TMCO6

General Information

Gene Name       : TMCO6
Gene ID             : ENSG00000113119.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMCO6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMCO6ENSG00000113119.124.637.335.98ENCSR000AEF
HepG2TMCO6ENSG00000113119.1217.5612.6715.11ENCSR985KAT
K562TMCO6ENSG00000113119.1213.0411.2612.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMCO6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMCO6 RNA is bound by 16 proteins.  







eCLIP assay for TMCO6 is not avaliable on ENCORE database.





16 proteins are bound to TMCO6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5140021842140021904+3'-UTR,CDS,intron-Distal,intron-Proximal4.106656.28719HepG2SF3A3
chr5140021248140021304+3'-UTR,5'-UTR,CDS,intron-Proximal3.9558911.55292HepG2PPIG
chr5140021312140021363+3'-UTR,5'-UTR,CDS3.7707010.57119HepG2PPIG
chr5140022207140022245+3'-UTR,CDS3.817266.70085HepG2PPIG
chr5140021358140021438+3'-UTR,5'-UTR,CDS,intron-Proximal4.306919.91476HepG2PRPF8
chr5140022245140022255+3'-UTR,CDS5.045376.76175HepG2PPIG
chr5140021295140021343+3'-UTR,5'-UTR,CDS3.998563.82000HepG2GRWD1
chr5140021886140021956+3'-UTR,CDS,intron-Distal,intron-Proximal3.370154.41130K562AQR
chr5140022508140022544+3'-UTR,CDS,intron-Proximal5.351838.55457HepG2PPIG
chr5140021828140021929+3'-UTR,CDS,intron-Distal,intron-Proximal5.024996.03362HepG2AQR
chr5140021753140021868+3'-UTR,intron-Distal,intron-Proximal4.914237.72290HepG2HNRNPK
chr5140022545140022614+3'-UTR,CDS3.170273.60157HepG2GRWD1
chr5140021373140021439+3'-UTR,CDS,intron-Proximal4.671314.97857HepG2AQR
chr5140021390140021484+3'-UTR,CDS,intron-Distal,intron-Proximal3.8782611.45545HepG2BUD13
chr5140021455140021477+3'-UTR,CDS,intron-Distal,intron-Proximal5.021916.91190HepG2PPIG
chr5140021254140021353+3'-UTR,5'-UTR,CDS4.040583.36385K562UCHL5
chr5140021386140021452+3'-UTR,CDS,intron-Proximal3.7789210.41397HepG2EFTUD2
chr5140021394140021445+3'-UTR,CDS,intron-Proximal4.036195.73742HepG2RBM22
chr5140021932140021973+3'-UTR,CDS,intron-Distal4.200547.79455HepG2PPIG
chr5140022170140022196+3'-UTR,CDS,intron-Proximal3.024895.21025HepG2PPIG
chr5140019040140019225+5'-UTR,CDS,intron-Proximal3.444698.57919HepG2NCBP2
chr5140019403140019445+5'-UTR,CDS,intron-Proximal3.815863.34184HepG2GRWD1
chr5140019277140019359+5'-UTR,CDS,intron-Proximal4.793693.93614HepG2AQR
chr5140019170140019241+5'-UTR,CDS,intron-Proximal3.817923.15816HepG2PRPF4
chr5140019093140019121+5'-UTR,CDS3.005163.47879HepG2PPIG
chr5140019355140019448+5'-UTR,CDS,intron-Proximal4.2721112.11762HepG2PPIG
chr5140019434140019481+5'-UTR,CDS,intron-Proximal3.208593.93669K562AQR
chr5140019421140019477+5'-UTR,CDS,intron-Proximal3.043065.76569HepG2PRPF8
chr5140023209140023262+CDS,intron-Proximal3.4526810.41365HepG2PPIG
chr5140024551140024610+CDS,intron-Proximal4.135654.21358HepG2U2AF2
chr5140023752140023808+CDS,intron-Proximal5.723797.36776HepG2PRPF8
chr5140023493140023540+CDS4.869846.56499HepG2PPIG
chr5140023364140023439+CDS,intron-Proximal3.3206310.37782HepG2PPIG
chr5140021973140022004+CDS,intron-Distal,intron-Proximal3.531784.51003HepG2PPIG
chr5140024324140024381+CDS,intron-Proximal6.3004516.44435K562AQR
chr5140024547140024620+CDS,intron-Proximal5.206366.83960K562AQR
chr5140023486140023548+CDS3.805636.77200HepG2U2AF2
chr5140020900140020971+intron-Distal,intron-Proximal4.244343.93366K562RBFOX2
chr5140020434140020559+intron-Distal,intron-Proximal3.078263.06355HepG2KHSRP
chr5140020891140020956+intron-Distal,intron-Proximal4.155667.07105HepG2RBFOX2
chr5140020332140020378+intron-Distal4.566614.79708HepG2U2AF2
chr5140019241140019277+intron-Proximal3.901033.02757HepG2AQR
chr5140019236140019312+intron-Proximal4.489505.07796HepG2SF3B4
chr5140021176140021234+intron-Proximal5.106658.55860HepG2SF3A3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMCO6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMCO6 is not available on ENCORE database.

