AP3M1

General Information

Gene Name       : AP3M1
Gene ID             : ENSG00000185009.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AP3M1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AP3M1ENSG00000185009.1261.1048.2554.67ENCSR000AEF
HepG2AP3M1ENSG00000185009.1218.6232.7225.67ENCSR985KAT
K562AP3M1ENSG00000185009.1262.7570.6666.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AP3M1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AP3M1 RNA is bound by 13 proteins.  







eCLIP assay for AP3M1 is not avaliable on ENCORE database.





13 proteins are bound to AP3M1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr107588196275882045-3'-UTR,intron-Distal3.155456.82148K562IGF2BP2
chr107588259175882675-3'-UTR,intron-Distal,intron-Proximal3.893528.68495K562IGF2BP1
chr107588249975882545-3'-UTR,intron-Distal3.823266.42586K562TIA1
chr107588169275881760-3'-UTR,intron-Distal3.6156311.33005K562UPF1
chr107588243975882512-3'-UTR,intron-Distal3.339426.89225K562FAM120A
chr107588316575883214-3'-UTR,intron-Distal3.091765.58482K562YBX3
chr107588200575882085-3'-UTR,intron-Distal3.3132312.96529K562TIA1
chr107588202975882150-3'-UTR,intron-Distal4.9607410.21863HepG2PTBP1
chr107588178575881822-3'-UTR,intron-Distal3.406194.76828K562IGF2BP1
chr107588194775881982-3'-UTR,intron-Distal4.238304.97297K562TIA1
chr107588176075881819-3'-UTR,intron-Distal3.504558.13602K562TIA1
chr107588170575881755-3'-UTR,intron-Distal3.158214.88918K562IGF2BP1
chr107588329975883342-3'-UTR,intron-Distal4.487115.76838K562IGF2BP1
chr107588250275882544-3'-UTR,intron-Distal3.329328.77718K562UPF1
chr107588205875882116-3'-UTR,intron-Distal4.1002914.70562K562IGF2BP1
chr107588347475883527-3'-UTR,intron-Distal3.810295.31144HepG2SUB1
chr107588194475881983-3'-UTR,intron-Distal4.200734.24698K562IGF2BP1
chr107588153975881579-3'-UTR,intron-Distal4.113713.76686K562IGF2BP1
chr107588196675882019-3'-UTR,intron-Distal3.408934.93572K562LIN28B
chr107588201275882058-3'-UTR,intron-Distal4.3438215.69329K562IGF2BP1
chr107588230075882355-3'-UTR,intron-Distal3.882693.69113K562LIN28B
chr107588193075881988-3'-UTR,intron-Distal5.8185123.76045K562UPF1
chr107588230075882343-3'-UTR,intron-Distal3.691899.76876K562YBX3
chr107588204575882172-3'-UTR,intron-Distal3.0691822.12531K562PTBP1
chr107588288475882925-3'-UTR,intron-Distal3.393474.01547K562TIA1
chr107588308775883155-3'-UTR,intron-Distal3.975883.63655K562IGF2BP2
chr107588208575882137-3'-UTR,intron-Distal3.919599.82135K562TIA1
chr107588183575881854-3'-UTR,intron-Distal4.335948.51603K562UPF1
chr107591051275910593-5'-UTR,intron-Distal,intron-Proximal3.390318.23377K562DDX3X
chr107589638975896438-CDS,intron-Distal,intron-Proximal3.310966.98725K562YBX3
chr107589390475893922-CDS,intron-Distal3.044886.98097K562YBX3
chr107588589675886045-CDS,intron-Distal,intron-Proximal3.498596.20035HepG2BCLAF1
chr107589804375898096-CDS,intron-Distal5.0866019.94434K562LIN28B
chr107591044475910513-intron-Distal4.030164.49024K562AQR
chr107590641575906483-intron-Distal4.5112810.81726HepG2QKI
chr107590782575907918-intron-Distal4.024604.69074K562PTBP1
chr107590791875907993-intron-Distal4.644334.40618K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AP3M1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AP3M1 is not available on ENCORE database.

  • 79 RBPs can affect the levels of AP3M1.  








