ARID3B

General Information

Gene Name       : ARID3B
Gene ID             : ENSG00000179361.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARID3B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARID3BENSG00000179361.1712.6815.4314.05ENCSR000AEF
HepG2ARID3BENSG00000179361.179.276.187.72ENCSR985KAT
K562ARID3BENSG00000179361.1710.718.329.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARID3B is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARID3B RNA is bound by 6 proteins.  







eCLIP assay for ARID3B is not avaliable on ENCORE database.





6 proteins are bound to ARID3B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157488918174889199+3'-UTR6.1473116.48629K562UPF1
chr157488858274888627+3'-UTR3.015503.85107K562UPF1
chr157488967974889713+3'-UTR,intron-Distal4.163895.61622K562UPF1
chr157488927574889363+3'-UTR,intron-Distal,intron-Proximal4.3794610.88945K562UPF1
chr157488915774889181+3'-UTR4.9138513.02031K562UPF1
chr157488848974888536+3'-UTR3.985423.21228K562TIA1
chr157488879274888882+3'-UTR3.997413.02541K562IGF2BP2
chr157488919974889248+3'-UTR4.9830013.37062K562UPF1
chr157488216074882194+3'-UTR,CDS,intron-Proximal5.1205616.54541K562LIN28B
chr157488915874889266+3'-UTR,intron-Proximal4.524844.46951K562FAM120A
chr157489031874890437+3'-UTR3.9138511.25148K562UPF1
chr157486552774865542+CDS,intron-Distal5.2853018.74153K562LIN28B
chr157486550374865527+CDS,intron-Distal4.066453.76295K562LIN28B
chr157486554274865547+CDS,intron-Distal,intron-Proximal5.2476217.71792K562LIN28B
chr157487218174872252+intron-Distal3.728643.08314K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARID3B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARID3B is not available on ENCORE database.

  • 101 RBPs can affect the levels of ARID3B.  








The Knockdown/knockout RNA-Seq assay for ARID3B is not available on ENCORE database.





