00000255730.2	13.42490	554.41310	-5.36800	91.15480	88.85210	HepG2	AKAP1
CTC-435M10.3	ENSG00000255730.2	55.72340	113.70950	-1.02900	1.98690	1.38820	HepG2	AUH
CTC-435M10.3	ENSG00000255730.2	251.68870	435.82540	-0.79210	3.52390	2.65810	HepG2	CIRBP
CTC-435M10.3	ENSG00000255730.2	100.81290	0.00000	99999.99990	35.68670	33.56270	HepG2	DDX19B
CTC-435M10.3	ENSG00000255730.2	121.95530	531.08610	-2.12260	31.09730	29.24570	HepG2	DDX3X
CTC-435M10.3	ENSG00000255730.2	0.00000	30.85830	-99999.99999	8.53390	7.25650	HepG2	DDX55
CTC-435M10.3	ENSG00000255730.2	83.62250	456.21330	-2.44770	13.69610	12.45120	HepG2	DDX6
CTC-435M10.3	ENSG00000255730.2	42.25940	89.51200	-1.08280	2.97510	2.02110	HepG2	EEF2
CTC-435M10.3	ENSG00000255730.2	0.00000	74.62240	-99999.99999	25.41370	22.33100	HepG2	EFTUD2
CTC-435M10.3	ENSG00000255730.2	81.76960	438.56950	-2.42320	6.54210	5.65380	HepG2	EIF2S1
CTC-435M10.3	ENSG00000255730.2	192.61400	484.67120	-1.33130	13.21580	11.84270	HepG2	EIF4A3
CTC-435M10.3	ENSG00000255730.2	0.00000	471.89490	-99999.99999	95.68240	92.34380	HepG2	EIF4B
CTC-435M10.3	ENSG00000255730.2	190.11510	8.53690	4.47690	29.77710	27.41200	HepG2	EIF4G2
CTC-435M10.3	ENSG00000255730.2	0.00000	130.57840	-99999.99999	26.69400	25.15130	HepG2	ETF1
CTC-435M10.3	ENSG00000255730.2	0.00000	64.94280	-99999.99999	22.21170	19.14100	HepG2	FAM120A
CTC-435M10.3	ENSG00000255730.2	18.44420	0.00000	99999.99990	3.79530	2.90570	HepG2	FIP1L1
CTC-435M10.3	ENSG00000255730.2	101.08600	8.44730	3.58090	3.87810	1.91770	HepG2	FMR1
CTC-435M10.3	ENSG00000255730.2	112.55590	489.01200	-2.11920	12.71040	11.33300	HepG2	FXR1
CTC-435M10.3	ENSG00000255730.2	25.18060	453.63080	-4.17110	67.37600	64.29410	HepG2	G3BP1
CTC-435M10.3	ENSG00000255730.2	220.15080	481.58670	-1.12930	10.27060	8.55200	HepG2	G3BP2
CTC-435M10.3	ENSG00000255730.2	0.00000	64.69830	-99999.99999	20.51710	18.35820	HepG2	GEMIN5
CTC-435M10.3	ENSG00000255730.2	33.56340	0.00000	99999.99990	9.52430	8.38480	HepG2	GPKOW
CTC-435M10.3	ENSG00000255730.2	26.74520	459.34120	-4.10220	67.54230	64.52710	HepG2	HNRNPK
CTC-435M10.3	ENSG00000255730.2	94.55560	8.26030	3.51680	2.63120	1.97340	HepG2	HNRNPL
CTC-435M10.3	ENSG00000255730.2	65.25730	0.00000	99999.99990	19.57750	17.45940	HepG2	HNRNPM
CTC-435M10.3	ENSG00000255730.2	66.98140	461.10600	-2.78330	21.96440	20.27810	HepG2	IGF2BP2
CTC-435M10.3	ENSG00000255730.2	0.00000	432.72740	-99999.99999	57.13920	53.37590	HepG2	IGF2BP3
CTC-435M10.3	ENSG00000255730.2	74.57660	0.00000	99999.99990	6.60590	4.49500	HepG2	ILF3
CTC-435M10.3	ENSG00000255730.2	169.50270	463.79350	-1.45220	13.28660	11.00420	HepG2	KHSRP
CTC-435M10.3	ENSG00000255730.2	111.52740	489.18270	-2.13300	29.85760	27.88560	HepG2	MAGOH
CTC-435M10.3	ENSG00000255730.2	46.49490	491.92080	-3.40330	52.76260	50.34350	HepG2	MATR3
CTC-435M10.3	ENSG00000255730.2	0.00000	76.05010	-99999.99999	19.18070	16.65650	HepG2	METAP2
CTC-435M10.3	ENSG00000255730.2	40.90490	503.50840	-3.62170	41.17880	38.96100	HepG2	NCBP2
CTC-435M10.3	ENSG00000255730.2	0.00000	448.40760	-99999.99999	108.80710	104.73600	HepG2	PABPC4
CTC-435M10.3	ENSG00000255730.2	31.87290	109.13430	-1.77570	2.04070	1.57760	HepG2	RBM22
CTC-435M10.3	ENSG00000255730.2	144.25520	38.57260	1.90290	3.34180	2.60570	HepG2	RBM25
CTC-435M10.3	ENSG00000255730.2	254.90980	40.74230	2.64530	7.40260	6.46730	HepG2	RECQL
