SNX6

General Information

Gene Name       : SNX6
Gene ID             : ENSG00000129515.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX6ENSG00000129515.1857.8155.3656.59ENCSR000AEF
HepG2SNX6ENSG00000129515.1885.47173.35129.41ENCSR985KAT
K562SNX6ENSG00000129515.1854.0157.5155.76ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX6 RNA is bound by 22 proteins.  







eCLIP assay for SNX6 is not avaliable on ENCORE database.





22 proteins are bound to SNX6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr143503207635032131-3'-UTR,intron-Distal3.717533.25175K562YBX3
chr143507258235072675-3'-UTR,5'-UTR,CDS,intron-Distal4.9419924.03603HepG2BCLAF1
chr143507262335072679-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.925215.30069HepG2AQR
chr143507255335072582-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.461597.95223HepG2BCLAF1
chr143507258535072660-3'-UTR,5'-UTR,CDS,intron-Distal3.375217.67372HepG2GRWD1
chr143506676135066852-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.190924.03389K562ZNF622
chr143506225535062321-3'-UTR,CDS,intron-Distal3.231589.80919HepG2BCLAF1
chr143505543335055482-3'-UTR,CDS,intron-Distal,intron-Proximal3.111847.70439HepG2BCLAF1
chr143503185435031906-3'-UTR,intron-Distal,intron-Proximal3.217143.82357HepG2TIAL1
chr143506224935062345-3'-UTR,CDS,intron-Distal,intron-Proximal3.833494.19073HepG2ZNF800
chr143503164635031655-3'-UTR,intron-Distal3.878493.25175K562YBX3
chr143503208535032197-3'-UTR,intron-Distal3.955984.34898HepG2IGF2BP1
chr143503165535031682-3'-UTR,intron-Distal4.180534.98640K562YBX3
chr143505549135055508-3'-UTR,CDS,intron-Distal3.257164.34695HepG2BCLAF1
chr143503234635032384-3'-UTR,CDS,intron-Distal,intron-Proximal3.164683.26275K562BUD13
chr143506680535066852-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.8342410.19430HepG2BCLAF1
chr143507728235077326-5'-UTR,CDS,intron-Distal3.254043.80299HepG2GRWD1
chr143509914935099218-5'-UTR,CDS,intron-Distal,intron-Proximal3.055906.08397HepG2SUPV3L1
chr143509915735099233-5'-UTR,CDS,intron-Distal,intron-Proximal5.0487511.08778HepG2AQR
chr143509923435099274-5'-UTR,intron-Distal,intron-Proximal4.314017.60779HepG2AQR
chr143507884735078949-5'-UTR,CDS,intron-Distal,intron-Proximal4.329496.28704HepG2UCHL5
chr143509923635099280-5'-UTR,intron-Distal,intron-Proximal3.158643.13705K562BUD13
chr143509910635099292-5'-UTR,CDS,intron-Distal,intron-Proximal3.1456614.42871HepG2BUD13
chr143509924535099317-5'-UTR,intron-Distal,intron-Proximal4.025969.25476HepG2PRPF8
chr143509887535098975-5'-UTR,intron-Distal,intron-Proximal3.172974.48153HepG2HNRNPK
chr143509916835099221-5'-UTR,intron-Distal,intron-Proximal3.9215016.47957HepG2PRPF8
chr143509906435099120-5'-UTR,CDS,intron-Distal,intron-Proximal3.794587.26133HepG2PRPF8
chr143509909235099162-5'-UTR,CDS,intron-Distal,intron-Proximal3.234035.93420HepG2GRWD1
chr143507484035074904-5'-UTR,CDS,intron-Distal,intron-Proximal4.073758.04154K562YBX3
chr143509911535099179-5'-UTR,CDS,intron-Distal,intron-Proximal3.359195.15987HepG2SRSF1
chr143507490435074924-5'-UTR,CDS,intron-Distal,intron-Proximal3.411924.74241K562YBX3
chr143507886635078929-5'-UTR,CDS,intron-Distal3.513064.22563K562UCHL5
chr143509910635099165-5'-UTR,CDS,intron-Distal,intron-Proximal4.169133.07274HepG2SRSF9
chr143507884835078930-5'-UTR,CDS,intron-Distal3.3589014.59078HepG2BCLAF1
chr143509928135099357-5'-UTR,CDS,intron-Distal,intron-Proximal3.304933.28035HepG2NCBP2
chr143509916335099240-5'-UTR,intron-Distal,intron-Proximal5.8367617.48131K562AQR
chr143509911235099163-5'-UTR,CDS,intron-Distal,intron-Proximal5.063408.81962K562DDX3X
chr143507884335078949-5'-UTR,CDS,intron-Distal,intron-Proximal3.194597.60655K562DDX3X
chr143509914435099163-5'-UTR,CDS,intron-Distal,intron-Proximal3.734825.35619K562AQR
chr143507480235074902-5'-UTR,CDS,intron-Distal,intron-Proximal3.241289.22245HepG2GRWD1
chr143509925635099317-5'-UTR,intron-Distal,intron-Proximal4.892345.17615K562AQR
chr143509927435099318-5'-UTR,CDS,intron-Distal,intron-Proximal4.878839.68645HepG2AQR
chr143509260335092655-intron-Distal4.219916.08171HepG2QKI
chr143509896335099110-intron-Distal,intron-Proximal6.345059.47433HepG2PCBP1
chr143509251535092588-intron-Distal4.096956.17312HepG2PCBP2
chr143509252535092603-intron-Distal3.734769.27682HepG2QKI
chr143504778535047838-intron-Distal3.960533.21162HepG2HNRNPC
chr143504227635042352-intron-Distal5.018378.35890HepG2ILF3
chr143508656935086679-intron-Distal3.118253.58557HepG2ILF3
chr143504690035047014-intron-Distal4.5628310.81726HepG2QKI
chr143509763035097677-intron-Distal4.108113.71997HepG2ILF3
chr143504241735042487-intron-Distal4.448855.02158HepG2ILF3
chr143504276335042785-intron-Distal3.399233.80809HepG2ILF3
chr143504273735042763-intron-Distal3.509844.27938HepG2ILF3
chr143509008535090150-intron-Distal3.9828710.24917HepG2HNRNPC
chr143504349635043547-intron-Distal3.764985.47956HepG2ILF3
chr143509897135099073-intron-Distal,intron-Proximal3.995625.99968K562PRPF8
chr143509901135099078-intron-Distal,intron-Proximal3.407393.99908K562BUD13
chr143509265535092712-intron-Distal4.965324.85866HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX6 is not available on ENCORE database.

