The Knockdown/knockout RNA-Seq assay for TRIO is not available on ENCORE database.
66 RBPs can affect the gene expression of TRIO :
Gene Name | Gene ID | KDMean | CNMean | log2(fold change) * | -log(pval) ** | -log(padj) ** | Cell Line | Affected by RBP | Bound by RBP |
TRIO | ENSG00000038382.13 | 3144.80290 | 2556.99540 | 0.29840 | 5.38350 | 4.59020 | HepG2 | ACO1 | |
TRIO | ENSG00000038382.13 | 3098.94420 | 2568.87680 | 0.27050 | 3.90850 | 3.00930 | HepG2 | AKAP8L | |
TRIO | ENSG00000038382.13 | 1639.77510 | 2108.87600 | -0.36300 | 2.73950 | 1.95860 | HepG2 | ASCC1 | |
TRIO | ENSG00000038382.13 | 1276.64460 | 1846.98830 | -0.53280 | 4.20430 | 3.04940 | HepG2 | BCCIP | |
TRIO | ENSG00000038382.13 | 1992.82630 | 1604.91480 | 0.31220 | 2.10360 | 1.31560 | HepG2 | BCLAF1 | |
TRIO | ENSG00000038382.13 | 2037.46330 | 1686.10570 | 0.27300 | 2.63070 | 1.87790 | HepG2 | CALR | |
TRIO | ENSG00000038382.13 | 1712.60910 | 2380.76500 | -0.47520 | 2.56640 | 1.83100 | HepG2 | CNOT7 | |
TRIO | ENSG00000038382.13 | 2317.07100 | 1890.15910 | 0.29370 | 2.24340 | 1.61560 | HepG2 | CPSF6 | |
TRIO | ENSG00000038382.13 | 2969.93710 | 2222.96990 | 0.41780 | 7.46700 | 6.50640 | HepG2 | CELF1 | |
TRIO | ENSG00000038382.13 | 2537.63890 | 1815.95930 | 0.48270 | 4.05260 | 3.13600 | HepG2 | DDX55 | |
TRIO | ENSG00000038382.13 | 1383.46670 | 1612.41060 | -0.22090 | 2.66890 | 2.02680 | HepG2 | DNAJC2 | |
TRIO | ENSG00000038382.13 | 3031.53740 | 2016.15640 | 0.58830 | 6.55090 | 5.66170 | HepG2 | EIF2S1 | |
TRIO | ENSG00000038382.13 | 3734.63300 | 2169.44070 | 0.78350 | 7.77010 | 6.64750 | HepG2 | EIF4B | |
TRIO | ENSG00000038382.13 | 3032.47740 | 2258.93860 | 0.42480 | 4.37230 | 3.36310 | HepG2 | EIF4G2 | |
TRIO | ENSG00000038382.13 | 3383.33310 | 2650.20820 | 0.35220 | 2.31830 | 1.60960 | HepG2 | FIP1L1 | |
TRIO | ENSG00000038382.13 | 2125.28360 | 1383.30780 | 0.61940 | 9.01930 | 7.64100 | HepG2 | FUBP3 | |
TRIO | ENSG00000038382.13 | 2745.30270 | 2085.42000 | 0.39650 | 3.06720 | 2.36820 | HepG2 | G3BP1 | |
TRIO | ENSG00000038382.13 | 2974.12710 | 2214.12430 | 0.42560 | 3.93990 | 2.86650 | HepG2 | G3BP2 | |
TRIO | ENSG00000038382.13 | 2339.70560 | 1820.82840 | 0.36160 | 2.73420 | 1.72270 | HepG2 | GNB2L1 | |
TRIO | ENSG00000038382.13 | 1690.04570 | 2177.38430 | -0.36550 | 7.28670 | 6.23940 | HepG2 | HNRNPL | |
TRIO | ENSG00000038382.13 | 2928.27210 | 2044.78540 | 0.51800 | 5.74930 | 4.87520 | HepG2 | HNRNPLL | |
TRIO | ENSG00000038382.13 | 2962.09280 | 2119.73380 | 0.48260 | 4.69960 | 3.84010 | HepG2 | IGF2BP2 | |