The Knockdown/knockout RNA-Seq assay for AP3M1 is not available on ENCORE database.





79 RBPs can affect the gene expression of AP3M1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AP3M1ENSG00000185009.81315.969401107.175600.249102.694602.09390HepG2ACO1
AP3M1ENSG00000185009.8553.99590939.79250-0.762506.814005.47390HepG2BCLAF1
AP3M1ENSG00000185009.81006.009901568.93900-0.641107.975207.02230HepG2BOP1
AP3M1ENSG00000185009.8732.235001057.59240-0.530402.166501.49440HepG2CNOT7
AP3M1ENSG00000185009.8707.027401440.40200-1.0266016.4181014.90990HepG2CPSF6
AP3M1ENSG00000185009.81057.339901429.12170-0.434706.066705.18510HepG2CELF1
AP3M1ENSG00000185009.81352.808401536.73970-0.183901.977301.33440HepG2DAZAP1
AP3M1ENSG00000185009.8229.37500975.74990-2.0888052.6548050.28160HepG2DDX21
AP3M1ENSG00000185009.81197.531601580.09080-0.399902.887502.25020HepG2DDX3X
AP3M1ENSG00000185009.81052.923901357.12220-0.366102.188801.63310HepG2DDX6
AP3M1ENSG00000185009.8924.453601104.22930-0.256402.792302.13790HepG2DNAJC2
AP3M1ENSG00000185009.8686.823201304.84150-0.9259011.9282010.75140HepG2EIF2S1
AP3M1ENSG00000185009.81056.192301452.25970-0.459404.337403.33260HepG2EIF4G2
AP3M1ENSG00000185009.81554.687401883.88800-0.277103.148202.51390HepG2ETF1
AP3M1ENSG00000185009.8708.53000911.48230-0.363402.705201.92740HepG2FUBP3
AP3M1ENSG00000185009.81164.040901632.89180-0.488303.893903.14550HepG2GPKOW
AP3M1ENSG00000185009.8627.62260978.86100-0.641202.817401.69620HepG2GRSF1
AP3M1ENSG00000185009.8893.574101251.08430-0.485504.620203.73970HepG2HNRNPC
AP3M1ENSG00000185009.8752.155701242.81340-0.7245015.4940014.15680HepG2HNRNPU
AP3M1ENSG00000185009.8860.054801012.13270-0.234902.262801.33900HepG2KIF1C
AP3M1ENSG00000185009.81095.201401455.22540-0.410002.708302.05890HepG2MAGOH
AP3M1ENSG00000185009.8870.775001272.52390-0.547305.892704.75400HepG2MSI2
AP3M1ENSG00000185009.8899.437301497.93120-0.735907.885306.84140HepG2NCBP2
AP3M1ENSG00000185009.81295.853301523.82350-0.233802.026201.37110HepG2NOL12
AP3M1ENSG00000185009.8986.112501334.18940-0.436103.232002.45340HepG2PABPC4
AP3M1ENSG00000185009.8822.902501217.01410-0.564603.517302.35080HepG2PCBP2
AP3M1ENSG00000185009.8883.982501108.49170-0.326503.180902.39540HepG2PPIL4
AP3M1ENSG00000185009.81217.080201454.59980-0.257201.899101.39190HepG2PUF60
AP3M1ENSG00000185009.81170.732401433.07780-0.291701.908901.37500HepG2QKI
AP3M1ENSG00000185009.81781.746901174.638900.601003.313202.54470HepG2RAVER1
AP3M1ENSG00000185009.81844.967401574.586100.228502.237901.75850HepG2RBM22
AP3M1ENSG00000185009.8919.911101472.51640-0.6787011.6339010.67180HepG2NELFE
AP3M1ENSG00000185009.81173.197001371.34000-0.225101.953201.42300HepG2RECQL
AP3M1ENSG00000185009.8648.396301149.95430-0.8266010.147508.69880HepG2RPS2
AP3M1ENSG00000185009.81053.57670811.587700.376402.445501.70210HepG2RRP9
AP3M1ENSG00000185009.8763.009901106.78500-0.536608.907307.85270HepG2SAFB2
AP3M1ENSG00000185009.81031.482701377.62230-0.417505.654104.85960HepG2SF3B4
AP3M1ENSG00000185009.81082.936201290.70630-0.253202.988002.32290HepG2SMN1
AP3M1ENSG00000185009.81997.335801778.444800.167401.794501.36460HepG2SRFBP1
AP3M1ENSG00000185009.81753.691801437.886500.286303.319002.81290HepG2SRSF1
AP3M1ENSG00000185009.8937.139301169.75170-0.319903.809503.18290HepG2SRSF9
AP3M1ENSG00000185009.81027.089101292.28170-0.331403.654203.02490HepG2TAF15
AP3M1ENSG00000185009.81235.367501518.62910-0.297802.058101.42040HepG2TARDBP
AP3M1ENSG00000185009.8941.277301207.65550-0.359503.499002.95040HepG2TIAL1
AP3M1ENSG00000185009.8869.023101218.41880-0.487507.535106.68200HepG2TRIM56
AP3M1ENSG00000185009.81090.609701324.34840-0.280103.225502.48290HepG2UPF1
AP3M1ENSG00000185009.81547.410701278.611500.275203.000602.38170HepG2UTP3
AP3M1ENSG00000185009.8765.243301042.02150-0.445402.805902.07650HepG2XRN2