  • 76 RBPs can affect the levels of SNX6.  








The Knockdown/knockout RNA-Seq assay for SNX6 is not available on ENCORE database.





76 RBPs can affect the gene expression of SNX6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX6ENSG00000129515.143304.021402791.490600.243103.829103.13500HepG2ACO1
SNX6ENSG00000129515.141716.628002470.31940-0.525104.151603.07020HepG2BCLAF1
SNX6ENSG00000129515.142166.212103069.15380-0.502706.206105.35140HepG2BOP1
SNX6ENSG00000129515.142020.433402817.69030-0.479805.154704.24210HepG2CPSF6
SNX6ENSG00000129515.144982.910104061.616000.294802.889802.23560HepG2CELF1
SNX6ENSG00000129515.143143.812504367.78450-0.4744014.2358012.77510HepG2DAZAP1
SNX6ENSG00000129515.141338.076102516.25150-0.9111015.7692014.30890HepG2DDX21
SNX6ENSG00000129515.143066.977402461.375600.317303.287902.28840HepG2DDX24
SNX6ENSG00000129515.143949.065505300.86320-0.424703.923803.19010HepG2DDX3X
SNX6ENSG00000129515.143713.358904553.16870-0.294101.848001.33270HepG2DDX6
SNX6ENSG00000129515.142012.451302600.55450-0.369903.719502.59000HepG2DHX30
SNX6ENSG00000129515.142167.553702696.28840-0.314904.252003.39630HepG2DNAJC21
SNX6ENSG00000129515.142143.892602672.42100-0.317906.384205.45250HepG2DNAJC2
SNX6ENSG00000129515.142991.701504377.45110-0.549106.197705.32890HepG2EIF2S1
SNX6ENSG00000129515.142991.733702375.546100.332603.583702.37390HepG2EIF3G
SNX6ENSG00000129515.143934.418104837.78160-0.298201.870601.34110HepG2EIF4A3
SNX6ENSG00000129515.143308.706102727.767300.278402.671001.85090HepG2EWSR1
SNX6ENSG00000129515.141947.197202397.38880-0.300102.798501.64920HepG2FASTKD2
SNX6ENSG00000129515.141428.987802326.41530-0.703106.046704.24360HepG2FKBP4
SNX6ENSG00000129515.141809.736702477.16790-0.452905.288304.21110HepG2FUBP3
SNX6ENSG00000129515.144040.486604880.56340-0.272501.914201.33460HepG2FXR1
SNX6ENSG00000129515.142352.357804527.73040-0.9447015.0537013.56450HepG2G3BP1
SNX6ENSG00000129515.142444.455603194.18080-0.385902.983202.32170HepG2GPKOW
SNX6ENSG00000129515.142226.793803027.83470-0.443305.220504.29160HepG2HNRNPC
SNX6ENSG00000129515.142578.686402999.90600-0.218302.229201.58090HepG2HNRNPF
SNX6ENSG00000129515.143529.375903978.88430-0.173002.893402.20690HepG2HNRNPL
SNX6ENSG00000129515.142169.602103048.25570-0.490605.167604.33530HepG2HNRNPLL
SNX6ENSG00000129515.142272.955703007.81790-0.404108.338707.32660HepG2HNRNPU
SNX6ENSG00000129515.142534.166704602.44300-0.8609014.2485012.85140HepG2IGF2BP2
SNX6ENSG00000129515.142438.993603072.38970-0.333108.079106.89470HepG2ILF2
SNX6ENSG00000129515.143433.814804882.26480-0.507705.275904.37620HepG2MAGOH
SNX6ENSG00000129515.141411.572702703.49520-0.9375011.7563010.20650HepG2MSI2
SNX6ENSG00000129515.143040.901705025.40450-0.724709.588908.45000HepG2NCBP2
SNX6ENSG00000129515.143722.251104331.05670-0.218502.062701.40150HepG2NOL12
SNX6ENSG00000129515.143290.154802702.782300.283602.284501.60220HepG2NSUN2
SNX6ENSG00000129515.142915.560204475.78800-0.618407.392706.22560HepG2PABPC4
SNX6ENSG00000129515.142848.628204470.25210-0.6501022.0144020.56820HepG2PCBP1
SNX6ENSG00000129515.143038.362702454.606400.307704.787003.80090HepG2PRPF4
SNX6ENSG00000129515.143069.179304548.55770-0.5676017.0981015.96010HepG2PTBP1
SNX6ENSG00000129515.143342.571204134.21990-0.306703.324002.67930HepG2PUF60
SNX6ENSG00000129515.143687.346504388.47810-0.251105.247704.48430HepG2PUM1
SNX6ENSG00000129515.142530.718402843.31130-0.168001.980601.44010HepG2PUS1