TRIO | ENSG00000038382.13 | 3281.67320 | 2249.01340 | 0.54500 | 5.75280 | 4.81800 | HepG2 | MAGOH | |
TRIO | ENSG00000038382.13 | 2308.34820 | 1813.07480 | 0.34830 | 2.95010 | 2.17800 | HepG2 | NSUN2 | |
TRIO | ENSG00000038382.13 | 2688.30880 | 2061.31310 | 0.38300 | 3.00970 | 2.25840 | HepG2 | PABPC4 | |
TRIO | ENSG00000038382.13 | 2593.74040 | 2113.06680 | 0.29560 | 3.92310 | 3.22710 | HepG2 | PCBP1 | |
TRIO | ENSG00000038382.13 | 3458.64000 | 2150.21430 | 0.68560 | 21.35210 | 20.10790 | HepG2 | PTBP1 | |
TRIO | ENSG00000038382.13 | 3766.75380 | 2262.55130 | 0.73530 | 3.09300 | 2.46870 | HepG2 | PUF60 | |
TRIO | ENSG00000038382.13 | 3079.13260 | 2401.78190 | 0.35830 | 8.74770 | 7.81780 | HepG2 | PUM1 | |
TRIO | ENSG00000038382.13 | 3199.49310 | 2400.03760 | 0.41470 | 5.91010 | 4.94310 | HepG2 | PUM2 | |
TRIO | ENSG00000038382.13 | 3416.37430 | 2604.44240 | 0.39140 | 8.92260 | 7.92050 | HepG2 | PUS1 | |
TRIO | ENSG00000038382.13 | 3448.46000 | 2328.54380 | 0.56640 | 11.67130 | 10.52070 | HepG2 | QKI | |
TRIO | ENSG00000038382.13 | 2577.54040 | 2113.37550 | 0.28630 | 2.75170 | 2.07880 | HepG2 | RBM25 | |
TRIO | ENSG00000038382.13 | 2798.11820 | 2392.90740 | 0.22560 | 2.83360 | 2.28730 | HepG2 | NELFE | |
TRIO | ENSG00000038382.13 | 1921.84200 | 1385.83060 | 0.47160 | 3.85390 | 2.94390 | HepG2 | RRP9 | |
TRIO | ENSG00000038382.13 | 3108.73560 | 2023.94840 | 0.61910 | 8.86630 | 7.67230 | HepG2 | SF3B1 | |
TRIO | ENSG00000038382.13 | 4032.36340 | 2238.48960 | 0.84900 | 34.51190 | 32.84370 | HepG2 | SF3B4 | |
TRIO | ENSG00000038382.13 | 2818.55690 | 2169.40070 | 0.37760 | 8.53130 | 7.40530 | HepG2 | SLBP | |
TRIO | ENSG00000038382.13 | 4922.97090 | 3517.06630 | 0.48510 | 14.69330 | 13.78100 | HepG2 | SRFBP1 | |
TRIO | ENSG00000038382.13 | 2993.14550 | 2233.92040 | 0.42200 | 8.58070 | 7.55590 | HepG2 | SRSF5 | |
TRIO | ENSG00000038382.13 | 2535.48430 | 1900.97610 | 0.41540 | 8.77250 | 7.88760 | HepG2 | SRSF9 | |
TRIO | ENSG00000038382.13 | 3615.58100 | 3053.59390 | 0.24360 | 3.69110 | 3.11790 | HepG2 | SSB | |
TRIO | ENSG00000038382.13 | 3664.89140 | 2540.59960 | 0.52850 | 16.49480 | 15.18040 | HepG2 | SUCLG1 | |
TRIO | ENSG00000038382.13 | 2800.37300 | 2100.37740 | 0.41490 | 7.08280 | 6.25710 | HepG2 | TAF15 | |
TRIO | ENSG00000038382.13 | 3654.74860 | 2266.82230 | 0.68900 | 9.90860 | 8.70580 | HepG2 | U2AF1 | |
TRIO | ENSG00000038382.13 | 4992.13580 | 2408.99070 | 1.05110 | 3.57340 | 2.44910 | HepG2 | U2AF2 | |
TRIO | ENSG00000038382.13 | 3126.96410 | 2339.64600 | 0.41840 | 3.48360 | 2.53960 | HepG2 | UBE2L3 | |
