ZC3H13

General Information

Gene Name       : ZC3H13
Gene ID             : ENSG00000123200.16
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ZC3H13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZC3H13ENSG00000123200.1639.4734.0636.77ENCSR000AEF
HepG2ZC3H13ENSG00000123200.1619.1024.5321.82ENCSR985KAT
K562ZC3H13ENSG00000123200.1616.4718.5517.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZC3H13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZC3H13 RNA is bound by 15 proteins.  







eCLIP assay for ZC3H13 is not avaliable on ENCORE database.





15 proteins are bound to ZC3H13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr134654344046543620-5'-UTR,CDS,intron-Distal3.9384411.21209HepG2BCLAF1
chr134655410646554140-CDS,intron-Distal,intron-Proximal3.113885.41277K562UCHL5
chr134661910646619152-CDS,intron-Distal4.337623.89826HepG2BCLAF1
chr134661626546616351-CDS,intron-Distal,intron-Proximal3.318084.50321HepG2PRPF8
chr134661636646616443-CDS,intron-Distal,intron-Proximal3.747897.55775HepG2U2AF2
chr134654211046542164-CDS,intron-Distal,intron-Proximal3.957764.04622HepG2GRWD1
chr134658452346584644-CDS,intron-Distal,intron-Proximal3.235935.29881K562ZNF800
chr134654347646543529-CDS,intron-Distal4.409623.87582K562ZNF622
chr134655943246559520-CDS,intron-Distal3.783796.18214HepG2GRWD1
chr134655409246554140-CDS,intron-Distal,intron-Proximal3.229924.33023K562ZNF622
chr134654343046543537-CDS,intron-Distal4.410443.31827HepG2GRWD1
chr134653807046538160-CDS,intron-Distal3.656346.81385HepG2BCLAF1
chr134659459746594689-CDS,intron-Distal5.150356.99374K562ZNF622
chr134657727446577321-CDS,intron-Distal3.548264.49347K562UCHL5
chr134654195346542036-CDS,intron-Distal3.557115.17903K562UCHL5
chr134654969546549849-CDS,intron-Distal5.0567915.52231K562UCHL5
chr134654942246549499-CDS,intron-Distal4.850856.44794K562UCHL5
chr134658554646585560-CDS,intron-Distal,intron-Proximal4.422594.37348HepG2BCLAF1
chr134658454346584641-CDS,intron-Distal,intron-Proximal4.2965811.98560K562UCHL5
chr134659461246594693-CDS,intron-Distal,intron-Proximal4.033785.35703HepG2BCLAF1
chr134655960946559858-CDS,intron-Distal4.2485316.71438K562UCHL5
chr134655942746559589-CDS,intron-Distal,intron-Proximal4.9527014.03003K562ZNF622
chr134654342146543480-CDS,intron-Distal4.340748.23108K562UCHL5
chr134661952646619569-CDS,intron-Distal3.521033.73423K562UCHL5
chr134654956446549596-CDS,intron-Distal4.352103.71613K562UCHL5
chr134655395546554057-CDS,intron-Distal3.483994.02291HepG2GRWD1
chr134656315446563227-CDS,intron-Distal3.906366.12731K562UCHL5
chr134654332846543384-CDS,intron-Distal3.289334.30396K562UCHL5
chr134654212646542165-CDS,intron-Distal,intron-Proximal5.032836.59793K562UCHL5
chr134661952346619633-CDS,intron-Distal,intron-Proximal3.357615.73981HepG2GRWD1
chr134658558446585654-CDS,intron-Distal3.085853.11583K562UCHL5
chr134654167046541919-CDS,intron-Distal4.7894811.66763HepG2FXR2
chr134654330746543378-CDS,intron-Distal3.275884.03389K562ZNF622
chr134658446546584517-CDS,intron-Distal,intron-Proximal3.457365.56491HepG2BCLAF1
chr134654183246541939-CDS,intron-Distal5.144367.49801K562ZNF622
chr134654208946542164-CDS,intron-Distal,intron-Proximal4.784185.78736K562ZNF622