SNX6ENSG00000129515.143091.264604926.39410-0.6723017.4790016.10330HepG2QKI
SNX6ENSG00000129515.144221.677502971.819600.506402.675201.98090HepG2RAVER1
SNX6ENSG00000129515.142592.889003402.76260-0.392105.304704.16380HepG2RBM15
SNX6ENSG00000129515.143114.460904339.33270-0.4785010.116609.26510HepG2RBM22
SNX6ENSG00000129515.145239.958504470.946100.228902.019201.43720HepG2RBM25
SNX6ENSG00000129515.144335.060705062.18360-0.223703.420402.83220HepG2NELFE
SNX6ENSG00000129515.141709.331802170.61960-0.344703.429402.75410HepG2RPS19
SNX6ENSG00000129515.142019.443602678.60620-0.407509.052607.99290HepG2SAFB2
SNX6ENSG00000129515.142309.080203017.23410-0.385903.828103.00940HepG2SF3B1
SNX6ENSG00000129515.143572.923304735.79880-0.406509.558208.55890HepG2SF3B4
SNX6ENSG00000129515.142747.968503123.72670-0.184902.878002.22290HepG2SMN1
SNX6ENSG00000129515.141954.835403028.02050-0.631305.304303.95120HepG2SMNDC1
SNX6ENSG00000129515.146461.748304901.139300.3987011.6883010.84860HepG2SRFBP1
SNX6ENSG00000129515.143142.055104081.72560-0.377508.305607.29700HepG2SRSF5
SNX6ENSG00000129515.143423.309504021.40320-0.232303.780403.15740HepG2SRSF9
SNX6ENSG00000129515.143781.399504442.85020-0.232602.936802.36120HepG2TAF15
SNX6ENSG00000129515.142149.088602970.81570-0.467105.210504.26020HepG2TARDBP
SNX6ENSG00000129515.141973.952302922.72960-0.5662010.435409.57200HepG2TIAL1
SNX6ENSG00000129515.141770.024402948.77880-0.7363024.5098023.03550HepG2TRIM56
SNX6ENSG00000129515.143276.299404038.66560-0.301802.999302.08480HepG2TUFM
SNX6ENSG00000129515.144457.962902857.062100.641809.852608.65540HepG2U2AF1
SNX6ENSG00000129515.142380.735502747.31320-0.206602.644301.95870HepG2UPF1
SNX6ENSG00000129515.143252.158302652.425100.294004.845304.08910HepG2UTP3
SNX6ENSG00000129515.141460.405302240.59930-0.617508.364607.43300K562AQR
SNX6ENSG00000129515.14905.332401186.69640-0.390403.582202.37710K562DDX3X
SNX6ENSG00000129515.142336.025702034.446900.199302.150301.56410K562DDX47
SNX6ENSG00000129515.142182.830201799.241500.278703.193202.24370K562DKC1
SNX6ENSG00000129515.14822.066701056.70780-0.362202.334901.49730K562EFTUD2
SNX6ENSG00000129515.142004.389701403.536200.514003.740702.89040K562G3BP2
SNX6ENSG00000129515.14823.647201157.11060-0.490404.889204.11780K562HNRNPC
SNX6ENSG00000129515.142810.371002001.735900.489405.536404.42880K562HSPD1
SNX6ENSG00000129515.141258.629701686.98720-0.422602.876001.82530K562IGF2BP2
SNX6ENSG00000129515.142234.763501774.442100.332703.084902.21000K562KIF1C
SNX6ENSG00000129515.141181.335501401.45250-0.246502.602301.81690K562MTPAP
SNX6ENSG00000129515.141896.543001393.316200.444702.908001.99960K562NAA15
SNX6ENSG00000129515.141325.902001557.18900-0.232003.047502.26810K562NSUN2
SNX6ENSG00000129515.141392.395101723.01390-0.307402.826302.15580K562PTBP1
SNX6ENSG00000129515.142018.311401658.219800.283402.000801.52450K562PUS1
SNX6ENSG00000129515.141232.806301652.45390-0.422704.026602.99430K562RBM22
SNX6ENSG00000129515.14754.41260946.40540-0.327102.486401.55100K562RCC2
SNX6ENSG00000129515.141030.956001459.87160-0.501906.558405.20310K562SF3B4
SNX6ENSG00000129515.14613.25170897.18030-0.548904.834803.36520K562SRFBP1
SNX6ENSG00000129515.141186.99990949.537200.321902.826701.99780K562SYNCRIP
SNX6ENSG00000129515.14691.829901059.95790-0.615506.393204.82000K562TRIM56
SNX6ENSG00000129515.141736.990101360.978400.351802.337001.34350K562U2AF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX6 is not available on ENCORE database.





