AP000275.65

General Information

Gene Name       : AP000275.65
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AP000275.65)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AP000275.65 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AP000275.65 RNA is bound by 23 proteins.  







eCLIP assay for AP000275.65 is not avaliable on ENCORE database.





23 proteins are bound to AP000275.65 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr213398214733982166-CDS,intron-Distal,intron-Proximal3.202373.31144K562TRA2A
chr213397651833976576-CDS,intron-Distal,intron-Proximal5.1010029.02939K562ZNF622
chr213397996633979979-CDS,intron-Distal4.4139020.11017K562UCHL5
chr213397995833979970-CDS,intron-Distal,intron-Proximal3.205183.05460HepG2PPIG
chr213398214633982209-CDS,intron-Distal,intron-Proximal3.5699618.23281K562ZNF622
chr213397648133976510-3'-UTR,CDS,intron-Distal4.352638.94008K562ZNF622
chr213397546633975528-3'-UTR,CDS,intron-Distal,intron-Proximal3.271485.09919K562DDX55
chr213397547033975526-3'-UTR,CDS,intron-Distal,intron-Proximal3.4473916.22459K562ZNF622
chr213398001333980026-CDS,intron-Distal3.152517.52395K562GRWD1
chr213397653733976591-CDS,intron-Distal,intron-Proximal4.588136.18872K562TRA2A
chr213397996033980027-CDS,intron-Distal,intron-Proximal3.975157.17294K562TRA2A
chr213397996733980013-CDS,intron-Distal3.7953913.11289K562GRWD1
chr213397457933974649-3'-UTR,CDS,intron-Distal,intron-Proximal3.0623410.94089K562ZNF800
chr213397654533976572-CDS,intron-Distal,intron-Proximal3.9925939.34387K562UCHL5
chr213397658933976594-CDS,intron-Distal,intron-Proximal4.2755428.47992K562UCHL5
chr213397652533976573-CDS,intron-Distal,intron-Proximal3.9876915.51579K562GRWD1
chr213397459633974679-3'-UTR,CDS,intron-Distal,intron-Proximal3.038844.65451K562MTPAP
chr213397464533974677-3'-UTR,CDS,intron-Distal,intron-Proximal3.4531613.16579K562UCHL5
chr213397647233976594-3'-UTR,CDS,intron-Distal,intron-Proximal3.7343516.85915HepG2BCLAF1
chr213397995733980027-CDS,intron-Distal,intron-Proximal3.220875.63844K562SRSF1
chr213398001333980026-CDS,intron-Distal3.3795212.23735K562ZNF622
chr213397644533976512-3'-UTR,CDS,intron-Distal,intron-Proximal4.548635.35719HepG2GRWD1
chr213398214733982173-CDS,intron-Distal,intron-Proximal4.728643.91772K562TARDBP
chr213397645933976541-3'-UTR,CDS,intron-Distal,intron-Proximal3.767033.04123K562LIN28B
chr213397657333976586-CDS,intron-Distal,intron-Proximal3.5136010.26919K562GRWD1
chr213397995833979966-CDS,intron-Distal,intron-Proximal3.9230723.98410K562UCHL5
chr213397453833974629-3'-UTR,CDS,intron-Distal,intron-Proximal4.0949217.04905HepG2PRPF8
chr213398214633982228-CDS,intron-Distal,intron-Proximal3.4727211.78960K562PUM1
chr213397995733979967-CDS,intron-Distal,intron-Proximal3.402276.20035HepG2BCLAF1
chr213397657933976595-CDS,intron-Distal,intron-Proximal3.0037610.66926K562PUM1
chr213397464533974676-3'-UTR,CDS,intron-Distal,intron-Proximal3.295647.64415K562ZNF622
chr213397557733975597-3'-UTR,CDS,intron-Distal,intron-Proximal3.674039.79481K562UCHL5
chr213397554133975593-3'-UTR,CDS,intron-Distal,intron-Proximal4.8757410.68247K562PABPC4
chr213397995833979998-CDS,intron-Distal,intron-Proximal3.3524923.02802K562ZNF622
chr213397651233976577-CDS,intron-Distal,intron-Proximal3.641026.59473HepG2GRWD1
chr213397995733980028-CDS,intron-Distal,intron-Proximal4.050576.18146K562TARDBP
chr213397652133976545-CDS,intron-Distal,intron-Proximal3.6080511.53978K562UCHL5
chr213398214433982223-CDS,intron-Distal,intron-Proximal3.135856.09950HepG2BCLAF1
chr213398214733982181-CDS,intron-Distal,intron-Proximal4.2868220.41228K562UCHL5
chr213397998633980027-CDS,intron-Distal,intron-Proximal3.101678.98636K562PUM1
chr213397550933975590-3'-UTR,CDS,intron-Distal,intron-Proximal3.784715.31167HepG2GRWD1
chr213397657233976589-CDS,intron-Distal,intron-Proximal4.4557939.62421K562UCHL5
chr213397658633976593-CDS,intron-Distal,intron-Proximal3.044547.82632K562GRWD1
chr213398218133982221-CDS,intron-Distal4.3604011.27765K562UCHL5
chr213398001233980026-CDS,intron-Distal3.6889017.08805K562UCHL5
chr213397652133976594-CDS,intron-Distal,intron-Proximal3.316388.05447HepG2PPIG
chr213397657633976593-CDS,intron-Distal,intron-Proximal3.4622219.16702K562ZNF622
chr213397652633976594-CDS,intron-Distal,intron-Proximal3.3584910.35201K562ZNF800
chr213397548233975515-3'-UTR,CDS,intron-Distal,intron-Proximal3.761623.87469HepG2BCLAF1
chr213397549933975575-3'-UTR,CDS,intron-Distal,intron-Proximal4.5715421.96565K562UCHL5
chr213397547033975499-3'-UTR,CDS,intron-Distal,intron-Proximal3.9699413.97212K562UCHL5
chr213397997933980012-CDS,intron-Distal3.9469730.25432K562UCHL5
chr213397995633979981-CDS,intron-Distal,intron-Proximal3.861264.71116K562CPSF6
chr213398459633984708-5'-UTR,intron-Distal,intron-Proximal3.2986310.37505K562DDX3X
chr213398460333984689-5'-UTR,intron-Distal,intron-Proximal3.933715.22400HepG2DDX3X
chr213397412533974265-3'-UTR,CDS,intron-Distal4.0001720.74060K562UCHL5
chr213397420833974260-3'-UTR,CDS,intron-Distal4.512854.91614HepG2GRWD1
chr213397863633978731-intron-Distal3.896103.41738HepG2PTBP1
chr213398437233984415-intron-Distal4.540078.52787K562AQR
chr213397859233978671-intron-Distal4.120923.29248HepG2SUGP2
chr213397415633974277-3'-UTR,CDS,intron-Distal3.5240915.06273K562PUM1
chr213395895933959049-intron-Distal5.5170911.04892K562AGGF1
chr213398460133984653-5'-UTR,intron-Distal,intron-Proximal3.226403.34822K562RBM15
chr213397420033974249-3'-UTR,CDS,intron-Distal3.453346.00087K562YBX3
chr213397413933974283-3'-UTR,CDS,intron-Distal3.1570517.05410K562ZNF622
chr213397405833974108-3'-UTR,intron-Distal,intron-Proximal6.01639400.00000K562PABPC4
chr213397536633975444-3'-UTR,CDS,intron-Distal,intron-Proximal4.530824.58968K562PRPF8
chr213397865033978720-intron-Distal4.169353.42734K562PTBP1
chr213397406233974099-3'-UTR,intron-Distal,intron-Proximal4.483404.77252K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AP000275.65 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AP000275.65 is not available on ENCORE database.

