ZRANB1

General Information

Gene Name       : ZRANB1
Gene ID             : ENSG00000019995.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZRANB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZRANB1ENSG00000019995.66.385.505.94ENCSR000AEF
HepG2ZRANB1ENSG00000019995.66.8110.528.66ENCSR985KAT
K562ZRANB1ENSG00000019995.60.320.400.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZRANB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZRANB1 RNA is bound by 15 proteins.  







eCLIP assay for ZRANB1 is not avaliable on ENCORE database.





15 proteins are bound to ZRANB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10126673571126673649+3'-UTR3.206113.55800HepG2BCLAF1
chr10126673485126673640+3'-UTR,CDS4.643874.56100HepG2FXR2
chr10126630871126631037+5'-UTR,intron-Distal,intron-Proximal3.323633.68839K562KHSRP
chr10126631013126631074+5'-UTR,CDS,intron-Proximal3.227575.97243HepG2U2AF2
chr10126631760126631801+CDS4.372823.38968HepG2BCLAF1
chr10126631616126631712+CDS3.752666.81385HepG2BCLAF1
chr10126631317126631413+CDS3.215075.40132HepG2BCLAF1
chr10126671859126671912+CDS,intron-Proximal5.165443.70131HepG2PRPF8
chr10126655199126655338+CDS3.516385.52031HepG2GRWD1
chr10126631852126631960+CDS,intron-Proximal3.059666.92889K562KHSRP
chr10126673316126673401+CDS,intron-Proximal3.443635.36861HepG2U2AF2
chr10126631753126631806+CDS4.617855.51215K562RBM15
chr10126631843126631963+CDS,intron-Proximal4.625616.81564HepG2PRPF8
chr10126657214126657272+intron-Distal4.313893.86368HepG2HNRNPM
chr10126636284126636398+intron-Distal4.8465311.02443K562PTBP1
chr10126637268126637357+intron-Distal3.163293.35585HepG2QKI
chr10126637297126637358+intron-Distal3.717193.95921HepG2U2AF2
chr10126642127126642331+intron-Distal3.716165.13070HepG2HNRNPM
chr10126632167126632261+intron-Distal3.484323.90146K562KHSRP
chr10126636398126636472+intron-Distal4.213096.85458K562PTBP1
chr10126636389126636475+intron-Distal3.422343.30286HepG2PTBP1
chr10126657132126657214+intron-Distal4.788134.64592HepG2HNRNPM
chr10126635192126635291+intron-Distal3.459328.97106K562KHSRP
chr10126657552126657582+intron-Distal3.897453.07980HepG2HNRNPM
chr10126636277126636323+intron-Distal4.757986.75776K562MATR3
chr10126636323126636393+intron-Distal4.616085.90588K562MATR3
chr10126637538126637610+intron-Distal3.394794.05508K562U2AF1
chr10126639263126639389+intron-Distal4.690355.78279HepG2ILF3
chr10126636228126636277+intron-Distal3.209553.18966K562MATR3
chr10126663941126664047+intron-Distal3.002264.38902HepG2HNRNPL
chr10126636300126636389+intron-Distal4.565044.07628HepG2PTBP1
chr10126631950126631991+intron-Distal,intron-Proximal3.526966.99379K562TIA1
chr10126631932126631950+intron-Proximal4.033187.00531K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZRANB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZRANB1 is not available on ENCORE database.

  • 75 RBPs can affect the levels of ZRANB1.  








The Knockdown/knockout RNA-Seq assay for ZRANB1 is not available on ENCORE database.