AP3M1ENSG00000185009.81834.057401456.534500.332405.815705.09910HepG2ZNF622
AP3M1ENSG00000185009.84606.892305383.30830-0.224701.862001.32140K562AKAP8L
AP3M1ENSG00000185009.84312.388805237.09490-0.280302.541801.97400K562AQR
AP3M1ENSG00000185009.82678.143103149.29980-0.233802.699701.40720K562BCCIP
AP3M1ENSG00000185009.82312.303003043.24280-0.396307.992506.33280K562BCLAF1
AP3M1ENSG00000185009.82870.815204098.88070-0.513806.106904.79820K562BOP1
AP3M1ENSG00000185009.83726.116005209.19620-0.483402.609901.58420K562CNOT7
AP3M1ENSG00000185009.84673.839005664.26950-0.277304.051602.69530K562CPEB4
AP3M1ENSG00000185009.83034.721804358.30660-0.522208.820107.40280K562CPSF6
AP3M1ENSG00000185009.81842.709102308.75280-0.325304.128902.80200K562CSTF2
AP3M1ENSG00000185009.86134.219508229.13790-0.423907.035305.50290K562CELF1
AP3M1ENSG00000185009.82291.323102761.07670-0.269102.421401.44950K562DDX3X
AP3M1ENSG00000185009.86959.144805861.774900.247504.104403.33170K562DDX47
AP3M1ENSG00000185009.82286.745503032.79700-0.407407.614305.57320K562EIF2S1
AP3M1ENSG00000185009.82072.999702884.64080-0.476705.793704.61240K562EIF4A3
AP3M1ENSG00000185009.82182.451402597.77290-0.251302.612101.50310K562EIF4B
AP3M1ENSG00000185009.85384.543306693.33450-0.313904.740003.52450K562EIF4G2
AP3M1ENSG00000185009.82961.010903758.56590-0.344102.815701.89350K562FTO
AP3M1ENSG00000185009.84514.989203352.210400.429502.974802.23890K562G3BP2
AP3M1ENSG00000185009.83356.032104161.12650-0.310203.067002.23230K562GPKOW
AP3M1ENSG00000185009.82398.873005170.86400-1.1080033.0503030.32790K562GRSF1
AP3M1ENSG00000185009.82501.055602993.13540-0.259102.286401.73620K562HNRNPC
AP3M1ENSG00000185009.82147.113602672.83740-0.316002.941701.76360K562HNRNPF
AP3M1ENSG00000185009.84192.545105297.27360-0.337403.856302.58170K562HNRNPL
AP3M1ENSG00000185009.83252.536803759.27400-0.208902.197301.40230K562HNRNPU
AP3M1ENSG00000185009.82986.307003808.76530-0.351003.811802.81690K562MAGOH
AP3M1ENSG00000185009.82725.407404061.71690-0.575609.318707.64620K562METAP2
AP3M1ENSG00000185009.83586.499004020.75170-0.164902.021301.32500K562MTPAP
AP3M1ENSG00000185009.82482.310703388.97230-0.449205.646904.24120K562PCBP2
AP3M1ENSG00000185009.83594.155604663.34630-0.375703.176702.28480K562PCBP3
AP3M1ENSG00000185009.82714.168403576.91820-0.398205.447604.32440K562POLR2G
AP3M1ENSG00000185009.84411.994405311.42100-0.267702.198501.47050K562PPIG
AP3M1ENSG00000185009.81880.917702683.64940-0.512806.492305.01420K562PSIP1
AP3M1ENSG00000185009.86536.924907611.06370-0.219502.556701.63200K562PUM2
AP3M1ENSG00000185009.87361.084705339.242200.463205.695104.94990K562PUS1
AP3M1ENSG00000185009.82404.167903548.59070-0.561707.720606.22560K562RBM22
AP3M1ENSG00000185009.81993.549803734.24410-0.9055016.3428013.78550K562NELFE
AP3M1ENSG00000185009.83332.942602562.835000.379003.090002.22590K562RPS19
AP3M1ENSG00000185009.83809.384103187.206500.257202.297901.31630K562SAFB
AP3M1ENSG00000185009.84135.015603295.163500.327402.879901.40260K562SDAD1
AP3M1ENSG00000185009.82952.654903486.02990-0.239602.339601.55480K562SF3B4
AP3M1ENSG00000185009.83859.333004516.31300-0.226804.089002.97330K562SRPK2
AP3M1ENSG00000185009.81872.906902436.27810-0.379402.680901.68040K562SUPV3L1
AP3M1ENSG00000185009.82605.702203671.48140-0.494705.615904.58720K562TARDBP
AP3M1ENSG00000185009.81999.342103494.48500-0.8056015.1280011.97490K562TBRG4
AP3M1ENSG00000185009.82858.625603541.51860-0.309003.416802.49240K562TIA1
AP3M1ENSG00000185009.82866.348703474.92460-0.277802.446301.43270K562TRA2A
AP3M1ENSG00000185009.83950.097503356.158100.235002.314701.58190K562U2AF2
AP3M1ENSG00000185009.84863.647604214.867500.206503.355702.43240K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AP3M1 is not available on ENCORE database.