  • 66 RBPs can affect the levels of AP000275.65.  








The Knockdown/knockout RNA-Seq assay for AP000275.65 is not available on ENCORE database.





66 RBPs can affect the gene expression of AP000275.65 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AP000275.65ENSG00000265590.5150.4499048.708401.626904.095103.46560HepG2AKAP1
AP000275.65ENSG00000265590.5442.13130638.87320-0.531101.942501.43360HepG2BOP1
AP000275.65ENSG00000265590.5251.44950586.54500-1.222006.257105.25410HepG2CPSF6
AP000275.65ENSG00000265590.5129.67210197.98060-0.610502.753501.40280HepG2DDX52
AP000275.65ENSG00000265590.579.2576041.459400.934701.936801.35460HepG2EIF4B
AP000275.65ENSG00000265590.5365.85530664.96200-0.862005.046504.19820HepG2GPKOW
AP000275.65ENSG00000265590.5218.68900408.11490-0.900109.238208.02570HepG2HNRNPF
AP000275.65ENSG00000265590.5339.89110634.57940-0.900704.820704.01360HepG2HNRNPLL
AP000275.65ENSG00000265590.5163.71070401.88120-1.295609.159107.91120HepG2IGF2BP1
AP000275.65ENSG00000265590.51.7044044.23850-4.698009.857708.70560HepG2NCBP2
AP000275.65ENSG00000265590.576.1920031.299701.283403.287902.31540HepG2PABPC1
AP000275.65ENSG00000265590.5313.67820199.162100.655201.901401.30570HepG2RAVER1
AP000275.65ENSG00000265590.5419.59770259.350500.694005.060003.94430HepG2RBM15
AP000275.65ENSG00000265590.514.7316050.32150-1.772303.896203.30900HepG2RBM22
AP000275.65ENSG00000265590.56.1923052.25640-3.077105.254304.43900HepG2RECQL
AP000275.65ENSG00000265590.5417.20150628.14720-0.590402.461501.79330HepG2SF3B1
AP000275.65ENSG00000265590.5295.89710202.305600.548502.420801.81370HepG2SMN1
AP000275.65ENSG00000265590.5124.6004054.766001.185905.111304.51970HepG2SRSF1
AP000275.65ENSG00000265590.5246.19990400.94380-0.703604.059703.24170HepG2SRSF7
AP000275.65ENSG00000265590.5328.28510618.33930-0.913405.108004.16740HepG2TARDBP
AP000275.65ENSG00000265590.5184.70480269.18540-0.543401.982601.37540HepG2UPF1
AP000275.65ENSG00000265590.57.4396086.71670-3.543005.644604.17130HepG2UPF2
AP000275.65ENSG00000265590.5706.074601094.21060-0.632007.044506.19940K562AGGF1
AP000275.65ENSG00000265590.5835.549501202.23360-0.524902.861601.85860K562AKAP8
AP000275.65ENSG00000265590.5694.261001138.54170-0.713607.282606.17740K562AKAP8L
AP000275.65ENSG00000265590.5156.15800438.83360-1.4907015.8489014.60090K562AQR
AP000275.65ENSG00000265590.5976.905201194.54000-0.290202.138901.34290K562ATP5C1
AP000275.65ENSG00000265590.5285.36550423.03090-0.568003.572202.03260K562BCCIP
AP000275.65ENSG00000265590.5184.43980408.76190-1.1481013.9492011.76770K562BCLAF1
AP000275.65ENSG00000265590.5912.971501550.11370-0.763704.012002.95890K562BOP1
AP000275.65ENSG00000265590.5286.61620465.59980-0.700005.352703.77700K562CCAR1
AP000275.65ENSG00000265590.5256.17930428.30330-0.741505.867104.03560K562CIRBP
AP000275.65ENSG00000265590.51358.695802527.89280-0.895702.886501.79570K562CNOT7
AP000275.65ENSG00000265590.5986.872101383.50150-0.487407.201005.38400K562CPEB4
AP000275.65ENSG00000265590.5890.544001648.31650-0.888206.089004.92880K562CPSF6