chr134654941546549609-CDS,intron-Distal,intron-Proximal5.481329.70324HepG2FXR2
chr134655961046559758-CDS,intron-Distal5.8061310.96424K562ZNF622
chr134654943546549546-CDS,intron-Distal3.512994.44254K562GRWD1
chr134655408146554140-CDS,intron-Distal,intron-Proximal3.477445.45876HepG2BCLAF1
chr134654288046542925-CDS,intron-Distal,intron-Proximal4.940396.96356K562UCHL5
chr134659458346594612-CDS,intron-Distal,intron-Proximal4.310054.04372HepG2BCLAF1
chr134658454646584641-CDS,intron-Distal,intron-Proximal3.999909.36792K562ZNF622
chr134655952546559578-CDS,intron-Distal4.788665.23259HepG2BCLAF1
chr134655394946554017-CDS,intron-Distal3.937066.12731K562UCHL5
chr134655394746554034-CDS,intron-Distal,intron-Proximal3.138813.46047K562GRWD1
chr134658447546584546-CDS,intron-Distal,intron-Proximal3.420637.70405K562ZNF622
chr134658554946585601-CDS,intron-Distal,intron-Proximal4.548044.55944K562ZNF622
chr134653941446539460-CDS,intron-Distal,intron-Proximal4.741326.23323K562UCHL5
chr134655409846554143-CDS,intron-Distal,intron-Proximal4.410255.24155K562BUD13
chr134659458346594692-CDS,intron-Distal,intron-Proximal3.325157.85158K562UCHL5
chr134654179846541880-CDS,intron-Distal4.344559.20390K562UCHL5
chr134655943046559503-CDS,intron-Distal,intron-Proximal4.073879.69111HepG2BCLAF1
chr134658567246585688-CDS,intron-Distal4.120823.36385K562UCHL5
chr134654181646541881-CDS,intron-Distal4.254963.70678K562BUD13
chr134658452646584643-CDS,intron-Distal,intron-Proximal4.5511312.20601HepG2BCLAF1
chr134654173146541906-CDS,intron-Distal3.660454.86632HepG2G3BP1
chr134655394746554002-CDS,intron-Distal,intron-Proximal3.848814.51739HepG2BCLAF1
chr134653811946538177-CDS,intron-Distal5.013066.59793K562UCHL5
chr134654348046543540-CDS,intron-Distal5.347078.80307K562UCHL5
chr134654288046542924-CDS,intron-Distal,intron-Proximal4.673814.43680K562ZNF622
chr134661629346616406-CDS,intron-Distal,intron-Proximal3.395345.96568HepG2GRWD1
chr134655942846559498-CDS,intron-Distal,intron-Proximal4.8407411.46466K562UCHL5
chr134660199246602091-intron-Distal3.129414.56635K562KHSRP
chr134661516246615250-intron-Distal4.379975.68841K562KHSRP
chr134659043946590618-intron-Distal3.170307.20875K562KHSRP
chr134657337246573420-intron-Distal3.365773.07152HepG2HLTF
chr134660467246604724-intron-Distal3.957213.86809HepG2SUGP2
chr134661482946614914-intron-Distal4.326885.41654K562KHSRP
chr134658352046583682-intron-Distal5.6382112.57135HepG2QKI
chr134661473546614829-intron-Distal4.267565.02888K562KHSRP
chr134655136446551535-intron-Distal3.426523.53952HepG2KHSRP
chr134660260346602658-intron-Distal4.173694.28663HepG2SUGP2
chr134659086746590970-intron-Distal3.060064.05930HepG2QKI
chr134659241146592557-intron-Distal4.399434.07628HepG2PTBP1
chr134659233746592442-intron-Distal4.738565.54528HepG2QKI
chr134661491446615042-intron-Distal3.420266.57673K562KHSRP
chr134660209146602161-intron-Distal4.505234.72162K562KHSRP
chr134661900646619089-intron-Distal,intron-Proximal4.425405.41654K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZC3H13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZC3H13 is not available on ENCORE database.

  • 85 RBPs can affect the levels of ZC3H13.  








The Knockdown/knockout RNA-Seq assay for ZC3H13 is not available on ENCORE database.





