C9orf114

General Information

Gene Name       : C9orf114
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C9orf114)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C9orf114 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C9orf114 RNA is bound by 19 proteins.  







eCLIP assay for C9orf114 is not avaliable on ENCORE database.





19 proteins are bound to C9orf114 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9131583265131583347-3'-UTR,intron-Distal5.570689.47550K562UPF1
chr9131583254131583329-3'-UTR,intron-Distal3.866184.36388HepG2EIF3H
chr9131583398131583466-3'-UTR,intron-Distal4.949876.58773K562RBFOX2
chr9131583328131583398-3'-UTR,intron-Distal4.590283.93366K562RBFOX2
chr9131583251131583316-3'-UTR,intron-Distal4.336057.58816HepG2RBFOX2
chr9131583416131583502-3'-UTR,intron-Distal6.9736533.47815HepG2RBFOX2
chr9131584580131584630-3'-UTR,intron-Distal3.291894.44982K562UPF1
chr9131583238131583328-3'-UTR,intron-Distal4.741363.25414K562RBFOX2
chr9131583462131583552-3'-UTR,intron-Distal5.6614612.02344K562UPF1
chr9131584866131584971-3'-UTR,intron-Distal3.395247.38488K562YBX3
chr9131583612131583681-3'-UTR,intron-Distal7.0597631.20306HepG2RBFOX2
chr9131583316131583404-3'-UTR,intron-Distal4.3397910.41658HepG2RBFOX2
chr9131583329131583402-3'-UTR,intron-Distal3.628603.54210HepG2EIF3H
chr9131584368131584410-3'-UTR,intron-Distal,intron-Proximal4.786455.63383K562UPF1
chr9131583176131583224-3'-UTR,intron-Distal4.112125.70786HepG2ZC3H11A
chr9131583710131583809-3'-UTR,intron-Distal4.4078212.75817HepG2RBFOX2
chr9131584561131584626-3'-UTR,intron-Distal4.171203.95192HepG2UPF1
chr9131583545131583612-3'-UTR,intron-Distal6.0455430.69388HepG2RBFOX2
chr9131583502131583545-3'-UTR,intron-Distal5.3420821.34740HepG2RBFOX2
chr9131583535131583661-3'-UTR,intron-Distal5.277747.70517K562RBFOX2
chr9131583429131583498-3'-UTR,intron-Distal5.719476.22843K562DROSHA
chr9131590963131591031-CDS,intron-Distal,intron-Proximal3.086453.13705K562BUD13
chr9131591014131591119-CDS,intron-Distal4.1506814.42334HepG2PPIG
chr9131589440131589504-CDS,intron-Distal,intron-Proximal3.876456.79537K562AQR
chr9131588855131588904-CDS,intron-Distal4.409843.71613K562UCHL5
chr9131586396131586433-CDS,intron-Distal4.435463.49905HepG2PPIG
chr9131587293131587326-CDS,intron-Distal4.261623.38968HepG2BCLAF1
chr9131591013131591140-CDS,intron-Distal,intron-Proximal4.638329.94776K562ZNF622
chr9131591018131591110-CDS,intron-Distal4.460504.03699HepG2FTO
chr9131591014131591115-CDS,intron-Distal6.2317718.53060K562UCHL5
chr9131591037131591133-CDS,intron-Distal3.446656.39282HepG2GRWD1
chr9131591039131591110-CDS,intron-Distal3.335203.65452K562BUD13
chr9131588619131588670-CDS,intron-Distal,intron-Proximal4.4429824.56292HepG2PRPF8
chr9131589317131589375-CDS,intron-Distal4.3722911.01413HepG2PPIG
chr9131589323131589471-CDS,intron-Distal,intron-Proximal4.857375.50941K562PUM1
chr9131589353131589435-CDS,intron-Distal4.583536.26332HepG2GRWD1
chr9131587270131587334-CDS,intron-Distal,intron-Proximal3.721735.62957HepG2BUD13
chr9131586348131586383-CDS,intron-Distal,intron-Proximal3.292203.22545HepG2PPIG
chr9131591389131591445-CDS,intron-Distal,intron-Proximal3.528433.67894HepG2AQR
chr9131591001131591141-CDS,intron-Distal,intron-Proximal3.000704.31444K562GRWD1
chr9131590995131591015-CDS,intron-Distal,intron-Proximal4.556309.10443HepG2PRPF8
chr9131589429131589470-CDS,intron-Distal4.416744.78571K562UCHL5
chr9131588670131588696-CDS,intron-Distal3.065464.73938HepG2PRPF8
chr9131586312131586373-CDS,intron-Distal,intron-Proximal3.228115.31044HepG2PRPF8
chr9131588393131588490-CDS,intron-Distal,intron-Proximal3.618724.71371HepG2GRWD1
chr9131589311131589347-CDS,intron-Distal4.083534.45558HepG2GRWD1
chr9131587258131587327-CDS,intron-Distal4.608968.98325HepG2PPIG
chr9131588605131588681-CDS,intron-Distal,intron-Proximal3.737427.07647K562PRPF8
chr9131591391131591430-CDS,intron-Distal4.507035.29868K562UCHL5
chr9131589309131589317-CDS,intron-Distal,intron-Proximal3.690654.77136HepG2PPIG
chr9131591010131591121-CDS,intron-Distal,intron-Proximal3.976069.93482K562ZNF800
chr9131591903131591987-intron-Distal5.202925.99517HepG2EFTUD2
chr9131590967131590995-intron-Distal,intron-Proximal5.5563010.09256HepG2PRPF8
chr9131590962131591014-intron-Distal,intron-Proximal4.6439313.90015K562AQR
chr9131588533131588616-intron-Distal,intron-Proximal3.367413.63043HepG2GRWD1
chr9131588455131588507-intron-Distal,intron-Proximal3.313484.03693HepG2RBM5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C9orf114 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C9orf114 is not available on ENCORE database.

