AMIGO3

General Information

Gene Name : AMIGO3
Gene ID : ENSG00000176020.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AMIGO3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AMIGO3	ENSG00000176020.8	0.05	0.03	ENCSR000AEF
HepG2	AMIGO3	ENSG00000176020.8	0.11	0.06	ENCSR985KAT
K562	AMIGO3	ENSG00000176020.8	0.12	0.06	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AMIGO3 is not avaliable on ENCORE database.

Proteins bound to RNA

AMIGO3 RNA is bound by 7 proteins.

CanvasJS.com

eCLIP assay for AMIGO3 is not avaliable on ENCORE database.

7 proteins are bound to AMIGO3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	49758709	49758860	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	4.64392	13.19328	K562	UPF1
chr3	49759805	49759875	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.11362	9.08333	HepG2	PRPF8
chr3	49758363	49758428	-	3'-UTR,5'-UTR,intron-Distal	4.63033	9.04751	K562	UPF1
chr3	49760628	49760742	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.98050	7.87148	HepG2	PRPF8
chr3	49756191	49756239	-	3'-UTR,CDS,intron-Distal	4.79708	6.59918	K562	RBM15
chr3	49757707	49757751	-	3'-UTR,5'-UTR,intron-Distal	4.34166	5.99105	K562	UPF1
chr3	49759296	49759367	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.45080	5.95597	K562	EFTUD2
chr3	49758560	49758613	-	3'-UTR,5'-UTR,intron-Distal	3.76566	5.15345	K562	UPF1
chr3	49761182	49761349	-	5'-UTR,intron-Distal,intron-Proximal	3.10565	4.63906	HepG2	NCBP2
chr3	49760837	49760908	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.75289	4.41267	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 14 entries

eCLIP assay for AMIGO3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AMIGO3 is not available on ENCORE database.
74 RBPs can affect the levels of AMIGO3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AMIGO3 is not available on ENCORE database.

74 RBPs can affect the gene expression of AMIGO3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AMIGO3	ENSG00000176020.7	286.44180	38.19010	2.90690	42.52470	40.00150	K562	WDR43
AMIGO3	ENSG00000176020.7	7.71720	170.42490	-4.46490	36.75510	32.35610	K562	CEBPZ
AMIGO3	ENSG00000176020.7	275.99300	42.92210	2.68470	31.18050	29.07810	K562	UPF1
AMIGO3	ENSG00000176020.7	318.60330	73.33390	2.11910	27.47500	25.69880	K562	FXR1
AMIGO3	ENSG00000176020.7	474.58110	103.75480	2.19340	27.46210	25.28550	HepG2	SF3A3
AMIGO3	ENSG00000176020.7	0.00000	143.57510	-99999.99999	28.90730	25.13170	K562	PABPN1
AMIGO3	ENSG00000176020.7	375.23510	81.36570	2.20520	25.50930	23.22080	K562	PRPF8
AMIGO3	ENSG00000176020.7	393.16960	82.88490	2.24590	25.51990	23.11020	K562	RPS19
AMIGO3	ENSG00000176020.7	220.41730	40.91930	2.42930	24.19630	21.87760	K562	SRPK2
AMIGO3	ENSG00000176020.7	1626.92550	239.54920	2.76370	23.13920	21.62690	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 84 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AMIGO3 is not available on ENCORE database.

2 RBPs can affect the splicing of AMIGO3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	AMIGO3	ENSG00000176020.7	chr3	-	49760686	49760901			49760686	49760735	49760824	49760901	0.23400	0.00000	0.00001	included	K562	AQR
A3SS	AMIGO3	ENSG00000176020.7	chr3	-	49760404	49760592			49760404	49760547	49760686	49760901	0.18200	0.00001	0.00007	longer	K562	AQR
MXE	AMIGO3	ENSG00000176020.7	chr3	-	49759663	49759791	49760028	49760187	49759397	49759580	49760404	49760547	-0.43600	0.00008	0.00327	2included	K562	PRPF8
MXE	AMIGO3	ENSG00000176020.7	chr3	-	49760028	49760187	49760686	49760735	49759397	49759580	49760824	49760905	-0.13800	0.00019	0.00209	2included	K562	AQR
SE	AMIGO3	ENSG00000176020.7	chr3	-	49759864	49759943			49759397	49759580	49760028	49760187	-0.27800	0.00044	0.00613	excluded	K562	AQR

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AMIGO3

General Information

Functions

Localization

Domains (AlphaFold: AMIGO3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AMIGO3 is not avaliable on ENCORE database.

7 proteins are bound to AMIGO3 RNA:

eCLIP assay for AMIGO3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AMIGO3 is not available on ENCORE database.

74 RBPs can affect the gene expression of AMIGO3 :

The Knockdown/knockout RNA-Seq assay for AMIGO3 is not available on ENCORE database.

2 RBPs can affect the splicing of AMIGO3 :

The Knockdown/knockout RNA-Seq assay for AMIGO3 is not avaliable on ENCORE database.