85 RBPs can affect the gene expression of ZC3H13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZC3H13ENSG00000123200.121811.180601408.313000.362903.143702.00870HepG2AATF
ZC3H13ENSG00000123200.122095.886701805.607600.215002.629302.03360HepG2ACO1
ZC3H13ENSG00000123200.122174.976702541.57850-0.224702.831402.13860HepG2AUH
ZC3H13ENSG00000123200.122068.666401805.250100.196402.426201.79530HepG2CKAP4
ZC3H13ENSG00000123200.122809.076603884.92220-0.467805.205404.28910HepG2CPSF6
ZC3H13ENSG00000123200.121137.695001456.91300-0.356802.771601.75340HepG2YBX3
ZC3H13ENSG00000123200.121346.366401035.326400.378903.443702.25600HepG2CSTF2
ZC3H13ENSG00000123200.121727.165802060.72840-0.254702.702802.06590HepG2CELF1
ZC3H13ENSG00000123200.121841.444202215.71300-0.266904.118103.24240HepG2DAZAP1
ZC3H13ENSG00000123200.12985.384601247.66750-0.340501.923301.39970HepG2DDX6
ZC3H13ENSG00000123200.121018.667201430.47780-0.489806.300505.27300HepG2DNAJC21
ZC3H13ENSG00000123200.121042.100601417.99390-0.444407.045106.07180HepG2DNAJC2
ZC3H13ENSG00000123200.121935.037201467.707500.398704.370103.04600HepG2EIF3G
ZC3H13ENSG00000123200.122056.185701290.606700.671804.380903.52600HepG2EIF4B
ZC3H13ENSG00000123200.124213.488202918.155700.5299014.2032013.01070HepG2ETF1
ZC3H13ENSG00000123200.123833.589202934.989000.385202.148501.46630HepG2FIP1L1
ZC3H13ENSG00000123200.121329.56840924.260600.524505.707404.59040HepG2FUBP3
ZC3H13ENSG00000123200.121648.190701337.378300.301401.921001.34050HepG2FXR1
ZC3H13ENSG00000123200.121992.729001240.680900.683507.505506.43370HepG2G3BP1
ZC3H13ENSG00000123200.121953.854901317.055000.568906.010604.68750HepG2G3BP2
ZC3H13ENSG00000123200.122374.167104403.97410-0.8914013.7119012.39130HepG2GPKOW
ZC3H13ENSG00000123200.121367.736101723.85960-0.333904.571103.34320HepG2HDGF
ZC3H13ENSG00000123200.122035.438602673.01620-0.393105.610704.63280HepG2HNRNPF
ZC3H13ENSG00000123200.121857.658501256.146700.564406.398205.36690HepG2HNRNPK
ZC3H13ENSG00000123200.121519.133402018.32190-0.409908.249407.14220HepG2HNRNPL
ZC3H13ENSG00000123200.122655.823504202.78350-0.662209.303108.22530HepG2HNRNPLL
ZC3H13ENSG00000123200.121886.360702632.18560-0.480706.597905.52270HepG2IGF2BP1
ZC3H13ENSG00000123200.121252.183201630.06090-0.380505.916004.88050HepG2ILF2
ZC3H13ENSG00000123200.121734.870501268.455800.451702.982401.93530HepG2KHSRP
ZC3H13ENSG00000123200.121427.056301650.57350-0.209902.480101.51490HepG2KIF1C
ZC3H13ENSG00000123200.121864.967501337.844600.479104.156403.35510HepG2MAGOH
ZC3H13ENSG00000123200.121958.821801345.352900.541904.683303.87970HepG2MATR3
ZC3H13ENSG00000123200.121888.254401377.060200.455403.762403.02790HepG2NCBP2
ZC3H13ENSG00000123200.121892.756201233.209700.6180013.9345012.73890HepG2PCBP1
ZC3H13ENSG00000123200.122666.286901902.431600.486902.955701.88360HepG2PCBP2
ZC3H13ENSG00000123200.122618.282302293.386100.191002.002701.33720HepG2PRPF4
ZC3H13ENSG00000123200.121846.220901254.900800.5569011.7960010.82200HepG2PTBP1
ZC3H13ENSG00000123200.122591.883502226.449700.219203.569302.91300HepG2PUM1
ZC3H13ENSG00000123200.121874.485901358.952600.463906.683205.77450HepG2QKI
ZC3H13ENSG00000123200.122015.299901233.388200.708308.590007.45240HepG2RBM25
ZC3H13ENSG00000123200.122383.976601396.531100.7714022.3730021.12270HepG2NELFE
ZC3H13ENSG00000123200.121944.787001300.775100.5801012.6924011.51690HepG2RECQL
