CDIP1

General Information

Gene Name       : CDIP1
Gene ID             : ENSG00000089486.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDIP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDIP1ENSG00000089486.166.4911.909.20ENCSR000AEF
HepG2CDIP1ENSG00000089486.1650.7133.3942.05ENCSR985KAT
K562CDIP1ENSG00000089486.160.060.000.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDIP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDIP1 RNA is bound by 20 proteins.  







eCLIP assay for CDIP1 is not avaliable on ENCORE database.





20 proteins are bound to CDIP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1645620104562065-3'-UTR,intron-Distal4.5988710.90209HepG2AKAP1
chr1645613834561485-3'-UTR,intron-Distal,intron-Proximal4.3969717.57713HepG2AKAP1
chr1645645854564666-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.1835216.31967HepG2DDX3X
chr1645615454561648-3'-UTR,intron-Distal5.5660925.71222HepG2AKAP1
chr1645641104564147-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.023903.49905HepG2PPIG
chr1645625354562552-3'-UTR,CDS,intron-Distal4.510245.35992HepG2UPF1
chr1645620794562245-3'-UTR,intron-Distal4.4438118.63162HepG2UPF1
chr1645626394562792-3'-UTR,CDS,intron-Distal,intron-Proximal4.732516.03362HepG2AQR
chr1645618214561867-3'-UTR,intron-Distal,intron-Proximal5.7322714.18129HepG2AKAP1
chr1645624484562529-3'-UTR,CDS,intron-Distal,intron-Proximal4.2368316.61233HepG2UPF1
chr1645622714562330-3'-UTR,intron-Distal,intron-Proximal4.092736.03373HepG2LARP4
chr1645622744562327-3'-UTR,intron-Distal,intron-Proximal3.962169.25614HepG2UPF1
chr1645626354562686-3'-UTR,CDS,intron-Distal3.673683.93645HepG2PPIG
chr1645624024562448-3'-UTR,intron-Distal,intron-Proximal5.7561713.55250HepG2UPF1
chr1645620924562158-3'-UTR,intron-Distal4.6641612.41865HepG2AKAP1
chr1645613884561453-3'-UTR,intron-Distal,intron-Proximal4.6860812.47468HepG2UPF1
chr1645645754564617-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.281183.05460HepG2PPIG
chr1645624474562527-3'-UTR,CDS,intron-Distal,intron-Proximal4.4185417.84219HepG2AKAP1
chr1645615384561642-3'-UTR,intron-Distal5.6814426.30461HepG2UPF1
chr1645615664561641-3'-UTR,intron-Distal4.4981710.26584HepG2DDX55
chr1645615764561646-3'-UTR,intron-Distal3.030355.65670HepG2LARP4
chr1645622604562326-3'-UTR,intron-Distal,intron-Proximal4.7656411.17016HepG2AKAP1
chr1645620164562077-3'-UTR,intron-Distal4.8390113.63746HepG2UPF1
chr1645617114561821-3'-UTR,intron-Distal,intron-Proximal5.4495830.91413HepG2AKAP1
chr1645624024562447-3'-UTR,intron-Distal,intron-Proximal4.9034615.50467HepG2AKAP1
chr1645617264561867-3'-UTR,intron-Distal,intron-Proximal6.1071538.18338HepG2UPF1
chr1645645734564648-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.175934.69071HepG2GRWD1
chr1645883694588444-5'-UTR,intron-Distal,intron-Proximal3.582265.18989HepG2PRPF4
chr1645883654588443-5'-UTR,intron-Distal,intron-Proximal3.039695.63886HepG2FAM120A
chr1645882684588331-5'-UTR,intron-Distal3.970156.56790HepG2FAM120A
chr1645882504588344-5'-UTR,intron-Distal4.095745.49785HepG2XRN2
chr1645883584588449-5'-UTR,intron-Distal,intron-Proximal3.807779.22172HepG2CSTF2T
chr1645646694564748-5'-UTR,intron-Distal,intron-Proximal3.531945.09328HepG2SF3B4
chr1645887134588768-5'-UTR,intron-Distal5.4198527.83502HepG2DDX3X
chr1645887004588713-5'-UTR,intron-Distal4.9027423.68939HepG2DDX3X
chr1645882694588333-5'-UTR,intron-Distal3.893933.63122HepG2PRPF4
chr1645629374563016-CDS,intron-Distal,intron-Proximal3.810873.06406HepG2IGF2BP1
chr1645636494563701-CDS,intron-Distal,intron-Proximal4.088365.93840HepG2PRPF8
chr1645881884588232-intron-Distal3.359024.35339HepG2CSTF2T
chr1645633724563446-intron-Distal4.188324.17531HepG2RBFOX2
chr1645876074587672-intron-Distal4.522633.82670HepG2SFPQ
chr1645630794563125-intron-Distal,intron-Proximal3.980333.31322HepG2SF3B4
chr1645879884588066-intron-Distal3.392998.88462HepG2NKRF
chr1645886154588677-intron-Distal4.5225012.26771HepG2RBM22
chr1645632424563290-intron-Distal3.788083.14375HepG2RBFOX2
chr1645636084563691-intron-Distal,intron-Proximal3.541454.25955HepG2RBFOX2
chr1645885754588681-intron-Distal3.838918.04077HepG2CSTF2T
chr1645632904563372-intron-Distal4.004017.41476HepG2RBFOX2
chr1645695594569634-intron-Distal4.204314.60713HepG2XPO5
chr1645879984588066-intron-Distal3.031996.70485HepG2CSTF2T
chr1645684464568581-intron-Distal3.189185.01757HepG2RBFOX2
chr1645845384584592-intron-Distal4.034563.63902HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDIP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDIP1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of CDIP1.  








