CHMP5

General Information

Gene Name       : CHMP5
Gene ID             : ENSG00000086065.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CHMP5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHMP5ENSG00000086065.1357.7653.7355.74ENCSR000AEF
HepG2CHMP5ENSG00000086065.1337.8148.9243.37ENCSR985KAT
K562CHMP5ENSG00000086065.1336.7535.6436.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHMP5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHMP5 RNA is bound by 17 proteins.  







eCLIP assay for CHMP5 is not avaliable on ENCORE database.





17 proteins are bound to CHMP5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr93328129933281378+3'-UTR3.959514.89282K562ZC3H11A
chr93328127833281388+3'-UTR4.3761210.49029K562NOLC1
chr93328128733281398+3'-UTR3.004724.73994HepG2FUBP3
chr93328130133281434+3'-UTR7.3893535.42624HepG2SUB1
chr93328092733280986+3'-UTR4.224913.98311K562IGF2BP1
chr93326506733265108+5'-UTR,CDS4.250244.04622HepG2GRWD1
chr93327815833278200+CDS,intron-Distal4.850855.87202K562UCHL5
chr93326605633266104+CDS3.080313.40321HepG2GRWD1
chr93327645633276545+CDS3.8770211.62230K562UCHL5
chr93326605633266151+CDS,intron-Proximal3.769518.17646HepG2AQR
chr93327645033276486+CDS,intron-Proximal3.288623.52026K562PUM1
chr93327117733271221+CDS4.139557.79539K562UCHL5
chr93327645333276552+CDS,intron-Proximal3.557399.71564K562ZNF800
chr93327645333276554+CDS,intron-Proximal3.448097.75004K562GRWD1
chr93327645133276497+CDS,intron-Proximal3.657606.25299K562ZNF622
chr93326594033266027+CDS,intron-Proximal4.442346.99120K562AQR
chr93326609833266157+CDS,intron-Proximal4.676804.68690HepG2PRPF8
chr93327116033271216+CDS3.881563.60954K562PUM1
chr93326607533266111+CDS3.787974.74268K562UCHL5
chr93327650133276552+CDS3.451534.74755K562ZNF622
chr93327810733278224+CDS,intron-Distal,intron-Proximal4.496275.86049K562LIN28B
chr93327648633276554+CDS4.212627.56507K562PUM1
chr93327116633271222+CDS,intron-Proximal3.087694.85577K562ZNF622
chr93326605833266112+CDS3.324316.21602K562ZNF622
chr93327649333276540+CDS3.355414.02291HepG2GRWD1
chr93327815633278204+CDS,intron-Distal3.452705.53307K562ZNF622
chr93326604533266155+CDS,intron-Proximal3.038676.11915K562AQR
chr93326514433265196+CDS,intron-Proximal5.153074.65563K562AQR
chr93327645033276545+CDS,intron-Proximal3.870917.28307HepG2BCLAF1
chr93327114933271177+CDS,intron-Proximal4.027946.11943K562UCHL5
chr93327062133270676+CDS3.310876.54511K562UCHL5
chr93326785133267890+CDS3.650497.52358K562UCHL5
chr93326547533265532+intron-Distal3.444413.32156HepG2DDX59
chr93326526533265384+intron-Distal4.664495.41525HepG2PCBP2
chr93326544133265527+intron-Distal4.167966.96393HepG2PCBP2
chr93326542433265521+intron-Distal4.536324.36307HepG2HNRNPK
chr93326541633265475+intron-Distal4.709664.35687HepG2DDX59
chr93326527833265368+intron-Distal3.886633.11802K562HNRNPK
chr93326546933265537+intron-Distal4.220344.47904K562HNRNPK
chr93326514533265186+intron-Proximal4.507525.25202HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHMP5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHMP5 is not available on ENCORE database.

  • 78 RBPs can affect the levels of CHMP5.  








The Knockdown/knockout RNA-Seq assay for CHMP5 is not available on ENCORE database.