ZC3H13ENSG00000123200.122247.639502879.07790-0.357202.717402.03830HepG2RPLP0
ZC3H13ENSG00000123200.121725.823001383.874100.318502.481901.89650HepG2RPS19
ZC3H13ENSG00000123200.121207.228301421.11240-0.235302.545701.92310HepG2SAFB2
ZC3H13ENSG00000123200.122042.365801306.399300.6445015.4296014.20430HepG2SF3B4
ZC3H13ENSG00000123200.121704.740502011.07800-0.238403.152802.41180HepG2SLBP
ZC3H13ENSG00000123200.123524.558102754.753400.355407.482506.76890HepG2SRFBP1
ZC3H13ENSG00000123200.122246.508001363.644800.7201020.6513019.61240HepG2SRSF1
ZC3H13ENSG00000123200.123397.393004475.97970-0.397802.857001.83810HepG2SRSF3
ZC3H13ENSG00000123200.121986.722402626.05410-0.402505.832404.88230HepG2SRSF7
ZC3H13ENSG00000123200.121700.149901109.437900.6157014.6013013.51310HepG2SRSF9
ZC3H13ENSG00000123200.121492.142001982.57660-0.410002.849501.89580HepG2SUPT6H
ZC3H13ENSG00000123200.121958.850101225.826700.6762014.2105013.08550HepG2TAF15
ZC3H13ENSG00000123200.122232.621104096.11540-0.8755017.2411015.69490HepG2TARDBP
ZC3H13ENSG00000123200.121291.202301564.50300-0.277003.260202.65940HepG2TRIM56
ZC3H13ENSG00000123200.123777.913902511.178000.589107.589306.55330HepG2U2AF1
ZC3H13ENSG00000123200.12639.40890969.02920-0.599805.006903.97950HepG2UCHL5
ZC3H13ENSG00000123200.122193.304402727.53680-0.314505.538004.60310HepG2UPF1
ZC3H13ENSG00000123200.122100.633602633.33380-0.326105.443404.65030HepG2UTP3
ZC3H13ENSG00000123200.122567.602002263.314200.181902.248301.63440HepG2ZC3H8
ZC3H13ENSG00000123200.123718.404302360.510400.655508.488607.55160K562AQR
ZC3H13ENSG00000123200.122303.014303059.26920-0.409703.908502.87010K562BOP1
ZC3H13ENSG00000123200.123405.568605418.20180-0.669902.794601.72510K562CNOT7
ZC3H13ENSG00000123200.122027.333103252.83420-0.6821013.4671011.72050K562CPSF6
ZC3H13ENSG00000123200.121675.444302073.71050-0.307703.934102.47470K562DDX21
ZC3H13ENSG00000123200.121671.601702018.36740-0.272003.058402.30870K562EIF2S2
ZC3H13ENSG00000123200.121971.154502930.16160-0.571903.861002.84860K562FIP1L1
ZC3H13ENSG00000123200.122394.917503309.77200-0.466805.391104.19040K562FMR1
ZC3H13ENSG00000123200.122246.252402805.36950-0.320702.217001.40270K562FTO
ZC3H13ENSG00000123200.122121.656302497.90080-0.235502.451501.38280K562GLRX3
ZC3H13ENSG00000123200.121993.113903105.61890-0.6399010.232208.68790K562GPKOW
ZC3H13ENSG00000123200.121433.441002689.66020-0.9079019.7574017.64340K562GRSF1
ZC3H13ENSG00000123200.121124.293901569.69560-0.481503.238702.60010K562HNRNPC
ZC3H13ENSG00000123200.122716.719803289.96680-0.276202.565101.54970K562HNRNPL
ZC3H13ENSG00000123200.121615.908802409.89680-0.576602.292401.44890K562HNRNPM
ZC3H13ENSG00000123200.122175.636103972.96180-0.868807.074905.81370K562HSPD1
ZC3H13ENSG00000123200.122107.539403031.44630-0.524407.361005.89680K562METAP2
ZC3H13ENSG00000123200.121954.232502626.19860-0.426408.953007.57770K562MTPAP
ZC3H13ENSG00000123200.122716.988101918.250000.502103.833002.74970K562NAA15
ZC3H13ENSG00000123200.122269.251502918.04560-0.362809.681208.39910K562NSUN2
ZC3H13ENSG00000123200.121887.993001555.333200.279502.164501.30330K562PCBP2
ZC3H13ENSG00000123200.121806.715203326.02020-0.880407.652106.14520K562PPIG
ZC3H13ENSG00000123200.121045.801101407.31790-0.428302.550201.68770K562PSIP1
ZC3H13ENSG00000123200.123237.212003962.63210-0.291704.193803.00570K562PUM2
