CHMP2A

General Information

Gene Name       : CHMP2A
Gene ID             : ENSG00000130724.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CHMP2A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHMP2AENSG00000130724.854.2279.4866.85ENCSR000AEF
HepG2CHMP2AENSG00000130724.873.9644.2459.10ENCSR985KAT
K562CHMP2AENSG00000130724.879.5975.4377.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHMP2A is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHMP2A RNA is bound by 15 proteins.  







eCLIP assay for CHMP2A is not avaliable on ENCORE database.





15 proteins are bound to CHMP2A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195906294859063022-3'-UTR,CDS,intron-Distal4.619479.01592K562PABPC4
chr195906295659062995-3'-UTR,intron-Distal3.161728.13949K562YBX3
chr195906553259065597-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.0118212.18924K562YBX3
chr195906298959063004-3'-UTR,intron-Distal7.3501282.12392K562LIN28B
chr195906300459063019-3'-UTR,intron-Distal6.6498344.73632K562LIN28B
chr195906557559065606-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.814656.69401K562DDX3X
chr195906295259062989-3'-UTR,intron-Distal8.3077286.44823K562LIN28B
chr195906551959065601-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.125567.73111HepG2GRWD1
chr195906543259065604-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.046483.96434K562SRSF7
chr195906296159063044-3'-UTR,CDS,intron-Distal3.872936.59937HepG2LIN28B
chr195906635359066375-5'-UTR,intron-Distal,intron-Proximal3.239354.30677K562YBX3
chr195906623859066312-5'-UTR,intron-Distal4.472378.11373K562LIN28B
chr195906635459066379-5'-UTR,intron-Distal,intron-Proximal4.289337.79539K562UCHL5
chr195906637959066427-5'-UTR,intron-Distal,intron-Proximal4.264318.07592K562UCHL5
chr195906635459066371-5'-UTR,intron-Distal,intron-Proximal4.733923.69821K562DDX3X
chr195906636359066420-5'-UTR,intron-Distal,intron-Proximal3.438629.04720K562ZNF622
chr195906544759065519-CDS,intron-Distal,intron-Proximal4.902248.08487HepG2GRWD1
chr195906348259063523-CDS,intron-Distal3.471838.11704K562UCHL5
chr195906535459065421-CDS,intron-Distal,intron-Proximal3.533644.88100K562AQR
chr195906327559063334-CDS,intron-Distal,intron-Proximal3.141785.45873K562BUD13
chr195906301959063050-CDS,intron-Distal4.8983211.48353K562LIN28B
chr195906331759063396-CDS,intron-Distal,intron-Proximal4.8658313.32540K562EFTUD2
chr195906552359065575-CDS,intron-Distal,intron-Proximal3.817838.67207K562DDX3X
chr195906376959063805-CDS,intron-Distal4.127824.21087HepG2GRWD1
chr195906541059065447-CDS,intron-Distal,intron-Proximal4.238704.69889HepG2GRWD1
chr195906327259063334-CDS,intron-Distal,intron-Proximal3.2117410.55732K562ZNF622
chr195906329859063377-CDS,intron-Distal,intron-Proximal5.334435.99517HepG2EFTUD2
chr195906369659063745-CDS,intron-Distal3.7717913.18786K562YBX3
chr195906327559063334-CDS,intron-Distal,intron-Proximal3.2592710.70099K562UCHL5
chr195906342059063485-CDS,intron-Distal,intron-Proximal3.369843.34848HepG2PPIG
chr195906541159065451-CDS,intron-Distal,intron-Proximal3.8044312.25709K562ZNF622
chr195906304859063114-CDS,intron-Distal4.214223.72779HepG2LARP4
chr195906305459063118-CDS,intron-Distal3.688028.41415K562PABPC4
chr195906342259063482-CDS,intron-Distal,intron-Proximal5.3577118.06294K562UCHL5
chr195906378059063806-CDS,intron-Distal,intron-Proximal3.674039.45155K562UCHL5
chr195906366359063696-CDS,intron-Distal3.323668.04936K562YBX3
chr195906327159063300-CDS,intron-Distal,intron-Proximal4.469326.20355K562GRWD1
chr195906378459063806-CDS,intron-Distal,intron-Proximal3.329044.41873K562ZNF800
chr195906545459065507-CDS,intron-Distal,intron-Proximal3.690587.79255K562UCHL5
chr195906342159063507-CDS,intron-Distal,intron-Proximal4.0503216.97654K562ZNF622
chr195906540059065457-CDS,intron-Distal,intron-Proximal4.393964.08604HepG2PPIG
chr195906552059065572-CDS,intron-Distal,intron-Proximal3.378833.34231K562RBM15
chr195906329859063335-CDS,intron-Distal,intron-Proximal3.358493.49777K562ZNF800
chr195906541159065454-CDS,intron-Distal,intron-Proximal3.279908.98598K562UCHL5
chr195906346259063526-CDS,intron-Distal,intron-Proximal3.197523.49777K562ZNF800
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHMP2A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHMP2A is not available on ENCORE database.

