ZNF593

General Information

Gene Name       : ZNF593
Gene ID             : ENSG00000142684.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF593)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF593ENSG00000142684.81.7610.266.01ENCSR000AEF
HepG2ZNF593ENSG00000142684.841.8915.4528.67ENCSR985KAT
K562ZNF593ENSG00000142684.842.4725.0033.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZNF593Ribo-STAMP-293TshRNAZNF593-BGRSLV08-35,ZNF593-BGRSLV08-36NT-BGRSLV08-1,NT-BGRSLV08-2,SubmittedENCORE2
ZNF593Ribo-STAMP-293TshRNABGRSLV08-37,BGRSLV08-38BGRSLV08-1,BGRSLV08-2NotSatisfiedENCORE2
ZNF593Ribo-STAMP-293TshRNAZNF593-BGRSDLV04-65,ZNF593-BGRSDLV04-66NT-BGRSDLV04-1,NT-BGRSDLV04-2,SubmittedENCORE2
ZNF593Ribo-STAMP-293TshRNABGRSDLV04-67dox,BGRSDLV04-68doxBGRSDLV04-1,BGRSDLV04-2SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF593 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF593 RNA is bound by 6 proteins.  







eCLIP assay for ZNF593 is not avaliable on ENCORE database.





6 proteins are bound to ZNF593 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12649712926497214+3'-UTR,CDS4.592759.01592K562PABPC4
chr12649721526497309+3'-UTR3.714225.48721HepG2LARP4
chr12649722426497340+3'-UTR4.100886.15559K562PABPC4
chr12649642426496524+5'-UTR,CDS5.675906.75419HepG2DDX3X
chr12649642826496577+5'-UTR,CDS5.1974229.01482K562DDX3X
chr12649656226496611+CDS5.4425413.44647K562YBX3
chr12649701026497104+CDS,intron-Proximal4.849344.32014K562XRN2
chr12649700626497165+CDS,intron-Proximal3.309435.85200K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF593 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF593 is not available on ENCORE database.

  • 88 RBPs can affect the levels of ZNF593.  








The Knockdown/knockout RNA-Seq assay for ZNF593 is not available on ENCORE database.