The Knockdown/knockout RNA-Seq assay for CDIP1 is not available on ENCORE database.





80 RBPs can affect the gene expression of CDIP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDIP1ENSG00000089486.123012.338501680.717200.8417011.487909.78870HepG2ABCF1
CDIP1ENSG00000089486.122042.640801657.714000.301104.013403.10160HepG2AKAP8L
CDIP1ENSG00000089486.122916.344301157.256101.3334035.9273034.20140HepG2BOP1
CDIP1ENSG00000089486.12715.54670887.26170-0.310302.181901.49150HepG2CALR
CDIP1ENSG00000089486.122075.157601649.575700.331005.880604.97660HepG2CKAP4
CDIP1ENSG00000089486.121306.74900927.165900.495002.936301.83060HepG2CSTF2
CDIP1ENSG00000089486.12774.379001722.46740-1.1534036.3082034.51980HepG2CELF1
CDIP1ENSG00000089486.121970.381101526.027700.368606.759005.54410HepG2DDX19B
CDIP1ENSG00000089486.121767.827601110.082000.671209.430408.25780HepG2DDX21
CDIP1ENSG00000089486.12763.35770962.08660-0.333802.369001.46210HepG2DHX30
CDIP1ENSG00000089486.122030.677001578.652400.363205.528104.63030HepG2DKC1
CDIP1ENSG00000089486.121165.86540988.671000.237702.505201.87860HepG2DNAJC2
CDIP1ENSG00000089486.12605.579301022.57860-0.755806.518904.84010HepG2AGO1
CDIP1ENSG00000089486.121390.584201791.06220-0.365102.618102.04130HepG2EIF2S1
CDIP1ENSG00000089486.123642.618001979.172100.8800011.8957010.59590HepG2EIF4A3
CDIP1ENSG00000089486.121858.501902794.62470-0.5885015.8279014.58360HepG2ETF1
CDIP1ENSG00000089486.121981.255501612.295000.297202.636301.82080HepG2EWSR1
CDIP1ENSG00000089486.121193.104801696.99660-0.508303.261902.43230HepG2FIP1L1
CDIP1ENSG00000089486.12659.118801064.28450-0.691302.409701.46830HepG2FTO
CDIP1ENSG00000089486.12818.684701277.15620-0.641608.001706.70120HepG2FUBP3
CDIP1ENSG00000089486.12847.196901852.61620-1.1288018.0221016.40180HepG2G3BP1
CDIP1ENSG00000089486.12982.68770705.134600.478702.951802.02470HepG2GEMIN5
CDIP1ENSG00000089486.121826.239401233.400500.566102.924701.78000HepG2GRSF1
CDIP1ENSG00000089486.121598.922401127.275600.504203.232001.75430HepG2HNRNPA0
CDIP1ENSG00000089486.121245.810601007.060700.306802.275201.68460HepG2HNRNPA1
CDIP1ENSG00000089486.121581.074801120.160400.497105.234304.30320HepG2HNRNPC
CDIP1ENSG00000089486.123911.053601956.650300.9991042.9241040.73450HepG2HNRNPF
CDIP1ENSG00000089486.121260.897401876.54440-0.573606.607105.56100HepG2HNRNPK
CDIP1ENSG00000089486.121191.063201687.01980-0.5022010.838509.58240HepG2HNRNPL
CDIP1ENSG00000089486.12935.776901149.19860-0.296401.847301.32290HepG2HNRNPLL
CDIP1ENSG00000089486.12922.086301170.50980-0.344202.915601.94020HepG2HNRNPM
CDIP1ENSG00000089486.12534.958401112.75520-1.0566027.0937025.35740HepG2HNRNPU
CDIP1ENSG00000089486.124607.013601926.729301.2576045.5758043.24100HepG2IGF2BP1
CDIP1ENSG00000089486.122474.526901883.052100.394002.750102.07670HepG2IGF2BP2
CDIP1ENSG00000089486.121006.958101894.20030-0.911609.949607.95920HepG2KHSRP
CDIP1ENSG00000089486.122893.052201353.071601.0963013.3672011.57820HepG2LARP4
CDIP1ENSG00000089486.123094.724701998.091900.631107.385206.32740HepG2MAGOH
CDIP1ENSG00000089486.123802.837502009.195200.9204013.3968012.08110HepG2MATR3
CDIP1ENSG00000089486.121061.861001372.89020-0.370603.184002.31880HepG2MSI2
CDIP1ENSG00000089486.121152.302501836.45310-0.6724012.5317010.96300HepG2NOL12
CDIP1ENSG00000089486.12743.275701019.05690-0.455302.929102.15900HepG2NSUN2