  • 79 RBPs can affect the levels of C9orf114.  








The Knockdown/knockout RNA-Seq assay for C9orf114 is not available on ENCORE database.





79 RBPs can affect the gene expression of C9orf114 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C9orf114ENSG00000198917.71060.02450883.453900.262802.578501.98830HepG2ACO1
C9orf114ENSG00000198917.71367.452001110.831300.299803.439602.68880HepG2AUH
C9orf114ENSG00000198917.7887.22960640.449100.470102.165401.34000HepG2BCCIP
C9orf114ENSG00000198917.7803.73910556.393100.530502.872901.95510HepG2BCLAF1
C9orf114ENSG00000198917.7819.78820534.989100.615604.479503.73920HepG2BOP1
C9orf114ENSG00000198917.7759.46770512.765500.566604.831003.48990HepG2YBX3
C9orf114ENSG00000198917.71131.40700914.047500.307703.031402.36410HepG2CELF1
C9orf114ENSG00000198917.7556.06950856.73700-0.623604.660103.87680HepG2DDX6
C9orf114ENSG00000198917.7718.10500485.636600.564203.210102.15770HepG2DHX30
C9orf114ENSG00000198917.7745.50580503.519500.566106.508205.46480HepG2DNAJC21
C9orf114ENSG00000198917.71181.14020823.385500.520404.241703.51650HepG2EIF2S1
C9orf114ENSG00000198917.71899.593101275.350700.5747011.5376010.44730HepG2ETF1
C9orf114ENSG00000198917.71073.77070647.278000.730109.228207.83720HepG2FUBP3
C9orf114ENSG00000198917.71328.44340851.691500.641206.016205.05210HepG2G3BP1
C9orf114ENSG00000198917.71283.67820904.397600.505204.296503.17540HepG2G3BP2
C9orf114ENSG00000198917.7703.28260903.23610-0.361003.438602.41270HepG2HNRNPA2B1
C9orf114ENSG00000198917.71450.05230862.804100.748909.587308.35220HepG2HNRNPK
C9orf114ENSG00000198917.7679.97660531.351300.355701.978001.43740HepG2HNRNPLL
C9orf114ENSG00000198917.7720.18590561.689400.358503.178002.53190HepG2HNRNPU
C9orf114ENSG00000198917.7339.85030592.12400-0.801002.719202.02030HepG2RAVER1
C9orf114ENSG00000198917.7812.933601065.96390-0.390903.327602.77420HepG2RBM22
C9orf114ENSG00000198917.7688.38380500.215600.460604.992204.17080HepG2SAFB2
C9orf114ENSG00000198917.7346.15110525.94610-0.603504.162103.31280HepG2SF3B1
C9orf114ENSG00000198917.7801.21140583.346500.457705.887905.00430HepG2SMN1
C9orf114ENSG00000198917.7867.042101203.97890-0.473607.252506.54720HepG2SRFBP1
C9orf114ENSG00000198917.7655.62040938.79710-0.518003.107602.61420HepG2SRSF1
C9orf114ENSG00000198917.71282.26430918.541300.481203.847803.13130HepG2SRSF5
C9orf114ENSG00000198917.7586.98370763.80630-0.379902.972302.40440HepG2SRSF9
C9orf114ENSG00000198917.71214.444501044.627900.217202.037901.48820HepG2SUCLG1
C9orf114ENSG00000198917.71020.57600843.971900.274002.458401.92600HepG2TAF15
C9orf114ENSG00000198917.7895.40380550.662500.701304.694503.99910HepG2TRIM56
C9orf114ENSG00000198917.7691.27080822.98050-0.251602.050501.43400HepG2UPF1
C9orf114ENSG00000198917.7502.40270625.82470-0.316902.563501.91260HepG2ZC3H8
C9orf114ENSG00000198917.7771.73470905.12320-0.230002.071001.57910HepG2ZNF622
C9orf114ENSG00000198917.7970.114401291.03820-0.412303.354001.99090K562ABCF1
C9orf114ENSG00000198917.7748.10460993.44190-0.409204.541203.84620K562AGGF1
C9orf114ENSG00000198917.7773.920901033.71540-0.417603.434102.70450K562AKAP8L
C9orf114ENSG00000198917.71920.901201496.114300.360502.826902.23310K562AQR
C9orf114ENSG00000198917.71811.767102202.64140-0.281802.575201.63450K562CELF1
C9orf114ENSG00000198917.71707.863201350.464900.338604.444403.64440K562DDX47
C9orf114ENSG00000198917.71073.76560769.719400.480203.743602.66890K562EFTUD2
C9orf114ENSG00000198917.71144.51700823.935600.474002.412901.45350K562EIF3D