88 RBPs can affect the gene expression of ZNF593 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF593ENSG00000142684.7258.65720164.037600.656902.269601.41150HepG2ABCF1
ZNF593ENSG00000142684.7224.67410153.005400.554202.900502.28040HepG2ACO1
ZNF593ENSG00000142684.7381.94650162.289601.234709.059508.15870HepG2AKAP1
ZNF593ENSG00000142684.7302.58690157.935900.937906.453605.58370HepG2BOP1
ZNF593ENSG00000142684.7230.85760152.926600.594103.351302.63210HepG2CKAP4
ZNF593ENSG00000142684.7224.61880134.965000.734802.694101.60440HepG2CPSF7
ZNF593ENSG00000142684.7177.95250113.302300.651203.319702.62850HepG2CELF1
ZNF593ENSG00000142684.7231.44250155.433700.574302.220001.65380HepG2DDX3X
ZNF593ENSG00000142684.7233.84700133.585300.807703.733803.02570HepG2DDX6
ZNF593ENSG00000142684.7117.7982050.515701.221406.102205.18990HepG2DNAJC2
ZNF593ENSG00000142684.7135.0655062.354601.115003.312602.31120HepG2EEF2
ZNF593ENSG00000142684.7199.01360124.344100.678402.587601.46090HepG2EIF2S2
ZNF593ENSG00000142684.7205.29860286.27370-0.479702.393001.82620HepG2ETF1
ZNF593ENSG00000142684.7256.86050149.473200.781004.580403.51020HepG2EWSR1
ZNF593ENSG00000142684.784.81320168.90000-0.993803.266302.41690HepG2FUBP3
ZNF593ENSG00000142684.7152.5629084.235700.856803.256701.77380HepG2HNRNPA0
ZNF593ENSG00000142684.7180.57470110.919400.703003.923203.13180HepG2HNRNPL
ZNF593ENSG00000142684.7179.09500114.194900.649102.295801.43090HepG2HNRNPM
ZNF593ENSG00000142684.7313.33530212.517000.560002.066901.35760HepG2LARP4
ZNF593ENSG00000142684.7212.10040143.230700.566302.093501.52000HepG2MAGOH
ZNF593ENSG00000142684.7488.87990144.017101.7631019.8393018.27510HepG2MATR3
ZNF593ENSG00000142684.7229.54680147.397100.639002.585001.97110HepG2NCBP2
ZNF593ENSG00000142684.7178.73890120.760600.565602.642001.89690HepG2NOL12
ZNF593ENSG00000142684.785.47910139.07520-0.702202.139401.47870HepG2NSUN2
ZNF593ENSG00000142684.7196.11870119.947800.709203.423402.76410HepG2PCBP1
ZNF593ENSG00000142684.793.3087050.715800.879502.861002.11370HepG2PPIL4
ZNF593ENSG00000142684.7274.14730122.399901.1632012.3015011.23970HepG2PUM1
ZNF593ENSG00000142684.7184.58430122.301200.593702.704202.04110HepG2PUM2
ZNF593ENSG00000142684.7354.08590239.265900.565403.446902.88660HepG2RBM22
ZNF593ENSG00000142684.7165.3491076.547101.111004.314703.05980HepG2RBM27
ZNF593ENSG00000142684.7125.4198062.160301.012602.799201.73280HepG2RCC2
ZNF593ENSG00000142684.7153.7736072.064701.093304.070502.75660HepG2RPS5
ZNF593ENSG00000142684.7105.7705050.638601.062504.151003.38950HepG2SAFB2
ZNF593ENSG00000142684.7278.94120142.304800.970904.392803.53300HepG2SF3A3
ZNF593ENSG00000142684.7106.6174059.055800.852203.054402.38300HepG2SMN1
ZNF593ENSG00000142684.7133.6672057.195601.224605.049603.72580HepG2SMNDC1
ZNF593ENSG00000142684.7182.26210113.849600.678801.996201.45340HepG2SRSF5
ZNF593ENSG00000142684.7148.05980234.60680-0.664103.970103.37980HepG2SSB
ZNF593ENSG00000142684.7144.7809086.271800.746802.585501.34500HepG2SSRP1
ZNF593ENSG00000142684.7148.6424087.028400.772202.988201.84010HepG2STIP1
ZNF593ENSG00000142684.7245.34200129.462900.922207.209406.28550HepG2SUCLG1
ZNF593ENSG00000142684.756.48890108.96220-0.947802.863802.17690HepG2SUPV3L1
ZNF593ENSG00000142684.758.48410119.17630-1.027002.529101.99010HepG2TAF15
ZNF593ENSG00000142684.7133.9413055.744301.264606.681805.87290HepG2TRIM56
ZNF593ENSG00000142684.7235.81690141.607000.735701.831501.30950HepG2U2AF1
ZNF593ENSG00000142684.7209.32570119.262400.811503.334002.41600HepG2UBE2L3
ZNF593ENSG00000142684.7149.9110064.359401.219805.853304.74020HepG2UCHL5
ZNF593ENSG00000142684.769.10070126.20310-0.869003.599702.81900HepG2UPF1
ZNF593ENSG00000142684.7407.82600121.843301.7428012.6564011.51600HepG2UTP3
ZNF593ENSG00000142684.7192.49190138.798500.471702.076701.58390HepG2ZNF622
ZNF593ENSG00000142684.7320.09910185.021100.790705.013403.36440K562AARS
ZNF593ENSG00000142684.7328.42260226.951600.533103.231202.62650K562AGGF1