TRIO | ENSG00000038382.13 | 806.32120 | 1067.92780 | -0.40540 | 2.79000 | 2.02660 | HepG2 | UCHL5 | |
TRIO | ENSG00000038382.13 | 3378.22850 | 2932.12050 | 0.20420 | 2.73320 | 2.03710 | HepG2 | UPF1 | |
TRIO | ENSG00000038382.13 | 1230.00210 | 1655.43400 | -0.42850 | 2.21780 | 1.32430 | HepG2 | UPF2 | |
TRIO | ENSG00000038382.13 | 1187.82240 | 1779.56250 | -0.58320 | 5.77800 | 4.74170 | HepG2 | XRN2 | |
TRIO | ENSG00000038382.13 | 4852.81340 | 3224.76880 | 0.58950 | 26.20300 | 24.95240 | HepG2 | ZNF622 | |
TRIO | ENSG00000038382.13 | 194.95430 | 117.11040 | 0.73520 | 3.53540 | 2.90690 | K562 | AGGF1 | |
TRIO | ENSG00000038382.13 | 134.24520 | 203.65930 | -0.60130 | 2.47920 | 1.55690 | K562 | CELF1 | |
TRIO | ENSG00000038382.13 | 66.87190 | 121.73980 | -0.86430 | 2.93810 | 1.68860 | K562 | DDX21 | |
TRIO | ENSG00000038382.13 | 102.50540 | 54.32100 | 0.91600 | 2.78380 | 1.65530 | K562 | FKBP4 | |
TRIO | ENSG00000038382.13 | 145.98890 | 66.27030 | 1.13930 | 3.60350 | 1.94310 | K562 | GEMIN5 | |
TRIO | ENSG00000038382.13 | 176.61320 | 118.08230 | 0.58070 | 1.96890 | 1.32510 | K562 | GRSF1 | |
TRIO | ENSG00000038382.13 | 156.44440 | 92.26710 | 0.76170 | 3.37180 | 2.18140 | K562 | HNRNPA1 | |
TRIO | ENSG00000038382.13 | 151.85690 | 86.59680 | 0.81020 | 3.01220 | 1.72170 | K562 | HNRNPK | |
TRIO | ENSG00000038382.13 | 221.99480 | 102.17910 | 1.11930 | 8.05530 | 6.53550 | K562 | HNRNPU | |
TRIO | ENSG00000038382.13 | 21.01920 | 52.11110 | -1.30990 | 2.97240 | 1.42280 | K562 | ILF3 | |
TRIO | ENSG00000038382.13 | 207.55340 | 91.14280 | 1.18720 | 8.25270 | 6.76410 | K562 | MAGOH | |
TRIO | ENSG00000038382.13 | 232.01990 | 144.87840 | 0.67930 | 2.83720 | 1.91360 | K562 | MBNL1 | |
TRIO | ENSG00000038382.13 | 169.43910 | 113.76060 | 0.57470 | 2.31350 | 1.57180 | K562 | MTPAP | |
TRIO | ENSG00000038382.13 | 126.76180 | 56.07800 | 1.17650 | 4.83050 | 3.59110 | K562 | PSIP1 | |
TRIO | ENSG00000038382.13 | 125.16570 | 57.16170 | 1.13060 | 3.97670 | 2.79770 | K562 | SF3B1 | |
TRIO | ENSG00000038382.13 | 186.73340 | 127.78650 | 0.54710 | 2.33490 | 1.46600 | K562 | SRPK2 | |
TRIO | ENSG00000038382.13 | 141.89270 | 87.85310 | 0.69150 | 2.53020 | 1.85170 | K562 | TARDBP | |
TRIO | ENSG00000038382.13 | 85.23330 | 134.01480 | -0.65290 | 2.27060 | 1.61540 | K562 | UPF1 | |
Gene Name | Gene ID | KDMean | CNMean | log2(fold change) | -log(pval) | -log(padj) | Cell Line | Affected by RBP | Bound by RBP |
*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".
The Knockdown/knockout RNA-Seq assay for TRIO is not available on ENCORE database.