CTC-435M10.3	ENSG00000255730.2	16.95430	0.00000	99999.99990	4.77000	3.72060	HepG2	RPS3A
CTC-435M10.3	ENSG00000255730.2	19.89710	123.25400	-2.63100	4.41750	3.82730	HepG2	SRFBP1
CTC-435M10.3	ENSG00000255730.2	119.99140	30.72810	1.96520	8.19360	7.12950	HepG2	SUPV3L1
CTC-435M10.3	ENSG00000255730.2	407.30600	38.40500	3.40660	51.05140	49.03860	HepG2	TAF15
CTC-435M10.3	ENSG00000255730.2	35.59040	0.00000	99999.99990	10.88580	9.59060	HepG2	TARDBP
CTC-435M10.3	ENSG00000255730.2	0.00000	57.74060	-99999.99999	18.27200	15.18720	HepG2	TROVE2
CTC-435M10.3	ENSG00000255730.2	70.00450	8.34690	3.06800	8.36590	6.71140	HepG2	TUFM
CTC-435M10.3	ENSG00000255730.2	63.38750	0.00000	99999.99990	19.75850	16.99540	HepG2	XPO5
CTC-435M10.3	ENSG00000255730.2	250.88160	30.24820	3.05200	18.41520	16.59650	HepG2	XRN2
CTC-435M10.3	ENSG00000255730.2	5.59460	25.41190	-2.18340	2.44290	1.33970	K562	AARS
CTC-435M10.3	ENSG00000255730.2	21.37850	61.68370	-1.52870	3.95360	2.47020	K562	ABCF1
CTC-435M10.3	ENSG00000255730.2	6.26710	25.39780	-2.01880	2.50470	1.67670	K562	BOP1
CTC-435M10.3	ENSG00000255730.2	0.50040	24.80690	-5.63140	5.73090	4.00510	K562	HNRNPF
CTC-435M10.3	ENSG00000255730.2	66.39710	26.85060	1.30610	3.64000	2.40410	K562	HNRNPL
CTC-435M10.3	ENSG00000255730.2	19.50520	60.11110	-1.62380	4.37690	3.38280	K562	HSPD1
CTC-435M10.3	ENSG00000255730.2	2.86080	22.01240	-2.94380	2.95110	1.98350	K562	KRR1
CTC-435M10.3	ENSG00000255730.2	4.43830	28.19720	-2.66750	3.64050	1.90570	K562	LIN28B
CTC-435M10.3	ENSG00000255730.2	4.35260	27.36130	-2.65220	3.46300	1.80160	K562	NUSAP1
CTC-435M10.3	ENSG00000255730.2	4.54120	27.11370	-2.57790	3.63350	1.97220	K562	PHF6
CTC-435M10.3	ENSG00000255730.2	12.39950	50.31860	-2.02080	5.18540	4.00600	K562	PPIG
CTC-435M10.3	ENSG00000255730.2	1.50030	29.55950	-4.30030	7.14580	4.21980	K562	QKI
CTC-435M10.3	ENSG00000255730.2	1.97410	22.74000	-3.52600	3.94420	2.75980	K562	RCC2
CTC-435M10.3	ENSG00000255730.2	18.69240	53.21120	-1.50930	3.43890	2.01280	K562	STAU1
CTC-435M10.3	ENSG00000255730.2	1.80720	25.46390	-3.81660	4.17590	2.96320	K562	TRIM56
CTC-435M10.3	ENSG00000255730.2	12.77860	51.88490	-2.02160	5.18040	3.14450	K562	TRIP6
CTC-435M10.3	ENSG00000255730.2	0.00000	26.44480	-99999.99999	8.17180	6.77680	K562	U2AF2
CTC-435M10.3	ENSG00000255730.2	27.89250	9.06670	1.62110	2.02840	1.30250	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTC-435M10.3 is not available on ENCORE database.

1 RBPs can affect the splicing of CTC-435M10.3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	CTC-435M10.3	ENSG00000255730.2	chr19	+	41924629	41924722			41919953	41920062	41925039	41925201	0.06500	0.00149	0.01711	included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTC-435M10.3

General Information

Functions

Localization

Domains (AlphaFold: CTC-435M10.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTC-435M10.3 is not avaliable on ENCORE database.

31 proteins are bound to CTC-435M10.3 RNA:

eCLIP assay for CTC-435M10.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTC-435M10.3 is not available on ENCORE database.

64 RBPs can affect the gene expression of CTC-435M10.3 :

The Knockdown/knockout RNA-Seq assay for CTC-435M10.3 is not available on ENCORE database.

1 RBPs can affect the splicing of CTC-435M10.3 :

The Knockdown/knockout RNA-Seq assay for CTC-435M10.3 is not avaliable on ENCORE database.