  • 73 RBPs can affect the levels of TMCO6.  








The Knockdown/knockout RNA-Seq assay for TMCO6 is not available on ENCORE database.





73 RBPs can affect the gene expression of TMCO6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMCO6ENSG00000113119.8606.13530432.101300.488202.432301.54900HepG2ABCF1
TMCO6ENSG00000113119.8170.76300315.72960-0.886708.219107.28470HepG2ACO1
TMCO6ENSG00000113119.8294.78190197.583400.577102.966301.93510HepG2ADAR
TMCO6ENSG00000113119.8131.31970482.20300-1.8766021.1914019.86350HepG2AKAP1
TMCO6ENSG00000113119.8334.32150503.39200-0.590405.542104.62760HepG2AUH
TMCO6ENSG00000113119.8253.97010379.06360-0.577803.145202.32260HepG2CIRBP
TMCO6ENSG00000113119.8307.48260206.253600.576002.921802.21820HepG2CPSF6
TMCO6ENSG00000113119.8239.80710368.85160-0.621204.578003.78790HepG2CELF1
TMCO6ENSG00000113119.8506.32460396.577400.352402.760302.01930HepG2DAZAP1
TMCO6ENSG00000113119.8241.11640461.92360-0.937907.553506.56550HepG2DDX3X
TMCO6ENSG00000113119.8281.36890396.77940-0.495902.222501.66310HepG2DDX6
TMCO6ENSG00000113119.8478.91440302.067300.664806.271005.32970HepG2DKC1
TMCO6ENSG00000113119.8302.41550198.983600.603803.879203.05840HepG2DNAJC21
TMCO6ENSG00000113119.8272.57180410.43160-0.590502.662401.98680HepG2EIF4B
TMCO6ENSG00000113119.8423.56590578.00840-0.448504.136603.42690HepG2ETF1
TMCO6ENSG00000113119.8368.61920206.609700.835102.822801.79760HepG2FTO
TMCO6ENSG00000113119.8320.42090425.30820-0.408501.922701.34200HepG2FXR1
TMCO6ENSG00000113119.8328.20630200.889200.708104.031303.27280HepG2HNRNPA1
TMCO6ENSG00000113119.8362.12550209.988500.786103.388202.60080HepG2HNRNPF
TMCO6ENSG00000113119.8305.65800221.956200.461502.303201.74530HepG2HNRNPU
TMCO6ENSG00000113119.8414.90640206.775801.004609.865608.57920HepG2IGF2BP1
TMCO6ENSG00000113119.8299.43510401.06060-0.421602.006001.42190HepG2IGF2BP2
TMCO6ENSG00000113119.8385.68490288.615500.418202.945101.89800HepG2KIF1C
TMCO6ENSG00000113119.8239.16280355.96150-0.573702.639001.82820HepG2LARP4
TMCO6ENSG00000113119.8273.13180427.84310-0.647503.609202.89680HepG2MATR3
TMCO6ENSG00000113119.8216.01920353.02620-0.708604.898403.84250HepG2MSI2
TMCO6ENSG00000113119.8241.52810437.92560-0.858506.256005.32000HepG2NCBP2
TMCO6ENSG00000113119.8374.23330197.842000.919506.733005.59350HepG2NSUN2
TMCO6ENSG00000113119.8150.56430235.50060-0.645402.275201.48470HepG2PABPC1
TMCO6ENSG00000113119.8245.97090377.95100-0.619705.026104.24520HepG2PCBP1
TMCO6ENSG00000113119.851.85050162.03730-1.643904.830803.79590HepG2PRPF8
TMCO6ENSG00000113119.8204.08650384.57260-0.914109.255308.37180HepG2PTBP1
TMCO6ENSG00000113119.8279.05860375.39650-0.427802.154501.61960HepG2PUF60
TMCO6ENSG00000113119.8288.82970398.50920-0.464403.292702.65740HepG2PUM1
TMCO6ENSG00000113119.8129.50520244.15300-0.914803.463502.67680HepG2RAVER1
TMCO6ENSG00000113119.8182.18950483.09820-1.4069020.3753019.23510HepG2RBM22
TMCO6ENSG00000113119.8275.97240378.00950-0.453902.544601.89510HepG2RBM25
TMCO6ENSG00000113119.8381.49100226.253300.753605.052804.16690HepG2RPLP0
TMCO6ENSG00000113119.8117.49210190.07350-0.694003.071602.42860HepG2RPS19
TMCO6ENSG00000113119.8204.88060283.60280-0.469102.093301.39160HepG2RPS2
TMCO6ENSG00000113119.8374.53090258.729700.533502.409801.66080HepG2RPS3A
TMCO6ENSG00000113119.879.04810160.27160-1.019702.883302.08290HepG2RRP9
TMCO6ENSG00000113119.8117.86720190.79320-0.694802.949601.97510HepG2SERBP1
TMCO6ENSG00000113119.8223.95380465.28450-1.054908.726007.47320HepG2SF3A3