9 RBPs can affect the splicing of SNX6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX6ENSG00000129515.14chr14-350772353507734635074692350749233507884335078948-0.116000.000000.00001excludedHepG2U2AF1
SESNX6ENSG00000129515.14chr14-350772353507734635074692350749233507884335078948-0.083000.000040.00300excludedK562FXR1
SESNX6ENSG00000129515.14chr14-350772353507734635074692350749233507884335078948-0.068000.000050.01795excludedK562MTPAP
SESNX6ENSG00000129515.14chr14-350772353507734635074692350749233507884335078948-0.068000.000130.00468excludedHepG2SRSF1
A3SSSNX6ENSG00000129515.14chr14-3507884335078969350788433507894835099112350991600.073000.000000.00001longerK562AQR
A3SSSNX6ENSG00000129515.14chr14-3507488735074942350748873507492335077235350773650.071000.000000.00000longerK562AQR
MXESNX6ENSG00000129515.14chr14-35037059350372193504496135045048350368913503697735050766350508060.148000.000000.000091includedHepG2FTO
MXESNX6ENSG00000129515.14chr14-35077235350773463507884335078948350748013507492335099112350991600.070000.000040.001731includedK562DROSHA
MXESNX6ENSG00000129515.14chr14-35036891350369773503705935037219350316143503238135044961350450480.103000.001470.042891includedHepG2XRN2
MXESNX6ENSG00000129515.14chr14-3507723535077346350788433507894835074801350749233509911235099160-0.102000.000800.081522includedHepG2XRCC6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX6 is not avaliable on ENCORE database.