101 RBPs can affect the gene expression of ARID3B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARID3BENSG00000179361.13788.931901117.45830-0.502204.008502.88760HepG2ABCF1
ARID3BENSG00000179361.13411.30410826.16360-1.0062010.031409.08530HepG2AKAP1
ARID3BENSG00000179361.13486.18480711.54570-0.549506.492405.36530HepG2AKAP8L
ARID3BENSG00000179361.13433.43890683.54090-0.657205.283604.21570HepG2ASCC1
ARID3BENSG00000179361.13599.88350873.93940-0.542903.654602.97780HepG2BOP1
ARID3BENSG00000179361.13514.56350749.75150-0.543105.176304.16210HepG2CALR
ARID3BENSG00000179361.13498.16670649.42390-0.382502.201601.50730HepG2CIRBP
ARID3BENSG00000179361.13551.33870708.04410-0.360903.531002.79540HepG2CKAP4
ARID3BENSG00000179361.13372.62670697.01210-0.903504.897003.87460HepG2CNOT7
ARID3BENSG00000179361.13585.33180802.29350-0.454903.296002.55210HepG2CPSF6
ARID3BENSG00000179361.13232.95610339.23840-0.542203.035201.91130HepG2CSTF2
ARID3BENSG00000179361.13457.56320614.27950-0.424903.459202.75760HepG2CELF1
ARID3BENSG00000179361.13318.46860435.30500-0.450902.688301.78950HepG2DDX24
ARID3BENSG00000179361.13287.81170505.28250-0.812005.430203.69170HepG2DDX27
ARID3BENSG00000179361.131699.794701299.322200.387503.411101.97250HepG2DDX47
ARID3BENSG00000179361.13668.30800993.15360-0.571504.237502.99450HepG2DDX5
ARID3BENSG00000179361.131291.10710679.959800.9250010.455709.33800HepG2DDX6
ARID3BENSG00000179361.13453.44520677.63590-0.579606.481805.52770HepG2DKC1
ARID3BENSG00000179361.13666.08660515.684300.369103.017502.28850HepG2DNAJC21
ARID3BENSG00000179361.13400.59800619.75010-0.629504.753003.57380HepG2EEF2
ARID3BENSG00000179361.13346.56400516.57570-0.575904.009802.67030HepG2EFTUD2
ARID3BENSG00000179361.13932.96060653.460500.513603.792303.10540HepG2EIF2S1
ARID3BENSG00000179361.13363.16740503.05150-0.470102.431401.57900HepG2EIF3D
ARID3BENSG00000179361.13881.156301183.93630-0.426103.207301.32900HepG2EIF3H
ARID3BENSG00000179361.13454.37120722.05320-0.668205.134104.26460HepG2EIF4A3
ARID3BENSG00000179361.13447.62580703.20610-0.651703.948403.13220HepG2EIF4B
ARID3BENSG00000179361.13521.37800651.61800-0.321702.262201.49160HepG2EIF4G1
ARID3BENSG00000179361.13777.264401044.20450-0.425905.359104.57040HepG2ETF1
ARID3BENSG00000179361.13522.42710717.78780-0.458303.019202.08870HepG2G3BP2
ARID3BENSG00000179361.13839.15680668.374200.328203.096302.34030HepG2HNRNPF
ARID3BENSG00000179361.13783.37780601.598400.380804.329603.49970HepG2HNRNPL
ARID3BENSG00000179361.13539.33030867.84430-0.686305.399904.55090HepG2HNRNPLL
ARID3BENSG00000179361.13621.05410778.28690-0.325602.429101.53650HepG2HNRNPM
ARID3BENSG00000179361.13790.223901186.68270-0.586604.486602.92160HepG2HSPD1
ARID3BENSG00000179361.13776.261501192.49340-0.619404.732203.63810HepG2LARP4
ARID3BENSG00000179361.13547.73500729.07200-0.412602.455201.83630HepG2MAGOH
ARID3BENSG00000179361.13238.41200383.13020-0.684404.307802.33860HepG2MARK2
ARID3BENSG00000179361.13329.24820526.45510-0.677102.573001.55620HepG2METAP2
ARID3BENSG00000179361.131217.29670637.234000.933706.804805.37100HepG2PABPC1
ARID3BENSG00000179361.13302.00560416.53110-0.463802.399801.64590HepG2PRPF8
ARID3BENSG00000179361.131171.27040663.172100.8205011.5655010.24450HepG2PUM2
ARID3BENSG00000179361.13578.23530721.44850-0.319202.793302.17520HepG2PUS1
ARID3BENSG00000179361.13851.64410476.128800.838805.022504.08700HepG2RAVER1
ARID3BENSG00000179361.13699.37910872.75480-0.319502.535002.03330HepG2RBM22
ARID3BENSG00000179361.13513.49700692.03000-0.430502.652601.98990HepG2RBM25
ARID3BENSG00000179361.13932.33690719.966100.372802.681902.00670HepG2RPLP0
ARID3BENSG00000179361.13415.20300700.41130-0.754404.070503.09890HepG2RPS3A
ARID3BENSG00000179361.13291.73180412.02680-0.498102.472501.72550HepG2RRP9
ARID3BENSG00000179361.13797.11330512.311300.637707.967606.96010HepG2SAFB2
ARID3BENSG00000179361.13312.74060491.25270-0.651504.920903.67810HepG2SERBP1
ARID3BENSG00000179361.131323.47160985.651100.425102.255801.64580HepG2SF3A3
ARID3BENSG00000179361.131342.42590955.745500.490002.189301.49850HepG2SNRNP70
ARID3BENSG00000179361.134074.68390985.732102.04730112.40350110.38550HepG2SRFBP1
ARID3BENSG00000179361.13619.28400765.11400-0.305102.308701.86630HepG2SRSF1
ARID3BENSG00000179361.13428.01130855.82730-0.9997015.1298014.12450HepG2SSB
ARID3BENSG00000179361.13879.88840702.010400.325703.390302.71510HepG2SUCLG1
ARID3BENSG00000179361.13957.66230761.622100.330302.237701.38810HepG2SUPT6H
ARID3BENSG00000179361.13242.47580537.60460-1.1487010.836709.64420HepG2SUPV3L1
ARID3BENSG00000179361.13513.20810687.77940-0.422403.398802.78730HepG2TAF15