78 RBPs can affect the gene expression of CHMP5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHMP5ENSG00000086065.92458.237701891.386900.378102.589602.07400HepG2AKAP1
CHMP5ENSG00000086065.9875.822001565.02190-0.837508.644407.30680HepG2ASCC1
CHMP5ENSG00000086065.9503.68900739.70460-0.554403.264702.28900HepG2BCLAF1
CHMP5ENSG00000086065.9956.76810761.870600.328502.527201.78860HepG2CALR
CHMP5ENSG00000086065.9711.06970878.09710-0.304402.654801.98940HepG2DKC1
CHMP5ENSG00000086065.9857.118101496.29650-0.803806.901905.99410HepG2EIF2S1
CHMP5ENSG00000086065.9992.816601653.72450-0.736106.984405.96830HepG2EIF4A3
CHMP5ENSG00000086065.9983.836301609.86380-0.710405.711904.74640HepG2EIF4B
CHMP5ENSG00000086065.9637.42210931.96740-0.548003.290702.07000HepG2FUS
CHMP5ENSG00000086065.91310.841401668.11210-0.347702.414801.76640HepG2FXR1
CHMP5ENSG00000086065.91183.303701547.64300-0.387302.626201.97710HepG2G3BP1
CHMP5ENSG00000086065.9947.560601642.72820-0.793809.082407.45590HepG2G3BP2
CHMP5ENSG00000086065.9428.57980563.18540-0.394002.377801.55420HepG2GEMIN5
CHMP5ENSG00000086065.91189.452301566.60480-0.397303.279202.52040HepG2HNRNPK
CHMP5ENSG00000086065.9449.49820627.32930-0.480903.842602.74100HepG2HNRNPM
CHMP5ENSG00000086065.91005.784001573.22510-0.645405.399004.48360HepG2IGF2BP2
CHMP5ENSG00000086065.9844.006401582.24630-0.906609.344107.40670HepG2KHSRP
CHMP5ENSG00000086065.91057.337501668.69250-0.658305.810104.87070HepG2MAGOH
CHMP5ENSG00000086065.91213.570501678.10140-0.467603.473302.77310HepG2MATR3
CHMP5ENSG00000086065.91183.627601717.68650-0.537304.603903.79790HepG2NCBP2
CHMP5ENSG00000086065.9814.946201529.97100-0.908708.657607.40010HepG2PABPC4
CHMP5ENSG00000086065.9837.681501628.74570-0.9593028.3286026.73220HepG2PCBP1
CHMP5ENSG00000086065.9349.86470523.07740-0.580204.905903.29000HepG2PKM
CHMP5ENSG00000086065.9406.39750559.07680-0.460203.935803.02780HepG2PRPF4
CHMP5ENSG00000086065.9969.354701657.28710-0.7737018.4606017.28180HepG2PTBP1
CHMP5ENSG00000086065.91098.715201400.35000-0.350002.650102.06460HepG2PUF60
CHMP5ENSG00000086065.91208.375601486.60240-0.298902.783502.18930HepG2PUM1
CHMP5ENSG00000086065.9801.03730934.85550-0.222901.836901.31310HepG2PUS1
CHMP5ENSG00000086065.91384.986701794.93110-0.374104.511403.74120HepG2QKI
CHMP5ENSG00000086065.91605.77360851.463000.915206.663205.59540HepG2RAVER1
CHMP5ENSG00000086065.91889.782401403.879300.428706.185905.48640HepG2RBM22
CHMP5ENSG00000086065.9961.136901628.99710-0.7612012.7449011.36020HepG2RBM25
CHMP5ENSG00000086065.9951.938001844.42020-0.9542028.1357026.78190HepG2NELFE
CHMP5ENSG00000086065.91013.412101717.79260-0.7613018.9428017.56980HepG2RECQL
CHMP5ENSG00000086065.9468.29530615.45740-0.394202.640502.03850HepG2RPS19
CHMP5ENSG00000086065.9822.45640638.841300.364402.259501.54200HepG2RRP9
CHMP5ENSG00000086065.9441.82300617.73160-0.483503.207202.19130HepG2SERBP1
CHMP5ENSG00000086065.9499.325701179.38180-1.240004.433702.62790HepG2SF1
CHMP5ENSG00000086065.9906.499801725.49030-0.9286026.6441025.12900HepG2SF3B4
CHMP5ENSG00000086065.9602.68370804.17440-0.416104.925204.10720HepG2SMN1
CHMP5ENSG00000086065.9563.662001053.19290-0.901902.816101.49390HepG2SNRNP200
CHMP5ENSG00000086065.91480.31210762.306700.957408.499307.13300HepG2SNRNP70
CHMP5ENSG00000086065.92403.075401585.634000.5997016.3924015.44050HepG2SRFBP1
CHMP5ENSG00000086065.91365.007801801.02180-0.399906.431405.78360HepG2SRSF1
CHMP5ENSG00000086065.91237.825201465.21290-0.243302.697702.15140HepG2SRSF9
CHMP5ENSG00000086065.9861.363901376.71270-0.6765014.3460013.36140HepG2SSB
CHMP5ENSG00000086065.91230.446501572.46770-0.353804.956704.16620HepG2SUCLG1
CHMP5ENSG00000086065.91136.08620833.153900.447303.386702.64700HepG2SUPV3L1