ZNF593ENSG00000142684.7232.69930157.114700.566503.040401.45770K562AKAP1
ZNF593ENSG00000142684.7351.68230236.150700.574503.355002.63490K562AKAP8L
ZNF593ENSG00000142684.7765.32090431.592300.826309.146906.81100K562APOBEC3C
ZNF593ENSG00000142684.7378.91180247.773800.612704.639403.42050K562ATP5C1
ZNF593ENSG00000142684.7268.14090177.295000.596703.213502.18010K562BCLAF1
ZNF593ENSG00000142684.7269.21230144.259300.900006.276104.51880K562CCAR1
ZNF593ENSG00000142684.7196.11380313.81980-0.678204.228002.35280K562CEBPZ
ZNF593ENSG00000142684.7439.42900601.58470-0.453102.233401.35750K562CELF1
ZNF593ENSG00000142684.7266.91900155.399700.780304.690602.96000K562DDX27
ZNF593ENSG00000142684.71011.62750417.191101.2778033.6012031.59480K562DDX47
ZNF593ENSG00000142684.7233.19500161.373300.531002.578801.33130K562DDX6
ZNF593ENSG00000142684.7361.83710146.731201.302105.660704.18680K562EIF3A
ZNF593ENSG00000142684.7205.1683074.314001.4650010.654109.08750K562EIF3G
ZNF593ENSG00000142684.7350.76860260.576400.428702.109301.36500K562FIP1L1
ZNF593ENSG00000142684.7115.82570189.12190-0.707402.917102.03840K562FMR1
ZNF593ENSG00000142684.7101.73240160.30230-0.656002.324101.49010K562FTO
ZNF593ENSG00000142684.7446.73060172.927001.3691012.2182011.03940K562FXR1
ZNF593ENSG00000142684.78.8758045.06490-2.344105.196104.15770K562G3BP2
ZNF593ENSG00000142684.71015.52960491.767301.046103.101002.30300K562GRSF1
ZNF593ENSG00000142684.7344.59270214.323600.685003.845702.73720K562HNRNPM
ZNF593ENSG00000142684.7493.00820365.147100.433003.146502.19640K562HNRNPU
ZNF593ENSG00000142684.785.11890151.53090-0.832102.735001.80810K562KRR1
ZNF593ENSG00000142684.7284.3169096.458501.5594015.9475013.79240K562MAGOH
ZNF593ENSG00000142684.7202.2039096.272201.070507.017905.45780K562MATR3
ZNF593ENSG00000142684.7396.41810280.761400.497602.260101.45120K562MBNL1
ZNF593ENSG00000142684.7151.4762085.835500.819302.704501.73650K562PCBP2
ZNF593ENSG00000142684.7583.13080295.799700.9791010.874308.93750K562PPIG
ZNF593ENSG00000142684.7389.81300155.313501.327505.556704.49270K562PRPF8
ZNF593ENSG00000142684.7297.4552093.710901.6663019.0772017.40980K562PTBP1
ZNF593ENSG00000142684.7336.26750234.216200.521702.421601.90580K562PUS1
ZNF593ENSG00000142684.7344.66330228.192200.594803.129702.50470K562RBM15
ZNF593ENSG00000142684.7169.6175089.891300.915904.651003.52830K562RBM22
ZNF593ENSG00000142684.7316.93300158.122201.003004.192503.18360K562RPS19
ZNF593ENSG00000142684.7156.0994052.865501.562002.767701.76480K562RPS3
ZNF593ENSG00000142684.7302.03990174.111500.794605.100503.63250K562SAFB
ZNF593ENSG00000142684.7291.40210445.99490-0.614004.864503.80860K562SF3A3
ZNF593ENSG00000142684.791.1193046.841200.959903.161802.24630K562SF3B4
ZNF593ENSG00000142684.7226.3974091.860901.301209.301308.01550K562SRSF1
ZNF593ENSG00000142684.7141.6305051.000101.473506.521804.78490K562SRSF4
ZNF593ENSG00000142684.7137.0325086.738600.659702.360801.40340K562SRSF5
ZNF593ENSG00000142684.7205.69810341.89890-0.733004.669402.85360K562SSRP1
ZNF593ENSG00000142684.7213.51920312.71470-0.550502.718401.48140K562STAU1
ZNF593ENSG00000142684.7293.26350195.977100.581402.694801.88760K562SYNCRIP
ZNF593ENSG00000142684.712.4354044.23500-1.830703.531501.79960K562TAF15
ZNF593ENSG00000142684.7312.8941092.984201.750509.734108.27840K562TARDBP
ZNF593ENSG00000142684.7164.2997089.689900.873203.992402.98250K562TIA1
ZNF593ENSG00000142684.7377.86400601.81970-0.671505.452503.51910K562UBE2L3
ZNF593ENSG00000142684.7337.60030479.16380-0.505202.957602.21380K562UPF1
ZNF593ENSG00000142684.7277.73680409.99800-0.561903.748802.73010K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF593 is not available on ENCORE database.





1 RBPs can affect the splicing of ZNF593 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIZNF593ENSG00000142684.7chr1+2649690826498551264969082649697126497065264985510.056000.006300.09537includedK562RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF593 is not avaliable on ENCORE database.