  • 74 RBPs can affect the levels of CHMP2A.  








The Knockdown/knockout RNA-Seq assay for CHMP2A is not available on ENCORE database.





74 RBPs can affect the gene expression of CHMP2A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHMP2AENSG00000130724.4647.23170489.972400.401503.808503.11620HepG2ACO1
CHMP2AENSG00000130724.41177.68310854.926400.462003.016702.46410HepG2AKAP1
CHMP2AENSG00000130724.4592.32010489.810500.274101.999901.42240HepG2CKAP4
CHMP2AENSG00000130724.4613.59110766.64060-0.321301.899101.31770HepG2CPSF6
CHMP2AENSG00000130724.4944.11040709.895400.411203.638202.92100HepG2CELF1
CHMP2AENSG00000130724.4589.75230453.128800.380103.524402.59700HepG2DDX19B
CHMP2AENSG00000130724.4606.14180818.96800-0.434202.719602.09820HepG2DDX3X
CHMP2AENSG00000130724.4706.64950434.647400.701004.371203.42250HepG2DDX55
CHMP2AENSG00000130724.4887.89740659.856900.428103.144802.07320HepG2DDX5
CHMP2AENSG00000130724.41086.08540703.479600.626505.003604.19470HepG2DDX6
CHMP2AENSG00000130724.4626.64520428.420800.548505.531304.56620HepG2DNAJC21
CHMP2AENSG00000130724.4537.96800424.642200.341202.808702.15230HepG2DNAJC2
CHMP2AENSG00000130724.4506.35460747.40870-0.561703.783603.04090HepG2EIF4A3
CHMP2AENSG00000130724.4605.03640753.03530-0.315702.253101.48390HepG2EIF4G1
CHMP2AENSG00000130724.4631.93090478.741400.400402.771001.93520HepG2EWSR1
CHMP2AENSG00000130724.4533.31760742.60370-0.477603.233602.26810HepG2G3BP2
CHMP2AENSG00000130724.4262.46530431.42820-0.717005.020903.81290HepG2GEMIN5
CHMP2AENSG00000130724.4597.34880467.749700.352702.873801.87960HepG2HDGF
CHMP2AENSG00000130724.4592.62710477.924900.310202.356201.79340HepG2HNRNPU
CHMP2AENSG00000130724.4575.35030447.861700.361303.128002.04540HepG2KIF1C
CHMP2AENSG00000130724.4542.00300754.32230-0.476903.163602.46230HepG2MAGOH
CHMP2AENSG00000130724.4502.86730735.37490-0.548304.274003.34980HepG2NSUN2
CHMP2AENSG00000130724.4616.15620412.736800.578002.639901.77720HepG2PABPC1
CHMP2AENSG00000130724.4636.32240473.062000.427603.841702.86110HepG2PARN
CHMP2AENSG00000130724.4547.46360716.37050-0.387903.476802.81380HepG2PCBP1
CHMP2AENSG00000130724.4562.19840728.96650-0.374803.117002.54350HepG2PTBP1
CHMP2AENSG00000130724.41052.76050764.433100.461605.147604.49490HepG2RBM22
CHMP2AENSG00000130724.4636.46210811.24250-0.350102.937102.38190HepG2NELFE
CHMP2AENSG00000130724.4525.32190755.61140-0.524405.685704.84190HepG2RECQL
CHMP2AENSG00000130724.4599.99140471.521500.347502.015701.48330HepG2RPS19
CHMP2AENSG00000130724.4810.23470425.612400.9287018.4847017.03430HepG2SAFB2
CHMP2AENSG00000130724.4729.39240496.334500.555307.444206.46810HepG2SMN1
CHMP2AENSG00000130724.4663.13180792.14030-0.256501.835601.42790HepG2SRSF1
CHMP2AENSG00000130724.4536.40360644.46900-0.264801.817301.35260HepG2SRSF9
CHMP2AENSG00000130724.4550.54540394.708200.480002.553201.50190HepG2STIP1
CHMP2AENSG00000130724.4591.74100808.37000-0.450003.286102.50300HepG2TARDBP
CHMP2AENSG00000130724.4576.70560464.387700.312401.958701.52260HepG2TIAL1
CHMP2AENSG00000130724.4566.39030468.545100.273501.821801.34510HepG2TRIM56
CHMP2AENSG00000130724.4540.25380717.70710-0.409802.312901.73350HepG2U2AF1
CHMP2AENSG00000130724.4924.47790713.107700.374403.505102.73360HepG2UPF1
CHMP2AENSG00000130724.4544.64930688.47170-0.338102.217201.66800HepG2UTP3
CHMP2AENSG00000130724.41022.043201306.26440-0.354002.893601.68260K562AARS
CHMP2AENSG00000130724.43151.511002273.854300.4708011.3084010.25460K562AGGF1
CHMP2AENSG00000130724.43498.706002498.767600.485506.563204.88610K562AKAP8
CHMP2AENSG00000130724.43387.812602366.084200.517807.133906.04330K562AKAP8L