7 RBPs can affect the splicing of AP3M1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAP3M1ENSG00000185009.8chr10-758985637589868975897864758981407591051275910600-0.157000.000130.00396excludedK562SRSF1
SEAP3M1ENSG00000185009.8chr10-758985637589868975897864758981407591051275910600-0.171000.004100.06478excludedHepG2U2AF1
SEAP3M1ENSG00000185009.8chr10-758985637589868975897864758981407591051275910600-0.249000.000090.00183excludedHepG2U2AF2
SEAP3M1ENSG00000185009.8chr10-758937847589395075889664758897507589638975896561-0.078000.000050.00098excludedK562AQR
SEAP3M1ENSG00000185009.8chr10-758985637589868975897864758981407591051275910600-0.140000.000160.00251excludedK562AQR
SEAP3M1ENSG00000185009.8chr10-758985637589868975897864758981407591051275910600-0.140000.000830.03387excludedK562FXR1
SEAP3M1ENSG00000185009.8chr10-7591009275910253758980137589814075910512759108210.071000.003330.09295includedK562HNRNPU
SEAP3M1ENSG00000185009.8chr10-7589856375898689758978647589814075910512759106000.241000.002170.07025includedHepG2HNRNPC
SEAP3M1ENSG00000185009.8chr10-7589856375898689758978647589814075910512759106000.236000.000000.00005includedK562HNRNPC
SEAP3M1ENSG00000185009.8chr10-758858837588611375884137758842827588886575888999-0.068000.000970.01889excludedK562HNRNPC
A5SSAP3M1ENSG00000185009.8chr10-7588588375886113758859057588611375884137758842820.052000.000000.00013longerK562AQR
MXEAP3M1ENSG00000185009.8chr10-7589378475893922758963897589656175889664758897507589786475898140-0.219000.000240.006722includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AP3M1 is not avaliable on ENCORE database.