TMCO6ENSG00000113119.8269.70270400.40160-0.570104.138903.43900HepG2SF3B4
TMCO6ENSG00000113119.8298.22830545.62430-0.8715011.7250010.88460HepG2SRFBP1
TMCO6ENSG00000113119.8190.25450417.92770-1.1353013.1418012.27650HepG2SRSF1
TMCO6ENSG00000113119.8328.36800206.317000.670404.656203.78820HepG2SRSF7
TMCO6ENSG00000113119.8256.99570340.00230-0.403802.434601.90980HepG2SRSF9
TMCO6ENSG00000113119.8617.31420473.700800.381903.134802.59680HepG2SSB
TMCO6ENSG00000113119.8319.33900421.53350-0.400602.545601.94480HepG2SUCLG1
TMCO6ENSG00000113119.8201.61090373.17670-0.888306.147005.22750HepG2U2AF1
TMCO6ENSG00000113119.8327.26820412.63810-0.334401.899801.30270HepG2UPF1
TMCO6ENSG00000113119.8308.36150398.38290-0.369502.170701.62660HepG2UTP3
TMCO6ENSG00000113119.8170.14000268.53790-0.658402.859001.78440HepG2XRCC6
TMCO6ENSG00000113119.8311.25850453.82020-0.544005.099504.41320HepG2ZNF622
TMCO6ENSG00000113119.8380.31480515.47070-0.438702.703102.05730K562AKAP8L
TMCO6ENSG00000113119.8303.12050494.82400-0.707004.907104.16520K562AQR
TMCO6ENSG00000113119.8629.15730488.388300.365302.714801.61820K562CPEB4
TMCO6ENSG00000113119.8302.05520505.38340-0.742608.359107.30720K562DDX47
TMCO6ENSG00000113119.8167.55040246.86320-0.559102.723501.81790K562EFTUD2
TMCO6ENSG00000113119.8149.44480274.45360-0.876903.569102.41110K562EIF3A
TMCO6ENSG00000113119.8133.25180264.26840-0.987805.887804.29770K562EIF3D
TMCO6ENSG00000113119.8130.69330194.53390-0.573802.633301.85500K562EIF3G
TMCO6ENSG00000113119.8201.74130289.28650-0.520002.989102.36390K562FXR1
TMCO6ENSG00000113119.8101.94110201.08130-0.980004.734303.75270K562G3BP2
TMCO6ENSG00000113119.8590.87470456.723300.371402.411301.43270K562HNRNPL
TMCO6ENSG00000113119.8602.04220443.594700.440503.630902.60800K562HNRNPU
TMCO6ENSG00000113119.8466.49390612.83030-0.393602.527601.66520K562MBNL1
TMCO6ENSG00000113119.8546.97440421.951400.374302.986002.21460K562NSUN2
TMCO6ENSG00000113119.8138.61610234.58120-0.759003.922702.75390K562PCBP2
TMCO6ENSG00000113119.893.21980240.22750-1.365709.224707.84980K562PRPF8
TMCO6ENSG00000113119.8378.22860278.089500.443602.121901.34040K562PSIP1
TMCO6ENSG00000113119.8177.93060256.18210-0.525902.768602.10400K562PTBP1
TMCO6ENSG00000113119.8406.86360687.47290-0.756807.252305.92820K562PUF60
TMCO6ENSG00000113119.8106.12620191.83200-0.854102.958201.48480K562RAVER1
TMCO6ENSG00000113119.8393.38580498.09390-0.340501.997201.47830K562RBM15
TMCO6ENSG00000113119.8123.64920190.61190-0.624402.585601.30940K562RBM25
TMCO6ENSG00000113119.8134.42250244.66440-0.864004.629403.57150K562RPS19
TMCO6ENSG00000113119.8127.22850208.98070-0.715903.871502.85470K562SF3B4
TMCO6ENSG00000113119.8230.77980448.03930-0.957102.708801.49690K562SNRNP200
TMCO6ENSG00000113119.8343.58000240.636700.513702.605901.62070K562SRFBP1
TMCO6ENSG00000113119.8128.05080201.21670-0.652003.230102.36390K562U2AF2
TMCO6ENSG00000113119.8294.89900398.07380-0.432803.166102.26560K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMCO6 is not available on ENCORE database.





1 RBPs can affect the splicing of TMCO6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMCO6ENSG00000113119.8chr5+140021454140021638140020890140021365140021899140022004-0.294000.005740.07740excludedK562HNRNPC
MXETMCO6ENSG00000113119.8chr5+1400218991400220041400221701400222561400212491400213651400225091400226260.141000.005990.080181includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMCO6 is not avaliable on ENCORE database.