CHMP5ENSG00000086065.91147.478401618.78260-0.496407.541106.69000HepG2TAF15
CHMP5ENSG00000086065.91145.436601487.48950-0.377003.889702.90680HepG2TIA1
CHMP5ENSG00000086065.9579.22930752.43610-0.377403.072602.55020HepG2TIAL1
CHMP5ENSG00000086065.9548.14200759.13030-0.469805.354004.62060HepG2TRIM56
CHMP5ENSG00000086065.9595.387601226.20650-1.042303.296802.21720HepG2U2AF2
CHMP5ENSG00000086065.9619.18990755.85310-0.287702.432901.77110HepG2UPF1
CHMP5ENSG00000086065.9562.54380729.74560-0.375402.302401.74490HepG2UTP3
CHMP5ENSG00000086065.9623.72430820.14680-0.395001.955201.33790HepG2XRN2
CHMP5ENSG00000086065.91087.01220831.292900.386805.483004.77990HepG2ZNF622
CHMP5ENSG00000086065.91653.601101247.294300.406706.361905.55340K562AGGF1
CHMP5ENSG00000086065.91619.615501297.875200.319402.122901.54720K562AKAP8L
CHMP5ENSG00000086065.9697.44280847.30970-0.280802.231001.36830K562BCLAF1
CHMP5ENSG00000086065.9191.30370350.08590-0.871806.655204.84480K562CCAR1
CHMP5ENSG00000086065.9230.53390391.89010-0.765505.688903.65910K562DHX30
CHMP5ENSG00000086065.91681.550801396.550600.267802.925602.02210K562DKC1
CHMP5ENSG00000086065.9212.26940356.11030-0.746403.392802.26940K562EIF3A
CHMP5ENSG00000086065.9662.66130897.67840-0.437904.760303.73120K562EIF3G
CHMP5ENSG00000086065.91440.831401826.60360-0.342304.290403.12850K562EIF4G2
CHMP5ENSG00000086065.91117.13070741.604300.591005.757404.50390K562FIP1L1
CHMP5ENSG00000086065.91186.64960923.365300.361801.913801.33770K562G3BP2
CHMP5ENSG00000086065.9540.39020738.93570-0.451403.471302.81300K562HNRNPC
CHMP5ENSG00000086065.9469.84350659.88930-0.490003.842702.47260K562HNRNPF
CHMP5ENSG00000086065.9889.48680610.007400.544004.092002.94560K562HNRNPM
CHMP5ENSG00000086065.91390.733801005.419800.467904.373903.38030K562HSPD1
CHMP5ENSG00000086065.91683.005201377.338600.289102.485401.70780K562KIF1C
CHMP5ENSG00000086065.9522.18390661.12500-0.340402.181301.40320K562METAP2
CHMP5ENSG00000086065.91479.574901081.514000.452002.920502.01090K562NAA15
CHMP5ENSG00000086065.91143.69530841.906900.441903.699102.72960K562PPIG
CHMP5ENSG00000086065.91001.49810712.587000.490904.055103.14540K562PRPF8
CHMP5ENSG00000086065.9465.14890662.53850-0.510303.622602.56860K562PSIP1
CHMP5ENSG00000086065.9961.227101218.62180-0.342303.048402.35490K562PTBP1
CHMP5ENSG00000086065.91672.769102076.98860-0.312303.821902.68900K562PUM2
CHMP5ENSG00000086065.92149.858601287.072200.7400011.030109.99560K562PUS1
CHMP5ENSG00000086065.91632.032201254.110900.379904.685203.93410K562RBM15
CHMP5ENSG00000086065.9423.76510604.50580-0.512503.918402.73750K562RCC2
CHMP5ENSG00000086065.9336.59670573.05270-0.767606.845405.02690K562SRFBP1
CHMP5ENSG00000086065.9423.30750664.51190-0.650605.955404.30600K562SRSF4
CHMP5ENSG00000086065.9434.27610637.24810-0.553203.784502.68530K562TIAL1
CHMP5ENSG00000086065.9452.62490677.02190-0.580904.566903.28170K562TRIM56
CHMP5ENSG00000086065.9561.51880977.46220-0.7997015.2006013.67370K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHMP5 is not available on ENCORE database.





2 RBPs can affect the splicing of CHMP5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHMP5ENSG00000086065.9chr9+332678503326789733266007332661123327114933271221-0.063000.000000.00000excludedHepG2U2AF2
SECHMP5ENSG00000086065.9chr9+332781103327822333276453332765623328080633281537-0.065000.005490.05709excludedHepG2U2AF2
SECHMP5ENSG00000086065.9chr9+332678503326789733266007332661123327114933271221-0.061000.000000.00005excludedK562AQR
SECHMP5ENSG00000086065.9chr9+332780643327822333276453332765623328080633281537-0.068000.011140.08842excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHMP5 is not avaliable on ENCORE database.