CCNJ

General Information

Gene Name       : CCNJ
Gene ID             : ENSG00000107443.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCNJ)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCNJENSG00000107443.155.094.864.97ENCSR000AEF
HepG2CCNJENSG00000107443.1514.8018.5316.66ENCSR985KAT
K562CCNJENSG00000107443.157.327.167.24ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCNJ is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCNJ RNA is bound by 1 proteins.  







eCLIP assay for CCNJ is not avaliable on ENCORE database.





1 proteins are bound to CCNJ RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr109780994097810003+intron-Proximal5.501446.39134HepG2SF3A3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCNJ is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCNJ is not available on ENCORE database.

  • 89 RBPs can affect the levels of CCNJ.  








The Knockdown/knockout RNA-Seq assay for CCNJ is not available on ENCORE database.





89 RBPs can affect the gene expression of CCNJ :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCNJENSG00000107443.11347.10350503.63820-0.537003.216202.36920HepG2ASCC1
CCNJENSG00000107443.11700.30220934.68390-0.416504.687503.83500HepG2AUH
CCNJENSG00000107443.11291.37210538.61230-0.886406.456205.14550HepG2BCLAF1
CCNJENSG00000107443.11388.43020525.14290-0.435102.648001.44690HepG2BUD13
CCNJENSG00000107443.11350.42760541.90710-0.628903.015402.21390HepG2CNOT7
CCNJENSG00000107443.11618.16550834.78380-0.433402.979602.26930HepG2CPSF6
CCNJENSG00000107443.11300.37260498.41440-0.730609.194607.84200HepG2DDX19B
CCNJENSG00000107443.11802.63690583.095300.460903.029502.37900HepG2DDX3X
CCNJENSG00000107443.11661.35320947.95330-0.519402.321901.42930HepG2DDX59
CCNJENSG00000107443.11338.81370472.30460-0.479202.589201.63880HepG2DHX30
CCNJENSG00000107443.11336.39610489.67530-0.541704.585903.69890HepG2DNAJC21
CCNJENSG00000107443.11383.87920485.40740-0.338502.514201.88660HepG2DNAJC2
CCNJENSG00000107443.11702.54350531.700700.401902.919201.71690HepG2EIF2S2
CCNJENSG00000107443.11474.95790319.381700.572403.373802.38060HepG2EIF3D
CCNJENSG00000107443.11374.97370532.18260-0.505102.685102.05560HepG2EIF4A3
CCNJENSG00000107443.111036.14010518.069000.999909.302708.07990HepG2EIF4B
CCNJENSG00000107443.11512.91490683.29150-0.413802.682401.88000HepG2EIF4G2
CCNJENSG00000107443.111256.387501073.144500.227302.011201.48070HepG2ETF1
CCNJENSG00000107443.11807.05210526.616900.615805.974704.74510HepG2EWSR1
CCNJENSG00000107443.11607.92800946.33390-0.638405.210004.35010HepG2GPKOW
CCNJENSG00000107443.11339.22290549.91070-0.697005.623104.66140HepG2HNRNPC
CCNJENSG00000107443.11483.57860716.46270-0.567106.522405.48540HepG2HNRNPF
CCNJENSG00000107443.11517.03360658.60760-0.349203.146702.43090HepG2HNRNPL
CCNJENSG00000107443.11503.77270903.10020-0.842109.160708.08880HepG2HNRNPLL
CCNJENSG00000107443.11517.07870705.51450-0.448303.668002.84400HepG2IGF2BP1
CCNJENSG00000107443.11780.68900506.277600.624705.117404.22380HepG2IGF2BP2
CCNJENSG00000107443.111056.94760475.017601.153805.325703.98610HepG2IGF2BP3
CCNJENSG00000107443.11396.12810492.63350-0.314502.239401.32010HepG2KIF1C
CCNJENSG00000107443.11550.44980409.762800.425702.496701.42360HepG2LARP7
CCNJENSG00000107443.11596.20550411.035100.536403.287801.42930HepG2LSM11
CCNJENSG00000107443.11834.98760540.028800.628604.728803.92140HepG2MATR3
CCNJENSG00000107443.11626.65340920.95410-0.555503.121702.08730HepG2MTPAP
CCNJENSG00000107443.11720.69760552.767500.382602.144301.58370HepG2NCBP2
CCNJENSG00000107443.11503.49340716.93650-0.509904.960903.94430HepG2NOL12
CCNJENSG00000107443.11600.42800800.74090-0.415302.792502.04040HepG2NSUN2
CCNJENSG00000107443.11321.02990466.15130-0.538102.569101.56700HepG2PCBP2
CCNJENSG00000107443.11244.41260587.72470-1.2658022.6908020.85750HepG2PRPF4
CCNJENSG00000107443.11744.09520490.051900.602503.363502.03080HepG2PRPF6
CCNJENSG00000107443.11298.99670470.23820-0.653303.723902.80350HepG2PRPF8
CCNJENSG00000107443.11587.21790468.401200.326102.368101.85560HepG2PTBP1
CCNJENSG00000107443.11458.37130684.37880-0.578305.101604.32210HepG2PUF60
CCNJENSG00000107443.11501.42940726.49860-0.534907.030406.17420HepG2PUM1
CCNJENSG00000107443.11372.89140548.90950-0.557805.164204.37030HepG2PUS1
CCNJENSG00000107443.11759.91230449.882300.756204.138203.28430HepG2RAVER1