ZC3H13ENSG00000123200.122867.793202224.368900.366405.302304.50550K562RBM15
ZC3H13ENSG00000123200.12950.542201251.91730-0.397302.295201.55350K562RPS19
ZC3H13ENSG00000123200.121301.033901608.80920-0.306302.499401.47160K562SAFB
ZC3H13ENSG00000123200.122110.250902879.21300-0.448308.155806.81400K562SF3A3
ZC3H13ENSG00000123200.121907.014901527.300300.320203.278002.34580K562SF3B4
ZC3H13ENSG00000123200.121256.952801685.03090-0.422803.742602.91450K562TARDBP
ZC3H13ENSG00000123200.121838.819601423.717200.369002.515701.48080K562U2AF1
ZC3H13ENSG00000123200.121831.710101470.454100.316803.167202.30860K562U2AF2
ZC3H13ENSG00000123200.122405.444803094.05750-0.363207.208206.11240K562UPF1
ZC3H13ENSG00000123200.121846.727502647.50060-0.519707.652506.15590K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZC3H13 is not available on ENCORE database.





7 RBPs can affect the splicing of ZC3H13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZC3H13ENSG00000123200.12chr13-4655031646550400465494174654997346553947465541390.136000.000020.00074includedK562SRSF1
SEZC3H13ENSG00000123200.12chr13-4654449646544600465428824654410646549417465499730.056000.005370.05617includedHepG2U2AF2
SEZC3H13ENSG00000123200.12chr13-465945834659469246585549465856894661629846616410-0.114000.000230.00354excludedK562AQR
SEZC3H13ENSG00000123200.12chr13-465379764653817746533617465337814653941446539564-0.106000.000030.00066excludedK562AQR
SEZC3H13ENSG00000123200.12chr13-4662606646626121466195254661965146626832466268940.519000.000400.01920includedK562FXR1
SEZC3H13ENSG00000123200.12chr13-4657534946575595465629214656323246577273465774710.089000.000770.06712includedHepG2SRSF7
SEZC3H13ENSG00000123200.12chr13-4655031646550400465494174654997346553947465541390.160000.000030.00152includedHepG2SRSF1
SEZC3H13ENSG00000123200.12chr13-465753494657559546562921465632324657727346577471-0.066000.000380.09448excludedHepG2DROSHA
A3SSZC3H13ENSG00000123200.12chr13-4658554946585733465855494658568946594583465946920.086000.000400.00309longerK562AQR
A3SSZC3H13ENSG00000123200.12chr13-4654449646544668465444964654460046549417465499730.138000.000000.00000longerK562AQR
A3SSZC3H13ENSG00000123200.12chr13-4661629846616463466162984661641046619089466192160.076000.000550.00404longerK562AQR
A3SSZC3H13ENSG00000123200.12chr13-4653361746533855465336174653378146537976465381770.078000.000020.00016longerK562AQR
A3SSZC3H13ENSG00000123200.12chr13-4659458346594722465945834659469246616298466164630.072000.001570.01040longerK562AQR
A3SSZC3H13ENSG00000123200.12chr13-4657727346577488465772734657747146584482465846400.135000.000010.00013longerK562AQR
A3SSZC3H13ENSG00000123200.12chr13-4661952546619733466195254661965146626832466268940.242000.007140.03948longerK562AQR
A3SSZC3H13ENSG00000123200.12chr13-465855494658568946585549465856304659458346594692-0.138000.001560.06382shorterK562U2AF1
MXEZC3H13ENSG00000123200.12chr13-46594583465946924661629846616463465855494658568946619089466191990.124000.000170.001941includedK562AQR
MXEZC3H13ENSG00000123200.12chr13-46616298466164104661908946619216465945834659469246619525466196510.063000.002110.017421includedK562AQR
MXEZC3H13ENSG00000123200.12chr13-46616298466164104661908946619239465945834659469246619525466197330.057000.004380.032151includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZC3H13 is not avaliable on ENCORE database.