75 RBPs can affect the gene expression of ZRANB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZRANB1ENSG00000019995.6581.96640838.77320-0.527305.823605.00510HepG2ACO1
ZRANB1ENSG00000019995.6946.609201583.39020-0.742207.323906.50330HepG2AKAP1
ZRANB1ENSG00000019995.6500.03390842.79250-0.7532012.4131010.94560HepG2AKAP8L
ZRANB1ENSG00000019995.61003.352801320.99940-0.396802.245901.37620HepG2CCAR1
ZRANB1ENSG00000019995.6647.26280838.68530-0.373804.197603.41100HepG2CKAP4
ZRANB1ENSG00000019995.6782.577401244.56190-0.669304.245603.29220HepG2CNOT7
ZRANB1ENSG00000019995.6589.53880775.78840-0.396103.009202.14230HepG2DDX19B
ZRANB1ENSG00000019995.6588.22290761.65540-0.372803.017801.81220HepG2DDX1
ZRANB1ENSG00000019995.61005.113901516.76420-0.593605.632004.76890HepG2DDX3X
ZRANB1ENSG00000019995.6533.57000713.03600-0.418302.654701.32570HepG2DDX52
ZRANB1ENSG00000019995.6400.85640676.81230-0.755705.411904.37540HepG2DDX55
ZRANB1ENSG00000019995.6502.23250746.84380-0.572506.592405.54210HepG2DNAJC21
ZRANB1ENSG00000019995.6574.77280740.26130-0.365003.822103.08020HepG2DNAJC2
ZRANB1ENSG00000019995.6610.99650850.84480-0.477702.844101.91130HepG2EEF2
ZRANB1ENSG00000019995.6749.903401252.53970-0.740108.023207.05040HepG2EIF2S1
ZRANB1ENSG00000019995.6907.214201384.19930-0.609505.118604.25000HepG2EIF4A3
ZRANB1ENSG00000019995.61519.210201068.681500.507403.113802.25140HepG2EIF4G2
ZRANB1ENSG00000019995.61627.633501313.164100.309603.580002.90960HepG2ETF1
ZRANB1ENSG00000019995.6437.88330617.24560-0.495303.592202.24270HepG2FAM120A
ZRANB1ENSG00000019995.6872.686301396.61220-0.678407.264606.18080HepG2FXR1
ZRANB1ENSG00000019995.6908.662901295.55570-0.511804.049303.25320HepG2G3BP1
ZRANB1ENSG00000019995.6429.17830615.04750-0.519102.080201.30740HepG2GEMIN5
ZRANB1ENSG00000019995.6549.81900785.46460-0.514603.452102.30810HepG2GNB2L1
ZRANB1ENSG00000019995.61360.548701076.981400.337102.050701.49420HepG2GPKOW
ZRANB1ENSG00000019995.6729.817001152.05560-0.658604.544103.12820HepG2GRSF1
ZRANB1ENSG00000019995.61105.55120875.574600.336403.985203.14060HepG2HNRNPF
ZRANB1ENSG00000019995.61025.941101311.88370-0.354702.597801.91930HepG2HNRNPK
ZRANB1ENSG00000019995.6852.190701030.10140-0.273502.945502.25170HepG2HNRNPL
ZRANB1ENSG00000019995.6670.40910833.14330-0.313502.903802.28400HepG2HNRNPU
ZRANB1ENSG00000019995.61100.08580862.198400.351403.326102.53830HepG2IGF2BP1
ZRANB1ENSG00000019995.6648.27670851.02760-0.392604.937503.98010HepG2ILF2
ZRANB1ENSG00000019995.6712.524401213.26560-0.767905.969403.96330HepG2ILF3
ZRANB1ENSG00000019995.6538.71880766.80260-0.509306.774005.22120HepG2KIF1C
ZRANB1ENSG00000019995.6997.778701394.55070-0.483003.333602.42080HepG2LARP4
ZRANB1ENSG00000019995.6537.55670808.03720-0.588004.906503.28080HepG2LIN28B
ZRANB1ENSG00000019995.61111.808501397.09980-0.329502.071301.50010HepG2MAGOH
ZRANB1ENSG00000019995.6780.306401404.91710-0.848409.417808.31150HepG2MATR3
ZRANB1ENSG00000019995.6716.97100965.31540-0.429102.803601.98980HepG2MSI2
ZRANB1ENSG00000019995.61043.536701438.00900-0.462603.511702.80220HepG2NCBP2
ZRANB1ENSG00000019995.61422.21520911.335100.642007.204306.03310HepG2NSUN2
ZRANB1ENSG00000019995.61089.782201276.15030-0.227802.105101.56390HepG2PCBP1
