AMIGO3

General Information

Gene Name       : AMIGO3
Gene ID             : ENSG00000176020.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AMIGO3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AMIGO3ENSG00000176020.80.000.050.03ENCSR000AEF
HepG2AMIGO3ENSG00000176020.80.000.110.06ENCSR985KAT
K562AMIGO3ENSG00000176020.80.000.120.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AMIGO3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AMIGO3 RNA is bound by 7 proteins.  







eCLIP assay for AMIGO3 is not avaliable on ENCORE database.





7 proteins are bound to AMIGO3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34976118249761349-5'-UTR,intron-Distal,intron-Proximal3.105654.63906HepG2NCBP2
chr34975929649759367-5'-UTR,CDS,intron-Distal,intron-Proximal4.450805.95597K562EFTUD2
chr34975836349758428-3'-UTR,5'-UTR,intron-Distal4.630339.04751K562UPF1
chr34975770749757751-3'-UTR,5'-UTR,intron-Distal4.341665.99105K562UPF1
chr34975975849759853-5'-UTR,CDS,intron-Distal,intron-Proximal3.299473.78727K562PRPF8
chr34975980549759875-5'-UTR,CDS,intron-Distal,intron-Proximal4.113629.08333HepG2PRPF8
chr34975850749758612-3'-UTR,5'-UTR,intron-Distal4.128763.19668HepG2UPF1
chr34975870949758860-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.6439213.19328K562UPF1
chr34976062849760742-5'-UTR,CDS,intron-Distal,intron-Proximal3.980507.87148HepG2PRPF8
chr34975810149758153-3'-UTR,5'-UTR,intron-Distal3.607423.66583K562AKAP1
chr34975856049758613-3'-UTR,5'-UTR,intron-Distal3.765665.15345K562UPF1
chr34976083749760908-5'-UTR,CDS,intron-Distal,intron-Proximal3.752894.41267HepG2PPIG
chr34975619149756239-3'-UTR,CDS,intron-Distal4.797086.59918K562RBM15
chr34975979749759843-intron-Distal,intron-Proximal4.808094.24111K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AMIGO3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AMIGO3 is not available on ENCORE database.

  • 74 RBPs can affect the levels of AMIGO3.  








The Knockdown/knockout RNA-Seq assay for AMIGO3 is not available on ENCORE database.