ARID3BENSG00000179361.13776.386801161.45280-0.581102.347501.36430HepG2TBRG4
ARID3BENSG00000179361.13415.50220558.89770-0.427703.116902.59150HepG2TIAL1
ARID3BENSG00000179361.131299.50390632.383401.039003.337902.25250HepG2U2AF2
ARID3BENSG00000179361.13214.16900317.56210-0.568303.125902.32070HepG2UCHL5
ARID3BENSG00000179361.13629.18560874.12560-0.474404.982404.08750HepG2UPF1
ARID3BENSG00000179361.131109.37880843.928100.394504.928604.16870HepG2UTP3
ARID3BENSG00000179361.13379.06780529.21350-0.481402.883302.14320HepG2XRN2
ARID3BENSG00000179361.13449.13770734.68990-0.7100010.995809.80730HepG2ZC3H8
ARID3BENSG00000179361.131932.027301339.663500.528106.188005.37010K562AQR
ARID3BENSG00000179361.131211.466301761.83630-0.540307.399405.80150K562ATP5C1
ARID3BENSG00000179361.13870.42090668.113200.381503.432501.93340K562BCCIP
ARID3BENSG00000179361.13876.879101181.71770-0.430404.330503.35040K562CPSF6
ARID3BENSG00000179361.131389.332902067.64620-0.573608.926007.21830K562CELF1
ARID3BENSG00000179361.13721.73780566.087200.350403.023301.63420K562DDX27
ARID3BENSG00000179361.13988.99940674.166900.552806.290704.64350K562DDX3X
ARID3BENSG00000179361.132527.925901612.033700.6490016.8220015.33690K562DDX47
ARID3BENSG00000179361.13809.73250605.026100.420302.181701.37040K562EFTUD2
ARID3BENSG00000179361.131301.502201044.473200.317303.263902.49350K562EIF2S2
ARID3BENSG00000179361.131570.69780773.814001.021208.862307.02650K562EIF3A
ARID3BENSG00000179361.13645.43850351.886700.8751011.484109.84090K562EIF3G
ARID3BENSG00000179361.131471.662201146.822100.359702.989302.10570K562FIP1L1
ARID3BENSG00000179361.13429.30330311.098100.464503.428601.91540K562FUS
ARID3BENSG00000179361.13731.33420422.240300.792404.428201.72710K562FXR2
ARID3BENSG00000179361.13181.09630376.12730-1.054503.953903.07130K562G3BP2
ARID3BENSG00000179361.131118.94960887.564100.334102.858501.76750K562HNRNPA1
ARID3BENSG00000179361.131219.55990775.645700.652808.366307.37940K562HNRNPC
ARID3BENSG00000179361.13894.76240692.660900.369302.745501.60630K562HNRNPF
ARID3BENSG00000179361.13874.31860597.657900.548703.542302.32600K562IGF2BP2
ARID3BENSG00000179361.13522.68480794.83130-0.604705.017103.02100K562ILF3
ARID3BENSG00000179361.131044.64270786.699000.409002.825101.35510K562LIN28B
ARID3BENSG00000179361.131197.814101366.50990-0.190101.978301.33420K562NSUN2
ARID3BENSG00000179361.131706.008201055.438900.692703.066202.01300K562PABPN1
ARID3BENSG00000179361.13836.16820558.544700.582005.552704.15760K562PCBP2
ARID3BENSG00000179361.132382.824901825.329400.384402.348301.58240K562PCBP3
ARID3BENSG00000179361.131270.651801727.97760-0.443504.992603.14420K562PNPT1
ARID3BENSG00000179361.13976.67090588.766700.730107.149605.94630K562PRPF8
ARID3BENSG00000179361.13764.37570609.983600.325402.318201.70320K562PTBP1
ARID3BENSG00000179361.131508.944301951.55830-0.371104.098302.78020K562PUM1
ARID3BENSG00000179361.13884.08910634.519100.478404.468303.20520K562RCC2
ARID3BENSG00000179361.131088.36060599.534600.860108.577907.12620K562RPS19
ARID3BENSG00000179361.131502.75920708.660401.0843016.8986014.31880K562RPS3
ARID3BENSG00000179361.13853.37480601.506000.504503.922502.63500K562SRFBP1
ARID3BENSG00000179361.131052.97950598.021000.8161012.0192010.54650K562SRSF1
ARID3BENSG00000179361.13925.54190684.023600.436203.541502.32900K562SRSF4
ARID3BENSG00000179361.131134.049201504.61190-0.407903.374501.85030K562SSRP1
ARID3BENSG00000179361.131044.147801376.10350-0.398302.779201.52800K562STAU1
ARID3BENSG00000179361.131102.838501404.32990-0.348703.360902.45690K562SYNCRIP
ARID3BENSG00000179361.13884.29530605.163600.547102.798502.08770K562TARDBP
ARID3BENSG00000179361.13824.52740583.767800.498104.327203.26990K562TIA1
ARID3BENSG00000179361.13799.87100573.021800.481103.795202.48240K562TRA2A
ARID3BENSG00000179361.13928.68420710.637700.386002.904201.93170K562TRIM56
ARID3BENSG00000179361.13867.25290603.141200.523903.548002.38420K562UCHL5
ARID3BENSG00000179361.131041.013801448.94100-0.477008.133706.98130K562UPF1
ARID3BENSG00000179361.131669.329001289.277600.372606.151204.94240K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARID3B is not available on ENCORE database.





1 RBPs can affect the splicing of ARID3B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEARID3BENSG00000179361.13chr15+748654727486554574865202748652747488216074882344-0.195000.000080.00146excludedK562AQR
A3SSARID3BENSG00000179361.13chr15+7488211474882344748821607488234474865472748655450.123000.000000.00001longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARID3B is not avaliable on ENCORE database.