ZRANB1ENSG00000019995.61166.13630832.028600.486907.015905.84910HepG2PRPF4
ZRANB1ENSG00000019995.6675.16960978.85210-0.535802.968501.71110HepG2PRPF6
ZRANB1ENSG00000019995.6972.241301298.52740-0.417505.481504.76610HepG2PTBP1
ZRANB1ENSG00000019995.6921.465501136.25940-0.302303.839903.16590HepG2PUM1
ZRANB1ENSG00000019995.61350.44550898.632800.587503.052902.31470HepG2RAVER1
ZRANB1ENSG00000019995.6970.749801276.34510-0.394803.709002.93560HepG2RBM25
ZRANB1ENSG00000019995.6556.37300753.37000-0.437302.343901.37150HepG2RCC2
ZRANB1ENSG00000019995.61048.549901445.13900-0.462806.932806.14470HepG2NELFE
ZRANB1ENSG00000019995.61713.00770943.099000.8610010.881809.68090HepG2RPLP0
ZRANB1ENSG00000019995.6483.09410672.08050-0.476302.839002.21720HepG2RPS19
ZRANB1ENSG00000019995.6941.461201249.48940-0.408402.264401.53910HepG2RPS3A
ZRANB1ENSG00000019995.61793.935701259.047700.510703.389602.64040HepG2SF3A3
ZRANB1ENSG00000019995.62017.944501017.297000.9880018.2260016.58320HepG2SF3B1
ZRANB1ENSG00000019995.6688.15050865.23330-0.330403.571802.85670HepG2SMN1
ZRANB1ENSG00000019995.6644.87710915.75420-0.505903.043502.03530HepG2SMNDC1
ZRANB1ENSG00000019995.61804.050401239.649800.5412011.5693010.73450HepG2SRFBP1
ZRANB1ENSG00000019995.6953.655201411.13070-0.5653010.280109.49670HepG2SRSF1
ZRANB1ENSG00000019995.61061.54400860.197900.303303.238902.49230HepG2SRSF7
ZRANB1ENSG00000019995.61393.997001076.302700.373005.169304.51160HepG2SSB
ZRANB1ENSG00000019995.6945.989101201.93320-0.345504.377303.62940HepG2SUCLG1
ZRANB1ENSG00000019995.6478.87220809.53900-0.757509.996809.14940HepG2TIAL1
ZRANB1ENSG00000019995.6663.46650816.79220-0.299902.724102.16290HepG2TRIM56
ZRANB1ENSG00000019995.61341.161501020.152500.394603.288102.60840HepG2U2AF1
ZRANB1ENSG00000019995.6515.962201078.01620-1.0630025.8326024.28490HepG2UTP3
ZRANB1ENSG00000019995.61028.00120821.084800.324103.701302.94360HepG2ZC3H8
ZRANB1ENSG00000019995.6128.34040203.47790-0.664901.957001.46450K562AGGF1
ZRANB1ENSG00000019995.6117.68770211.73650-0.847303.209202.50490K562AKAP8L
ZRANB1ENSG00000019995.6126.08340222.17860-0.817302.689801.79030K562ATP5C1
ZRANB1ENSG00000019995.6152.7213097.725900.644002.402701.66710K562CPSF6
ZRANB1ENSG00000019995.6116.86310227.79010-0.962904.003402.92410K562DKC1
ZRANB1ENSG00000019995.6136.38580251.69740-0.884003.499402.45870K562MBNL1
ZRANB1ENSG00000019995.6114.71820204.58940-0.834603.134902.50950K562RBM15
ZRANB1ENSG00000019995.629.3849061.34730-1.061902.280401.30490K562SAFB
ZRANB1ENSG00000019995.6160.6141097.535600.719502.721401.37590K562SSRP1
ZRANB1ENSG00000019995.6107.9489067.120900.685402.112601.41170K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZRANB1 is not available on ENCORE database.





3 RBPs can affect the splicing of ZRANB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZRANB1ENSG00000019995.6chr10+1266583471266584401266551621266553501266605331266606870.052000.001660.08698includedHepG2RBM22
SEZRANB1ENSG00000019995.6chr10+1266508551266509771266306911266318761266551621266553500.143000.000200.05068includedHepG2ILF3
SEZRANB1ENSG00000019995.6chr10+1266697931266698971266627681266629671266702771266703980.072000.000220.05302includedHepG2DKC1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZRANB1 is not avaliable on ENCORE database.