74 RBPs can affect the gene expression of AMIGO3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AMIGO3ENSG00000176020.751.66390111.18650-1.105803.619902.54740HepG2ABCF1
AMIGO3ENSG00000176020.7108.2487021.774202.313604.855403.98340HepG2DDX21
AMIGO3ENSG00000176020.7133.9608061.092501.132602.129501.32090HepG2EEF2
AMIGO3ENSG00000176020.7104.0416050.941201.030203.378602.15030HepG2EFTUD2
AMIGO3ENSG00000176020.711.5202084.29250-2.871206.676004.94240HepG2EIF2S2
AMIGO3ENSG00000176020.7176.26270113.210500.638602.642102.05160HepG2ETF1
AMIGO3ENSG00000176020.758.2417027.637301.075302.226401.51410HepG2FUBP3
AMIGO3ENSG00000176020.7120.1214044.164801.443406.016104.69220HepG2GEMIN5
AMIGO3ENSG00000176020.7126.6154036.582001.791107.124506.05150HepG2HNRNPC
AMIGO3ENSG00000176020.7116.8740040.101701.543102.308501.41750HepG2IGF2BP3
AMIGO3ENSG00000176020.7264.46990128.183101.044805.869304.65000HepG2LARP4
AMIGO3ENSG00000176020.7145.7571090.790300.682902.019501.32320HepG2MSI2
AMIGO3ENSG00000176020.7145.4752063.848601.187903.547801.91940HepG2NKRF
AMIGO3ENSG00000176020.7102.3678059.283300.788002.584201.84790HepG2NOL12
AMIGO3ENSG00000176020.7159.6066059.518701.423009.026208.03240HepG2PCBP1
AMIGO3ENSG00000176020.7134.8988060.567201.155205.778405.04630HepG2PTBP1
AMIGO3ENSG00000176020.764.01500135.24890-1.079104.879203.77910HepG2RBM15
AMIGO3ENSG00000176020.7225.8418094.622601.255008.694407.89480HepG2RBM22
AMIGO3ENSG00000176020.7141.8237059.527001.252402.740502.06920HepG2RBM25
AMIGO3ENSG00000176020.7118.1139045.834301.365604.654703.34600HepG2RBM27
AMIGO3ENSG00000176020.7141.6407067.401501.071304.622603.95600HepG2NELFE
AMIGO3ENSG00000176020.782.40960135.82770-0.720902.181701.56600HepG2RPLP0
AMIGO3ENSG00000176020.7120.2344042.267001.508105.809004.67410HepG2RPS2
AMIGO3ENSG00000176020.789.9298027.909801.687902.804801.44160HepG2SF1
AMIGO3ENSG00000176020.7474.58110103.754802.1934027.4621025.28550HepG2SF3A3
AMIGO3ENSG00000176020.7165.4964070.891401.223002.112901.49040HepG2SF3B1
AMIGO3ENSG00000176020.7148.2490063.049801.233406.167105.34320HepG2SF3B4
AMIGO3ENSG00000176020.7128.3741027.191502.239005.704403.49190HepG2SFPQ
AMIGO3ENSG00000176020.7197.49500106.872100.885804.967704.35130HepG2SRFBP1
AMIGO3ENSG00000176020.7121.0337055.879701.114905.023404.21970HepG2SRSF5
AMIGO3ENSG00000176020.7145.4471063.548501.194506.327905.45760HepG2SUCLG1
AMIGO3ENSG00000176020.790.2091035.267401.354803.241202.70650HepG2TIAL1
AMIGO3ENSG00000176020.797.2618035.628801.448703.846903.20430HepG2TRIM56
AMIGO3ENSG00000176020.7164.6939095.992700.778702.349201.76610HepG2U2AF1
AMIGO3ENSG00000176020.7141.5683028.995302.287506.308504.74560HepG2U2AF2
AMIGO3ENSG00000176020.7103.07650243.03080-1.237405.362904.61450K562AGGF1
AMIGO3ENSG00000176020.727.95180267.08090-3.2563018.1151015.11480K562AKAP8
AMIGO3ENSG00000176020.71626.92550239.549202.7637023.1392021.62690K562AQR
AMIGO3ENSG00000176020.7194.4904068.652401.502202.755001.88370K562BOP1
AMIGO3ENSG00000176020.77.71720170.42490-4.4649036.7551032.35610K562CEBPZ
AMIGO3ENSG00000176020.7432.11040206.549901.0648013.1752011.86420K562DDX47
AMIGO3ENSG00000176020.7152.2093086.535100.814602.950001.62520K562EEF2
AMIGO3ENSG00000176020.7349.8964083.613802.0650013.4338011.25120K562EFTUD2
AMIGO3ENSG00000176020.7566.09620220.817101.3581023.2222021.46870K562EIF2S2
AMIGO3ENSG00000176020.7247.6836081.229701.608308.419506.63200K562EIF3A
AMIGO3ENSG00000176020.7242.4794089.531601.437309.792707.68400K562EIF3D
AMIGO3ENSG00000176020.7207.6400070.515901.558006.276105.04820K562EIF4A3