C9orf114ENSG00000198917.7690.71800413.980100.738409.149907.70640K562EIF3G
C9orf114ENSG00000198917.7310.33000442.88760-0.513103.368501.58510K562FASTKD2
C9orf114ENSG00000198917.7409.99140725.86210-0.824107.937805.87630K562FKBP4
C9orf114ENSG00000198917.7485.49070624.86140-0.364102.066901.32360K562FMR1
C9orf114ENSG00000198917.7260.31180365.99860-0.491602.933801.54820K562FUS
C9orf114ENSG00000198917.71270.78870578.035001.1364025.1618023.45490K562FXR1
C9orf114ENSG00000198917.768.32820236.37080-1.790509.868808.37740K562G3BP2
C9orf114ENSG00000198917.7622.82710835.98490-0.424603.348402.70000K562HNRNPC
C9orf114ENSG00000198917.7989.85410763.376400.374702.285401.44330K562HNRNPM
C9orf114ENSG00000198917.7839.173301097.05130-0.386603.090902.21470K562KIF1C
C9orf114ENSG00000198917.7753.15830505.179500.576105.752804.52650K562MAGOH
C9orf114ENSG00000198917.7843.760901050.13110-0.315702.379601.40820K562MAK16
C9orf114ENSG00000198917.7670.42340504.137200.411203.170602.17920K562MATR3
C9orf114ENSG00000198917.7973.892601144.11950-0.232402.166501.44570K562MTPAP
C9orf114ENSG00000198917.7608.08850861.41830-0.502402.930202.01900K562NAA15
C9orf114ENSG00000198917.7647.01700449.463800.525503.885802.72250K562PCBP2
C9orf114ENSG00000198917.7848.734901269.42630-0.580805.201704.05900K562PCBP3
C9orf114ENSG00000198917.7756.80530973.65580-0.363503.079402.23290K562POLR2G
C9orf114ENSG00000198917.71166.52230749.030700.639006.310605.17840K562PRPF8
C9orf114ENSG00000198917.7918.12810490.822000.9034014.3345012.88530K562PTBP1
C9orf114ENSG00000198917.7717.410301025.20470-0.515002.760802.21810K562PUS1
C9orf114ENSG00000198917.795.85310225.50080-1.234203.277001.71360K562RAVER1
C9orf114ENSG00000198917.7779.90710998.87220-0.357003.219802.58750K562RBM15
C9orf114ENSG00000198917.7652.09610470.577300.470603.525802.57150K562RBM22
C9orf114ENSG00000198917.7516.54390920.39570-0.833403.366901.63250K562RBM39
C9orf114ENSG00000198917.7736.18910495.221900.571902.627601.56550K562NELFE
C9orf114ENSG00000198917.71015.27890762.826500.412302.350001.59960K562RPS19
C9orf114ENSG00000198917.7611.06840355.739900.780403.621402.45830K562RPS3
C9orf114ENSG00000198917.7477.80040245.668400.9596011.274909.48000K562SF3B4
C9orf114ENSG00000198917.7568.88320742.39420-0.384102.571101.35820K562SLBP
C9orf114ENSG00000198917.7254.14550380.13480-0.580903.627901.74760K562SND1
C9orf114ENSG00000198917.7687.82240481.182100.515404.342703.46060K562SRSF1
C9orf114ENSG00000198917.7316.30500427.03070-0.433002.672201.42140K562SSB
C9orf114ENSG00000198917.7806.326101113.69710-0.465903.595402.13550K562STAU1
C9orf114ENSG00000198917.7541.96300939.93820-0.794403.314501.70650K562SUPT6H
C9orf114ENSG00000198917.71331.98090976.653900.447604.969603.86160K562SYNCRIP
C9orf114ENSG00000198917.7804.40640486.960000.724007.440806.21730K562TARDBP
C9orf114ENSG00000198917.7725.29810469.735200.626606.577605.23600K562TIA1
C9orf114ENSG00000198917.7600.22030461.015400.380602.347501.35870K562TRA2A
C9orf114ENSG00000198917.7153.23240236.53940-0.626403.381502.49640K562U2AF2
C9orf114ENSG00000198917.7551.13100767.41460-0.477603.617202.44080K562UCHL5
C9orf114ENSG00000198917.71130.391801347.97420-0.254002.744302.02860K562UPF1
C9orf114ENSG00000198917.7909.088701153.42860-0.343402.926902.02690K562WDR3
C9orf114ENSG00000198917.71142.178701685.60820-0.561505.573004.27710K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C9orf114 is not available on ENCORE database.