CDIP1ENSG00000089486.121294.940001831.11200-0.499804.462003.55810HepG2PABPC4
CDIP1ENSG00000089486.12839.951801101.44770-0.391004.627803.56480HepG2PARN
CDIP1ENSG00000089486.121580.937601984.75800-0.328204.694303.93850HepG2PCBP1
CDIP1ENSG00000089486.121574.802102019.58670-0.358904.835104.15510HepG2PTBP1
CDIP1ENSG00000089486.122879.300901753.073200.7157011.4899010.38690HepG2PUF60
CDIP1ENSG00000089486.121088.912601860.98560-0.7732025.2203023.79570HepG2PUM1
CDIP1ENSG00000089486.121534.536602187.21690-0.511308.206407.21840HepG2QKI
CDIP1ENSG00000089486.12230.900201060.23730-2.1990020.7963019.04060HepG2RAVER1
CDIP1ENSG00000089486.121391.294701985.05710-0.512806.702805.69360HepG2RBM25
CDIP1ENSG00000089486.121388.782201030.324600.430602.818801.74930HepG2RCC2
CDIP1ENSG00000089486.121754.087002093.35530-0.255103.072302.42740HepG2RECQL
CDIP1ENSG00000089486.128102.022202107.981401.9423052.2559050.21540HepG2RPLP0
CDIP1ENSG00000089486.121941.536001042.163300.897508.170006.61990HepG2RPS10
CDIP1ENSG00000089486.121948.61070770.751401.3380035.6114033.83720HepG2RPS19
CDIP1ENSG00000089486.122152.369501170.096000.8792013.2022011.55630HepG2RPS2
CDIP1ENSG00000089486.121774.859901338.476400.407002.389201.64280HepG2RPS3A
CDIP1ENSG00000089486.12718.915401125.92950-0.647203.497902.62870HepG2RRP9
CDIP1ENSG00000089486.122228.980401509.583700.562104.453103.58710HepG2SF3A3
CDIP1ENSG00000089486.121763.715902102.61230-0.253603.021602.40660HepG2SF3B4
CDIP1ENSG00000089486.121437.106201680.96710-0.226102.617701.93290HepG2SLBP
CDIP1ENSG00000089486.121640.429101083.060000.598904.538403.28810HepG2SMNDC1
CDIP1ENSG00000089486.12916.760401265.60200-0.465202.475101.73700HepG2SNRNP70
CDIP1ENSG00000089486.123027.123602194.687600.4638010.8783010.07490HepG2SRSF1
CDIP1ENSG00000089486.122879.275101730.929600.7341023.3581021.78860HepG2SRSF5
CDIP1ENSG00000089486.124081.148901922.388101.0860051.4046049.22340HepG2SRSF7
CDIP1ENSG00000089486.121477.758001785.50870-0.272903.527202.92090HepG2SRSF9
CDIP1ENSG00000089486.124006.042702290.499900.8064033.1149031.79080HepG2SSB
CDIP1ENSG00000089486.12969.581701972.71400-1.0247029.5337027.95670HepG2TAF15
CDIP1ENSG00000089486.121381.392801812.60960-0.391904.422603.37390HepG2TIA1
CDIP1ENSG00000089486.124105.544101081.281201.9247046.4597044.87290HepG2TIAL1
CDIP1ENSG00000089486.12622.542801090.91320-0.8093017.2066015.96110HepG2TRIM56
CDIP1ENSG00000089486.122292.102601712.712600.420305.109303.88340HepG2TUFM
CDIP1ENSG00000089486.121747.883201338.769400.384604.542903.68390HepG2UPF1
CDIP1ENSG00000089486.121528.535601292.530100.241902.672302.08390HepG2UTP3
CDIP1ENSG00000089486.12700.142301043.23980-0.575403.125001.77750HepG2XRCC5
CDIP1ENSG00000089486.121622.140701166.346900.475802.898401.81470HepG2XRCC6
CDIP1ENSG00000089486.129.080100.0000099999.999902.391401.45160K562UCHL5
CDIP1ENSG00000089486.120.000007.08080-99999.999992.172101.41530K562WDR43
CDIP1ENSG00000089486.1214.498402.824602.359702.045101.31610K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDIP1 is not available on ENCORE database.





1 RBPs can affect the splicing of CDIP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDIP1ENSG00000089486.12chr16-456404645641454563696456385245645754564665-0.085000.000080.00163excludedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDIP1 is not avaliable on ENCORE database.