CHMP2AENSG00000130724.42478.762401640.754900.595204.414803.70520K562AQR
CHMP2AENSG00000130724.43051.535602482.659600.297504.088302.95840K562ATP5C1
CHMP2AENSG00000130724.41643.376702114.47110-0.363603.027802.34950K562DDX47
CHMP2AENSG00000130724.43022.420602545.851700.247503.224802.27000K562DKC1
CHMP2AENSG00000130724.41197.42960899.636700.412402.649301.33650K562DNAJC21
CHMP2AENSG00000130724.41106.57970825.272500.423103.068102.10460K562EFTUD2
CHMP2AENSG00000130724.41425.492101164.548800.291602.910302.17610K562EIF2S2
CHMP2AENSG00000130724.4780.633901150.00110-0.558908.024207.06150K562FXR1
CHMP2AENSG00000130724.41141.86040896.721500.348602.846601.39190K562G3BP1
CHMP2AENSG00000130724.4370.99380683.78660-0.882207.292806.02870K562G3BP2
CHMP2AENSG00000130724.41576.500701164.709300.436704.354103.36410K562GPKOW
CHMP2AENSG00000130724.42084.903001551.742700.426004.587803.61560K562GRSF1
CHMP2AENSG00000130724.4916.264101429.48620-0.641708.591407.59090K562HNRNPC
CHMP2AENSG00000130724.41327.01770938.400700.499803.612202.38000K562IGF2BP2
CHMP2AENSG00000130724.41224.08250954.272400.359102.943201.70590K562IGF2BP3
CHMP2AENSG00000130724.43586.029502510.881300.514104.805303.66140K562KIF1C
CHMP2AENSG00000130724.4910.696501384.04960-0.603907.230204.85720K562LARP7
CHMP2AENSG00000130724.43017.647902403.633000.328103.707102.39710K562MAK16
CHMP2AENSG00000130724.42855.650601971.607300.534304.364003.17940K562NAA15
CHMP2AENSG00000130724.41372.336601104.213400.313502.829001.58590K562NCBP2
CHMP2AENSG00000130724.41061.61190803.091800.402502.701501.96060K562PRPF8
CHMP2AENSG00000130724.44130.660702346.250600.8159015.1541013.92400K562PUS1
CHMP2AENSG00000130724.43046.371402286.279700.414004.171303.45910K562RBM15
CHMP2AENSG00000130724.41857.523901471.800600.335703.014901.33380K562RBM17
CHMP2AENSG00000130724.4879.97350648.070200.441203.721802.14940K562RBM25
CHMP2AENSG00000130724.42260.759001920.735200.235002.542601.75880K562SF3A3
CHMP2AENSG00000130724.41007.85110710.540200.504205.577604.33670K562SF3B4
CHMP2AENSG00000130724.41433.209301967.82600-0.457409.707708.06810K562SRPK2
CHMP2AENSG00000130724.4703.10770938.93760-0.417303.254102.49140K562SRSF1
CHMP2AENSG00000130724.41348.71780886.898900.604606.908405.13960K562SRSF5
CHMP2AENSG00000130724.41352.37590950.141500.509204.639503.71700K562TARDBP
CHMP2AENSG00000130724.41231.13700916.551500.425603.426602.50060K562TIA1
CHMP2AENSG00000130724.42272.951801951.250000.220102.536201.32680K562TROVE2
CHMP2AENSG00000130724.41598.719301836.53650-0.200102.240801.47220K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHMP2A is not available on ENCORE database.





6 RBPs can affect the splicing of CHMP2A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCHMP2AENSG00000130724.4chr19-5906362559063858590636255906380559065411590656030.099000.000000.00000longerK562AQR
RICHMP2AENSG00000130724.4chr19-5906293259063334590629325906314359063272590633340.056000.002750.04910includedHepG2PCBP2
RICHMP2AENSG00000130724.4chr19-5906293259063334590629325906314359063272590633340.100000.000000.00000includedHepG2U2AF2
RICHMP2AENSG00000130724.4chr19-5906293259063334590629325906314359063272590633340.067000.000000.00013includedK562PRPF8
RICHMP2AENSG00000130724.4chr19-5906293259063334590629325906314359063272590633340.084000.000000.00004includedHepG2PCBP1
RICHMP2AENSG00000130724.4chr19-5906293259063334590629325906314359063272590633340.141000.000600.00755includedHepG2U2AF1
RICHMP2AENSG00000130724.4chr19-5906293259063334590629325906314359063272590633340.107000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHMP2A is not avaliable on ENCORE database.