ZC3H13

General Information

Gene Name : ZC3H13
Gene ID : ENSG00000123200.16
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZC3H13)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZC3H13	ENSG00000123200.16	39.47	34.06	36.77	ENCSR000AEF
HepG2	ZC3H13	ENSG00000123200.16	19.10	24.53	21.82	ENCSR985KAT
K562	ZC3H13	ENSG00000123200.16	16.47	18.55	17.51	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZC3H13 is not avaliable on ENCORE database.

Proteins bound to RNA

ZC3H13 RNA is bound by 15 proteins.

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eCLIP assay for ZC3H13 is not avaliable on ENCORE database.

15 proteins are bound to ZC3H13 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	46559609	46559858	-	CDS,intron-Distal	4.24853	16.71438	K562	UCHL5
chr13	46549695	46549849	-	CDS,intron-Distal	5.05679	15.52231	K562	UCHL5
chr13	46559427	46559589	-	CDS,intron-Distal,intron-Proximal	4.95270	14.03003	K562	ZNF622
chr13	46583520	46583682	-	intron-Distal	5.63821	12.57135	HepG2	QKI
chr13	46584526	46584643	-	CDS,intron-Distal,intron-Proximal	4.55113	12.20601	HepG2	BCLAF1
chr13	46584543	46584641	-	CDS,intron-Distal,intron-Proximal	4.29658	11.98560	K562	UCHL5
chr13	46541670	46541919	-	CDS,intron-Distal	4.78948	11.66763	HepG2	FXR2
chr13	46559428	46559498	-	CDS,intron-Distal,intron-Proximal	4.84074	11.46466	K562	UCHL5
chr13	46543440	46543620	-	5'-UTR,CDS,intron-Distal	3.93844	11.21209	HepG2	BCLAF1
chr13	46559610	46559758	-	CDS,intron-Distal	5.80613	10.96424	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 79 entries

eCLIP assay for ZC3H13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZC3H13 is not available on ENCORE database.
85 RBPs can affect the levels of ZC3H13.

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The Knockdown/knockout RNA-Seq assay for ZC3H13 is not available on ENCORE database.

85 RBPs can affect the gene expression of ZC3H13 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZC3H13	ENSG00000123200.12	2383.97660	1396.53110	0.77140	22.37300	21.12270	HepG2	NELFE
ZC3H13	ENSG00000123200.12	2246.50800	1363.64480	0.72010	20.65130	19.61240	HepG2	SRSF1
ZC3H13	ENSG00000123200.12	1433.44100	2689.66020	-0.90790	19.75740	17.64340	K562	GRSF1
ZC3H13	ENSG00000123200.12	2232.62110	4096.11540	-0.87550	17.24110	15.69490	HepG2	TARDBP
ZC3H13	ENSG00000123200.12	2042.36580	1306.39930	0.64450	15.42960	14.20430	HepG2	SF3B4
ZC3H13	ENSG00000123200.12	1700.14990	1109.43790	0.61570	14.60130	13.51310	HepG2	SRSF9
ZC3H13	ENSG00000123200.12	1958.85010	1225.82670	0.67620	14.21050	13.08550	HepG2	TAF15
ZC3H13	ENSG00000123200.12	4213.48820	2918.15570	0.52990	14.20320	13.01070	HepG2	ETF1
ZC3H13	ENSG00000123200.12	1892.75620	1233.20970	0.61800	13.93450	12.73890	HepG2	PCBP1
ZC3H13	ENSG00000123200.12	2374.16710	4403.97410	-0.89140	13.71190	12.39130	HepG2	GPKOW
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 95 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZC3H13 is not available on ENCORE database.

7 RBPs can affect the splicing of ZC3H13 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	ZC3H13	ENSG00000123200.12	chr13	-	46544496	46544668			46544496	46544600	46549417	46549973	0.13800	0.00000	0.00000	longer	K562	AQR
A3SS	ZC3H13	ENSG00000123200.12	chr13	-	46577273	46577488			46577273	46577471	46584482	46584640	0.13500	0.00001	0.00013	longer	K562	AQR
SE	ZC3H13	ENSG00000123200.12	chr13	-	46550316	46550400			46549417	46549973	46553947	46554139	0.13600	0.00002	0.00074	included	K562	SRSF1
A3SS	ZC3H13	ENSG00000123200.12	chr13	-	46533617	46533855			46533617	46533781	46537976	46538177	0.07800	0.00002	0.00016	longer	K562	AQR
SE	ZC3H13	ENSG00000123200.12	chr13	-	46537976	46538177			46533617	46533781	46539414	46539564	-0.10600	0.00003	0.00066	excluded	K562	AQR
SE	ZC3H13	ENSG00000123200.12	chr13	-	46550316	46550400			46549417	46549973	46553947	46554139	0.16000	0.00003	0.00152	included	HepG2	SRSF1
MXE	ZC3H13	ENSG00000123200.12	chr13	-	46594583	46594692	46616298	46616463	46585549	46585689	46619089	46619199	0.12400	0.00017	0.00194	1included	K562	AQR
SE	ZC3H13	ENSG00000123200.12	chr13	-	46594583	46594692			46585549	46585689	46616298	46616410	-0.11400	0.00023	0.00354	excluded	K562	AQR
SE	ZC3H13	ENSG00000123200.12	chr13	-	46575349	46575595			46562921	46563232	46577273	46577471	-0.06600	0.00038	0.09448	excluded	HepG2	DROSHA
SE	ZC3H13	ENSG00000123200.12	chr13	-	46626066	46626121			46619525	46619651	46626832	46626894	0.51900	0.00040	0.01920	included	K562	FXR1

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZC3H13

General Information

Functions

Localization

Domains (AlphaFold: ZC3H13)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZC3H13 is not avaliable on ENCORE database.

15 proteins are bound to ZC3H13 RNA:

eCLIP assay for ZC3H13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZC3H13 is not available on ENCORE database.

85 RBPs can affect the gene expression of ZC3H13 :

The Knockdown/knockout RNA-Seq assay for ZC3H13 is not available on ENCORE database.

7 RBPs can affect the splicing of ZC3H13 :

The Knockdown/knockout RNA-Seq assay for ZC3H13 is not avaliable on ENCORE database.