AP000275.65ENSG00000265590.5118.31630310.10670-1.390107.776705.87130K562CSTF2
AP000275.65ENSG00000265590.5652.33730883.46140-0.437504.677903.08240K562DDX21
AP000275.65ENSG00000265590.5211.34450440.98120-1.061109.585707.78880K562EFTUD2
AP000275.65ENSG00000265590.5511.74900835.74090-0.7076010.164608.91860K562EIF2S2
AP000275.65ENSG00000265590.5979.202901676.92760-0.776104.271303.20910K562FMR1
AP000275.65ENSG00000265590.5844.382901421.26260-0.751203.371102.35460K562FTO
AP000275.65ENSG00000265590.5320.19950170.783500.906707.690106.74880K562FXR1
AP000275.65ENSG00000265590.5229.70120442.11000-0.944603.861302.13810K562GEMIN5
AP000275.65ENSG00000265590.5829.996301573.81730-0.923106.546405.32850K562GPKOW
AP000275.65ENSG00000265590.5737.672601113.76780-0.594403.169202.36290K562GRSF1
AP000275.65ENSG00000265590.5290.19630468.08110-0.689702.751501.68150K562HNRNPA1
AP000275.65ENSG00000265590.5389.22760843.35100-1.115502.551401.97550K562HNRNPC
AP000275.65ENSG00000265590.5165.65750399.43450-1.2698010.789208.33850K562IGF2BP2
AP000275.65ENSG00000265590.5281.15970406.35750-0.531403.494102.11630K562IGF2BP3
AP000275.65ENSG00000265590.5281.52360419.98420-0.577104.204103.16440K562MAGOH
AP000275.65ENSG00000265590.5285.83300419.16170-0.552302.212501.39520K562MATR3
AP000275.65ENSG00000265590.5928.674201536.18730-0.726103.999102.93400K562METAP2
AP000275.65ENSG00000265590.5685.94130948.83020-0.468102.662101.79960K562NAA15
AP000275.65ENSG00000265590.5292.26350163.973400.833705.005303.34460K562NCBP2
AP000275.65ENSG00000265590.5263.79680434.43430-0.719704.623502.83130K562NONO
AP000275.65ENSG00000265590.5678.032501727.59970-1.349302.844701.83700K562PABPN1
AP000275.65ENSG00000265590.5263.45010417.80090-0.665304.085101.82970K562PES1
AP000275.65ENSG00000265590.5288.82310512.84350-0.828303.528901.73610K562PKM
AP000275.65ENSG00000265590.5213.88840429.12470-1.004508.285906.98520K562PRPF8
AP000275.65ENSG00000265590.5784.053901129.36470-0.526503.296402.71160K562PUS1
AP000275.65ENSG00000265590.5773.668301100.19380-0.508004.994504.21940K562RBM15
AP000275.65ENSG00000265590.5237.60540381.41500-0.682804.498602.59400K562RBM34
AP000275.65ENSG00000265590.5275.64580437.13430-0.665303.677002.73260K562RPS19
AP000275.65ENSG00000265590.5276.36140377.69710-0.450702.458501.47590K562SRSF5
AP000275.65ENSG00000265590.5168.25100415.52560-1.3043012.136209.97000K562SUPV3L1
AP000275.65ENSG00000265590.5133.62570404.85300-1.599209.559208.12120K562TARDBP
AP000275.65ENSG00000265590.5224.05230390.51410-0.801505.384704.18570K562TIA1
AP000275.65ENSG00000265590.5229.78570439.76260-0.936407.660005.89790K562UCHL5
AP000275.65ENSG00000265590.5909.692601239.11460-0.445901.995201.37840K562UPF1
AP000275.65ENSG00000265590.5736.750001144.81160-0.635903.355901.88470K562UTP18
AP000275.65ENSG00000265590.5742.841901060.29200-0.513302.732001.86060K562WDR3
AP000275.65ENSG00000265590.5296.83720519.94360-0.808703.190001.79330K562WRN
AP000275.65ENSG00000265590.5286.71820447.76960-0.643104.305702.67680K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AP000275.65 is not available on ENCORE database.