10 RBPs can affect the splicing of TRIO :
Event Type | Gene Name | Gene ID | chr | Strand | ExonStart | ExonEnd | 2ndExonStart | 2ndExonEnd | upstreamES | upstreamEE | downstreamES | downstreamEE | dPSI | p-value | FDR | is_included | Cell Line | Affected by RBP | Bound by RBP |
SE | TRIO | ENSG00000038382.13 | chr5 | + | 14459272 | 14459430 | | | 14419886 | 14420130 | 14461127 | 14461420 | 0.14700 | 0.00090 | 0.01877 | included | HepG2 | U2AF1 | |
SE | TRIO | ENSG00000038382.13 | chr5 | + | 14507060 | 14507139 | | | 14504501 | 14504702 | 14507230 | 14507369 | 0.11200 | 0.00373 | 0.07686 | included | HepG2 | HNRNPK | |
SE | TRIO | ENSG00000038382.13 | chr5 | + | 14506905 | 14507146 | | | 14504501 | 14504702 | 14507230 | 14507369 | -0.08400 | 0.00170 | 0.08466 | excluded | HepG2 | AKAP1 | |
SE | TRIO | ENSG00000038382.13 | chr5 | + | 14399927 | 14400015 | | | 14398988 | 14399179 | 14401071 | 14401173 | 0.10300 | 0.00001 | 0.00099 | included | HepG2 | SF3A3 | |
SE | TRIO | ENSG00000038382.13 | chr5 | + | 14506905 | 14507146 | | | 14504501 | 14504702 | 14507230 | 14507369 | 0.13700 | 0.00228 | 0.05794 | included | HepG2 | SF3A3 | |
SE | TRIO | ENSG00000038382.13 | chr5 | + | 14489138 | 14489206 | | | 14487572 | 14488369 | 14492675 | 14492923 | 0.09300 | 0.00001 | 0.00091 | included | HepG2 | SF3A3 | |
SE | TRIO | ENSG00000038382.13 | chr5 | + | 14489138 | 14489206 | | | 14487572 | 14488369 | 14492675 | 14492923 | 0.08500 | 0.00036 | 0.04714 | included | HepG2 | SSB | |
SE | TRIO | ENSG00000038382.13 | chr5 | + | 14311403 | 14311604 | | | 14304569 | 14304701 | 14316621 | 14316852 | 0.08400 | 0.00092 | 0.04023 | included | HepG2 | HNRNPU | |
A3SS | TRIO | ENSG00000038382.13 | chr5 | + | 14485177 | 14485355 | | | 14485284 | 14485355 | 14482690 | 14482882 | -0.28000 | 0.00001 | 0.00504 | shorter | HepG2 | CDC40 | |
A5SS | TRIO | ENSG00000038382.13 | chr5 | + | 14497955 | 14498106 | | | 14497955 | 14497983 | 14498197 | 14498360 | -0.06400 | 0.00019 | 0.04279 | shorter | HepG2 | HNRNPUL1 | |
MXE | TRIO | ENSG00000038382.13 | chr5 | + | 14485284 | 14485355 | 14487572 | 14488369 | 14482690 | 14482882 | 14492675 | 14492923 | 0.18400 | 0.00276 | 0.04638 | 1included | HepG2 | U2AF1 | |
MXE | TRIO | ENSG00000038382.13 | chr5 | + | 14497955 | 14497983 | 14498008 | 14498106 | 14496987 | 14497126 | 14498197 | 14498360 | 0.05300 | 0.00543 | 0.06666 | 1included | HepG2 | HNRNPUL1 | |
MXE | TRIO | ENSG00000038382.13 | chr5 | + | 14497955 | 14497983 | 14498008 | 14498106 | 14496987 | 14497126 | 14498197 | 14498360 | 0.07000 | 0.00057 | 0.03750 | 1included | HepG2 | LARP4 | |
MXE | TRIO | ENSG00000038382.13 | chr5 | + | 14497955 | 14497983 | 14498008 | 14498106 | 14496987 | 14497126 | 14498197 | 14498360 | -0.09000 | 0.00170 | 0.07280 | 2included | HepG2 | DDX6 | |
*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".
The Knockdown/knockout RNA-Seq assay for TRIO is not avaliable on ENCORE database.