9 RBPs can affect the splicing of C9orf114 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC9orf114ENSG00000198917.7chr9-131589310131589470131588818131588908131591013131591139-0.157000.006780.09623excludedK562SRSF1
SEC9orf114ENSG00000198917.7chr9-131586025131586173131581929131585112131586350131586453-0.226000.001580.05250excludedK562PRPF8
SEC9orf114ENSG00000198917.7chr9-131586025131586173131581929131585112131586350131586453-0.394000.000000.00000excludedHepG2U2AF1
SEC9orf114ENSG00000198917.7chr9-131586025131586173131581929131585112131586350131586453-0.194000.000060.02285excludedK562WDR43
SEC9orf114ENSG00000198917.7chr9-131586025131586173131585076131585112131586350131586453-0.175000.000540.00728excludedK562AQR
SEC9orf114ENSG00000198917.7chr9-131586025131586173131581929131585112131586350131586453-0.141000.000500.07577excludedK562EIF4G2
SEC9orf114ENSG00000198917.7chr9-131586025131586173131581929131585112131586350131586453-0.210000.000140.03889excludedK562SAFB
SEC9orf114ENSG00000198917.7chr9-131586025131586173131581929131585112131586350131586453-0.416000.000000.00000excludedK562HNRNPC
A3SSC9orf114ENSG00000198917.7chr9-1315910131315911561315910131315911391315913881315914340.100000.000660.02721longerK562U2AF2
A3SSC9orf114ENSG00000198917.7chr9-1315910131315912031315910131315911391315913881315914340.245000.000000.00000longerK562AQR
A3SSC9orf114ENSG00000198917.7chr9-1315870491315871661315870491315871481315872551315873280.119000.000000.00000longerK562AQR
A3SSC9orf114ENSG00000198917.7chr9-1315872551315874801315872551315873281315883001315885020.120000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C9orf114 is not avaliable on ENCORE database.