11 RBPs can affect the splicing of AP000275.65 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAP000275.65ENSG00000265590.5chr21-339799583398002633976434339765933398214733982315-0.063000.000000.00000excludedK562AQR
SEAP000275.65ENSG00000265590.5chr21-339745813397467733954509339547253397547033975602-0.081000.002560.09333excludedHepG2SF3B4
SEAP000275.65ENSG00000265590.5chr21-339745813397467733954509339547253397547033975602-0.057000.000030.00225excludedK562PTBP1
A3SSAP000275.65ENSG00000265590.5chr21-339821473398231533982147339822643398441433984591-0.051000.000470.07163shorterK562RBM22
A3SSAP000275.65ENSG00000265590.5chr21-339821473398231533982147339822643398441433984456-0.075000.000020.00089shorterHepG2U2AF2
A3SSAP000275.65ENSG00000265590.5chr21-3397458133974775339745813397467733975470339756020.066000.000000.00000longerK562AQR
A3SSAP000275.65ENSG00000265590.5chr21-339745813397477533974581339747183397547033975602-0.141000.017440.08491shorterK562AQR
MXEAP000275.65ENSG00000265590.5chr21-33979958339800263398214733982315339764343397659333984414339844560.127000.000300.013691includedK562XRN2
MXEAP000275.65ENSG00000265590.5chr21-33979958339800263398214733982264339764343397659333984414339844560.064000.000000.000001includedK562AQR
MXEAP000275.65ENSG00000265590.5chr21-33979958339800263398214733982315339764343397659333984414339844560.074000.017090.097021includedK562AQR
MXEAP000275.65ENSG00000265590.5chr21-33975470339755303397643433976593339745813397467733979958339800260.095000.004990.087351includedK562TARDBP
MXEAP000275.65ENSG00000265590.5chr21-33979958339800263398214733982315339764343397659333984414339844560.094000.004000.075721includedK562TARDBP
MXEAP000275.65ENSG00000265590.5chr21-33979958339800263398214733982315339764343397659333984414339845910.107000.002840.069211includedK562EFTUD2
MXEAP000275.65ENSG00000265590.5chr21-3397995833980026339821473398231533976434339765933398441433984456-0.211000.000080.010022includedHepG2DROSHA
MXEAP000275.65ENSG00000265590.5chr21-33979958339800263398214733982315339764343397659333984414339844560.100000.002740.099131includedK562IGF2BP2
MXEAP000275.65ENSG00000265590.5chr21-33979958339800263398214733982315339764343397659333984414339844560.101000.006650.098691includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AP000275.65 is not avaliable on ENCORE database.