CCDC113

General Information

Gene Name       : CCDC113
Gene ID             : ENSG00000103021.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC113)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC113ENSG00000103021.92.232.022.12ENCSR000AEF
HepG2CCDC113ENSG00000103021.90.270.450.36ENCSR985KAT
K562CCDC113ENSG00000103021.91.501.361.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC113 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on CCDC113 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for CCDC113 is not avaliable on ENCORE database.






NO known proteins are bound to CCDC113 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for CCDC113 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC113 is not available on ENCORE database.

  • 86 RBPs can affect the levels of CCDC113.  








The Knockdown/knockout RNA-Seq assay for CCDC113 is not available on ENCORE database.





86 RBPs can affect the gene expression of CCDC113 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC113ENSG00000103021.566.0306015.239402.115207.180506.29560HepG2ACO1
CCDC113ENSG00000103021.5305.9653012.042204.6671045.9202044.14920HepG2AKAP1
CCDC113ENSG00000103021.535.3989010.072501.813203.041901.95060HepG2AKAP8
CCDC113ENSG00000103021.555.541209.963302.478806.376005.20650HepG2ASCC1
CCDC113ENSG00000103021.517.1893050.61610-1.558103.221702.58210HepG2BOP1
CCDC113ENSG00000103021.571.5768039.470500.858602.012301.34730HepG2CALR
CCDC113ENSG00000103021.551.7931016.285801.669003.305702.46330HepG2CNOT7
CCDC113ENSG00000103021.513.2623046.47190-1.809003.450402.69010HepG2CPSF6
CCDC113ENSG00000103021.5134.2918038.114401.8169010.767809.66210HepG2CELF1
CCDC113ENSG00000103021.583.3118024.747401.751104.039702.51740HepG2DDX27
CCDC113ENSG00000103021.585.1498011.534202.8840010.518109.37140HepG2DDX3X
CCDC113ENSG00000103021.563.7448026.458301.268502.208601.51080HepG2DDX55
CCDC113ENSG00000103021.551.858209.911202.387303.888403.16640HepG2DDX6
CCDC113ENSG00000103021.550.7183024.247801.064602.423801.80700HepG2DNAJC2
CCDC113ENSG00000103021.584.1810027.334401.622705.348603.80540HepG2EFTUD2
CCDC113ENSG00000103021.541.5074010.250002.017603.333202.58250HepG2EIF4B
CCDC113ENSG00000103021.530.8728010.623301.539002.034201.43770HepG2FXR1
CCDC113ENSG00000103021.543.591609.852302.145404.540303.69700HepG2G3BP1
CCDC113ENSG00000103021.582.7992029.017901.512604.286402.52660HepG2HLTF
CCDC113ENSG00000103021.523.8971058.16550-1.283302.947402.20810HepG2HNRNPF
CCDC113ENSG00000103021.543.613909.981802.127304.045003.21410HepG2HNRNPK
CCDC113ENSG00000103021.52.1727050.28150-4.532509.932108.82280HepG2HNRNPLL
CCDC113ENSG00000103021.550.2969018.835101.416903.055802.05840HepG2HNRNPM
CCDC113ENSG00000103021.517.7353057.27820-1.691404.134303.26370HepG2IGF2BP1
CCDC113ENSG00000103021.542.752309.400902.185002.988601.96770HepG2IGF2BP3
CCDC113ENSG00000103021.559.9342015.877001.916304.874203.09300HepG2ILF3
CCDC113ENSG00000103021.542.0178010.073802.060303.358602.24140HepG2KHSRP
CCDC113ENSG00000103021.5132.8425071.474300.894102.994402.12880HepG2LARP4
CCDC113ENSG00000103021.558.1967025.229701.205702.465501.39870HepG2LARP7
CCDC113ENSG00000103021.575.7411010.685802.825308.913007.83250HepG2MATR3
CCDC113ENSG00000103021.575.4631027.857401.437602.867101.79470HepG2METAP2
CCDC113ENSG00000103021.539.6030010.936901.856303.174802.49920HepG2NCBP2
CCDC113ENSG00000103021.510.0360044.57700-2.151103.737702.86960HepG2NSUN2
CCDC113ENSG00000103021.573.4577026.996201.444104.611103.55010HepG2PARN
CCDC113ENSG00000103021.587.8808028.764901.611103.834001.74740HepG2PSIP1
CCDC113ENSG00000103021.538.8581017.905801.117702.024001.54310HepG2PTBP1
CCDC113ENSG00000103021.577.2048041.156400.907502.160701.56510HepG2PUM2
CCDC113ENSG00000103021.571.5200019.382601.883504.460203.69350HepG2QKI
CCDC113ENSG00000103021.556.8056019.488401.543303.755702.77360HepG2RBM15
CCDC113ENSG00000103021.5119.5293032.936201.859508.872008.06570HepG2RBM22
CCDC113ENSG00000103021.52.5176017.59470-2.805002.625001.96570HepG2RBM25
CCDC113ENSG00000103021.567.2356019.923601.754604.984204.29420HepG2NELFE
CCDC113ENSG00000103021.522.7854062.63240-1.458803.425102.67750HepG2RPLP0