CCNJENSG00000107443.11578.84430713.43490-0.301602.089101.33020HepG2RBM15
CCNJENSG00000107443.111406.81110896.949800.6492011.1935010.30260HepG2RBM22
CCNJENSG00000107443.11621.57880460.396300.433003.083602.37550HepG2RBM25
CCNJENSG00000107443.11818.04410494.114300.727206.530205.00030HepG2RBM27
CCNJENSG00000107443.11726.11150521.284100.478004.662503.99400HepG2NELFE
CCNJENSG00000107443.11621.93670485.508000.357202.706902.09640HepG2RECQL
CCNJENSG00000107443.11402.26890310.778500.372201.871001.35670HepG2RPS19
CCNJENSG00000107443.11204.49150486.46980-1.2503019.7204018.22140HepG2SAFB2
CCNJENSG00000107443.111388.77120656.012301.0819012.0784010.61180HepG2SF3A3
CCNJENSG00000107443.11717.52110893.91470-0.317101.931701.33570HepG2SF3B1
CCNJENSG00000107443.11776.89420487.662900.671708.891407.92320HepG2SF3B4
CCNJENSG00000107443.11397.53370656.21310-0.7231010.145608.93320HepG2SLBP
CCNJENSG00000107443.11616.95650994.62830-0.689004.362703.37190HepG2SNRNP70
CCNJENSG00000107443.11389.74210580.43640-0.574603.074901.36280HepG2SRP68
CCNJENSG00000107443.11489.35280703.88960-0.524505.706304.76430HepG2SRSF7
CCNJENSG00000107443.11695.46070879.58390-0.338903.375202.82140HepG2SSB
CCNJENSG00000107443.111108.81070768.484900.528808.593307.59790HepG2SUCLG1
CCNJENSG00000107443.11303.06040477.92770-0.657205.038303.78810HepG2SUPT6H
CCNJENSG00000107443.11742.65120457.527000.698708.693407.78950HepG2TAF15
CCNJENSG00000107443.11320.64660501.20470-0.644402.298601.32590HepG2TBRG4
CCNJENSG00000107443.11537.80220420.401000.355202.258401.50090HepG2TIA1
CCNJENSG00000107443.11337.29260530.73700-0.654006.048305.36120HepG2TIAL1
CCNJENSG00000107443.11395.07410535.55650-0.438903.774703.13810HepG2TRIM56
CCNJENSG00000107443.11233.81840358.40190-0.616203.317702.48800HepG2UCHL5
CCNJENSG00000107443.11462.75840581.78030-0.330202.512201.84100HepG2UPF1
CCNJENSG00000107443.11875.14760561.689600.639709.671508.66160HepG2UTP3
CCNJENSG00000107443.11934.22760494.717100.917107.895906.19260HepG2XRCC6
CCNJENSG00000107443.11395.80890597.18100-0.593403.439802.63590HepG2XRN2
CCNJENSG00000107443.11538.62800413.150500.382502.778902.20980K562AGGF1
CCNJENSG00000107443.11558.73520429.900800.378102.283501.68870K562AKAP8L
CCNJENSG00000107443.111314.49170981.272200.421704.918903.60970K562CELF1
CCNJENSG00000107443.11325.68320484.73860-0.573704.013402.23450K562DDX19B
CCNJENSG00000107443.11959.03600721.572700.410304.574903.76430K562DDX47
CCNJENSG00000107443.11420.78300322.914100.381802.107901.40560K562EIF3G
CCNJENSG00000107443.11233.75940333.40040-0.512202.843602.01100K562EIF4A3
CCNJENSG00000107443.111024.73940798.223400.360304.087602.95010K562EIF4G2
CCNJENSG00000107443.11474.60070346.722100.452803.304402.65160K562FXR1
CCNJENSG00000107443.11373.74790529.90730-0.503703.419302.53890K562GPKOW
CCNJENSG00000107443.11531.25000724.15980-0.446903.465002.62100K562GRSF1
CCNJENSG00000107443.11140.71050339.90750-1.2724011.5017010.35730K562HNRNPC
CCNJENSG00000107443.11394.11890501.51260-0.347702.428901.66960K562MTPAP
CCNJENSG00000107443.11299.21270462.71600-0.629002.740501.39660K562PCBP1
CCNJENSG00000107443.11661.99850426.616100.633804.661303.58300K562PCBP3
CCNJENSG00000107443.11481.17510327.231900.556104.245703.25040K562POLR2G
CCNJENSG00000107443.11679.72840926.20170-0.446403.719102.46600K562PUM1
CCNJENSG00000107443.11547.38880415.408800.397902.787402.19230K562RBM15
CCNJENSG00000107443.11431.23150291.562800.564602.462701.44560K562SAFB
CCNJENSG00000107443.11173.12590295.64370-0.772003.771901.91900K562SERBP1
CCNJENSG00000107443.11815.30320563.300500.533306.904105.50160K562SRPK2
CCNJENSG00000107443.11232.65100450.96460-0.954804.935503.99410K562SRSF1
CCNJENSG00000107443.11490.28620328.218300.578904.097303.09350K562SYNCRIP
CCNJENSG00000107443.11458.78430596.46080-0.378602.960901.64710K562TROVE2
CCNJENSG00000107443.11501.45460343.630800.545203.368002.13440K562U2AF1
CCNJENSG00000107443.11249.82710354.03990-0.503002.532801.56440K562UCHL5
CCNJENSG00000107443.11349.81730590.87110-0.756209.873108.62200K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCNJ is not available on ENCORE database.





1 RBPs can affect the splicing of CCNJ :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCNJENSG00000107443.11chr10+978100129781022397804109978042199781645797816757-0.453000.004390.05633excludedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCNJ is not avaliable on ENCORE database.