AMIGO3ENSG00000176020.7318.6033073.333902.1191027.4750025.69880K562FXR1
AMIGO3ENSG00000176020.7222.4040069.623301.675403.852902.92310K562GPKOW
AMIGO3ENSG00000176020.7322.5411078.363202.0411022.7364021.10590K562HNRNPC
AMIGO3ENSG00000176020.7144.2314069.966301.043604.660903.13070K562HNRNPF
AMIGO3ENSG00000176020.7131.47930268.35750-1.029306.449105.06760K562KIF1C
AMIGO3ENSG00000176020.7243.3420036.430902.7397016.8565015.09340K562MTPAP
AMIGO3ENSG00000176020.749.15870210.72290-2.099802.877801.97490K562NAA15
AMIGO3ENSG00000176020.7152.9625040.480401.9178012.8187011.37550K562NSUN2
AMIGO3ENSG00000176020.7128.3438037.341301.781107.386304.69840K562NUFIP2
AMIGO3ENSG00000176020.70.00000143.57510-99999.9999928.9073025.13170K562PABPN1
AMIGO3ENSG00000176020.7190.5614057.577501.7266011.964909.85550K562PCBP2
AMIGO3ENSG00000176020.712.21610170.77190-3.8052016.8463012.93740K562PPP1R8
AMIGO3ENSG00000176020.7375.2351081.365702.2052025.5093023.22080K562PRPF8
AMIGO3ENSG00000176020.7198.3810062.887101.6573013.7072012.28440K562PTBP1
AMIGO3ENSG00000176020.7477.42600281.149900.763802.625801.83140K562PUF60
AMIGO3ENSG00000176020.741.56120250.75140-2.593007.600006.74570K562PUS1
AMIGO3ENSG00000176020.793.43260244.35860-1.387005.199904.41030K562RBM15
AMIGO3ENSG00000176020.7146.5494060.270201.281806.940105.53810K562RBM22
AMIGO3ENSG00000176020.7113.1283058.775700.944603.358001.78740K562RBM34
AMIGO3ENSG00000176020.7393.1696082.884902.2459025.5199023.11020K562RPS19
AMIGO3ENSG00000176020.7110.036000.0000099999.9999023.5390020.48870K562RPS3
AMIGO3ENSG00000176020.7289.24480143.906601.007102.552101.51430K562SAFB
AMIGO3ENSG00000176020.7177.5516066.332301.420402.275701.40340K562SF3B1
AMIGO3ENSG00000176020.778.0975023.549801.729504.845703.69990K562SF3B4
AMIGO3ENSG00000176020.7151.8920060.752201.321906.598904.81730K562SRFBP1
AMIGO3ENSG00000176020.7220.4173040.919302.4293024.1963021.87760K562SRPK2
AMIGO3ENSG00000176020.7193.5952061.656701.6506011.6608010.21730K562SRSF1
AMIGO3ENSG00000176020.775.795300.0000099999.999905.177203.65760K562SRSF4
AMIGO3ENSG00000176020.7146.25770239.09070-0.709003.455302.02650K562STAU1
AMIGO3ENSG00000176020.75.54990131.98230-4.5717020.9418017.01670K562STIP1
AMIGO3ENSG00000176020.7307.23090161.985300.923407.224905.88250K562SYNCRIP
AMIGO3ENSG00000176020.7183.7869062.386901.558601.905401.31100K562TARDBP
AMIGO3ENSG00000176020.7148.27360290.36680-0.969603.239501.86020K562TROVE2
AMIGO3ENSG00000176020.7275.9930042.922102.6847031.1805029.07810K562UPF1
AMIGO3ENSG00000176020.7209.8034036.727402.514005.811404.51890K562WDR3
AMIGO3ENSG00000176020.7286.4418038.190102.9069042.5247040.00150K562WDR43
AMIGO3ENSG00000176020.762.40060269.91530-2.112905.128003.89480K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AMIGO3 is not available on ENCORE database.





2 RBPs can affect the splicing of AMIGO3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAMIGO3ENSG00000176020.7chr3-497598644975994349759397497595804976002849760187-0.278000.000440.00613excludedK562AQR
A3SSAMIGO3ENSG00000176020.7chr3-4976040449760592497604044976054749760686497609010.182000.000010.00007longerK562AQR
RIAMIGO3ENSG00000176020.7chr3-4976068649760901497606864976073549760824497609010.234000.000000.00001includedK562AQR
MXEAMIGO3ENSG00000176020.7chr3-4976002849760187497606864976073549759397497595804976082449760905-0.138000.000190.002092includedK562AQR
MXEAMIGO3ENSG00000176020.7chr3-4975966349759791497600284976018749759397497595804976040449760547-0.436000.000080.003272includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AMIGO3 is not avaliable on ENCORE database.