CCDC113ENSG00000103021.585.3309025.897001.720205.966705.10400HepG2RPS19
CCDC113ENSG00000103021.564.8429028.056401.208502.507801.74400HepG2RPS2
CCDC113ENSG00000103021.574.6476028.643101.381803.491502.28060HepG2RPS5
CCDC113ENSG00000103021.57.4870024.29080-1.697902.151201.57060HepG2SAFB2
CCDC113ENSG00000103021.54.3961049.77440-3.501108.112306.96300HepG2SF3B1
CCDC113ENSG00000103021.541.7223018.634001.162801.964001.45170HepG2SF3B4
CCDC113ENSG00000103021.569.1368028.322601.287403.761403.03130HepG2SMN1
CCDC113ENSG00000103021.5142.0899037.198601.9334011.4249010.59480HepG2SRFBP1
CCDC113ENSG00000103021.544.3574019.453201.189102.071901.64630HepG2SRSF1
CCDC113ENSG00000103021.59.1744032.29430-1.815603.077102.54270HepG2SSB
CCDC113ENSG00000103021.596.4065043.567101.145803.945803.22650HepG2SUCLG1
CCDC113ENSG00000103021.5197.0834017.494703.4937034.3648032.67150HepG2TAF15
CCDC113ENSG00000103021.52.7625048.98290-4.148209.354508.13710HepG2TARDBP
CCDC113ENSG00000103021.588.6222027.790301.673005.173303.20790HepG2TRA2A
CCDC113ENSG00000103021.571.6886026.745101.422404.674403.98000HepG2TRIM56
CCDC113ENSG00000103021.54.2103025.54410-2.601002.525001.58620HepG2U2AF2
CCDC113ENSG00000103021.575.5944027.215201.473803.566002.11350HepG2XRCC5
CCDC113ENSG00000103021.549.4686015.926801.635003.728503.11860HepG2ZNF622
CCDC113ENSG00000103021.5104.68420250.57770-1.2592010.228409.22710K562AGGF1
CCDC113ENSG00000103021.5192.70840275.30910-0.514602.569501.62770K562AKAP8
CCDC113ENSG00000103021.595.35770260.72820-1.4511012.2995010.78510K562AKAP8L
CCDC113ENSG00000103021.593.65230199.62680-1.091904.579103.85860K562AQR
CCDC113ENSG00000103021.5163.33500273.54900-0.744005.263503.95720K562ATP5C1
CCDC113ENSG00000103021.5178.15350275.65680-0.629802.333701.37350K562CNOT7
CCDC113ENSG00000103021.5230.64690317.07360-0.459102.172901.31050K562CELF1
CCDC113ENSG00000103021.5185.75680246.85140-0.410201.878701.32230K562DDX47
CCDC113ENSG00000103021.5202.12320280.62070-0.473402.384201.57950K562DKC1
CCDC113ENSG00000103021.584.85980140.39900-0.726402.921302.10380K562EIF3G
CCDC113ENSG00000103021.589.81370240.60390-1.421703.397702.00050K562HNRNPA2B1
CCDC113ENSG00000103021.596.25630165.02340-0.777703.660302.63290K562HNRNPU
CCDC113ENSG00000103021.5161.98970276.73040-0.772604.188803.14760K562KIF1C
CCDC113ENSG00000103021.5178.35280106.101800.749202.612201.70990K562KRR1
CCDC113ENSG00000103021.5203.88210141.877200.523002.314701.54170K562MAGOH
CCDC113ENSG00000103021.5157.36010264.87260-0.751202.872001.77250K562MAK16
CCDC113ENSG00000103021.5177.53090310.00340-0.804206.109004.65360K562MBNL1
CCDC113ENSG00000103021.5100.25170217.28710-1.116005.249603.89970K562NAA15
CCDC113ENSG00000103021.565.79530210.62220-1.678603.870902.64490K562PABPN1
CCDC113ENSG00000103021.557.26650126.21350-1.140104.614403.34540K562PCBP2
CCDC113ENSG00000103021.5281.96550152.276300.888704.480503.42320K562PCBP3
CCDC113ENSG00000103021.5264.84950163.286000.697703.766901.91840K562PKM
CCDC113ENSG00000103021.5225.97110116.802300.952005.947004.77690K562POLR2G
CCDC113ENSG00000103021.561.68810258.63750-2.0679017.3986016.07740K562PUS1
CCDC113ENSG00000103021.5107.91230251.94800-1.223307.578106.62680K562RBM15
CCDC113ENSG00000103021.5199.43780132.117100.594002.629901.81180K562RBM22
CCDC113ENSG00000103021.536.6928074.76060-1.026802.732201.41030K562RBM25
CCDC113ENSG00000103021.5243.45420139.047600.808002.469801.44670K562NELFE
CCDC113ENSG00000103021.5320.23830192.058300.737505.676104.39680K562SRPK2
CCDC113ENSG00000103021.5211.41780136.755500.628402.827602.11340K562TARDBP
CCDC113ENSG00000103021.538.6771076.39640-0.982002.520501.48400K562U2AF1
CCDC113ENSG00000103021.5153.77720262.16400-0.769602.841401.52510K562UTP18
CCDC113ENSG00000103021.5117.48370172.39310-0.553202.188001.41030K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC113 is not available on ENCORE database.





1 RBPs can affect the splicing of CCDC113 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXECCDC113ENSG00000103021.5chr16+58286630582867575828790158288063582838395828401958292271582924270.336000.002730.053331includedK562FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC113 is not avaliable on ENCORE database.