SCAND3

General Information

Gene Name       : SCAND3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCAND3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCAND3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCAND3 RNA is bound by 10 proteins.  







eCLIP assay for SCAND3 is not avaliable on ENCORE database.





10 proteins are bound to SCAND3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62855703028557091-intron-Distal3.935447.39881K562TIA1
chr62855810628558142-intron-Distal3.343635.63070K562RBM15
chr62855775028557786-intron-Distal4.390194.82934K562RBM15
chr62858383128583900-intron-Distal3.813553.88359K562MTPAP
chr62855723728557315-intron-Distal3.724047.69253K562RBM15
chr62856085928560964-intron-Distal3.7878811.47524K562KHSRP
chr62855745928557507-intron-Distal,intron-Proximal3.997956.50633K562RBM15
chr62858352328583573-intron-Distal3.055646.12222K562RBM15
chr62858088328580949-intron-Distal3.260443.50238K562CPSF6
chr62858391428583936-intron-Distal3.387363.63681K562RBM15
chr62858357328583631-intron-Distal3.8269110.11511K562RBM15
chr62858088028580926-intron-Distal4.099019.06934K562KHSRP
chr62856098528561021-intron-Distal3.380729.55730K562KHSRP
chr62857828828578347-intron-Distal5.8170816.57054K562PTBP1
chr62856096428560985-intron-Distal3.989518.11138K562KHSRP
chr62858379428583866-intron-Distal3.115798.16665K562RBM15
chr62855793528557982-intron-Distal3.671315.60474K562RBM15
chr62858151528581612-intron-Distal3.594795.59191K562CPSF6
chr62856261028562713-intron-Distal4.4207517.31033K562QKI
chr62858389228583977-intron-Distal3.531725.23852K562DDX3X
chr62855572028555810-intron-Distal,intron-Proximal4.144587.16955K562UCHL5
chr62855233828552400-intron-Distal3.605533.01412K562SAFB2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCAND3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCAND3 is not available on ENCORE database.

  • 81 RBPs can affect the levels of SCAND3.  








The Knockdown/knockout RNA-Seq assay for SCAND3 is not available on ENCORE database.





81 RBPs can affect the gene expression of SCAND3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCAND3ENSG00000232040.2165.4761083.060800.994304.633903.88300HepG2BOP1
SCAND3ENSG00000232040.2196.47230125.177300.650303.389802.66690HepG2CKAP4
SCAND3ENSG00000232040.2214.67830136.037200.658102.244801.56050HepG2CNOT7
SCAND3ENSG00000232040.2123.6130076.256500.696802.037701.43770HepG2CPSF6
SCAND3ENSG00000232040.2179.07860108.266200.725902.973402.27300HepG2DDX21
SCAND3ENSG00000232040.2189.65330105.865400.841004.005302.89350HepG2DDX24
SCAND3ENSG00000232040.2362.96630227.508300.673803.074802.42020HepG2DDX3X
SCAND3ENSG00000232040.2241.40650164.603700.552402.953202.09290HepG2EIF4G1
SCAND3ENSG00000232040.2330.33170233.023500.503303.064802.43700HepG2ETF1
SCAND3ENSG00000232040.2188.50360122.345600.623502.672701.85240HepG2EWSR1
SCAND3ENSG00000232040.277.87890128.80460-0.725902.283901.69170HepG2HNRNPA1
SCAND3ENSG00000232040.299.02950145.37160-0.553802.314401.63670HepG2ILF2
SCAND3ENSG00000232040.2204.72500129.336000.662502.506401.51830HepG2PCBP2
SCAND3ENSG00000232040.2226.83280167.647500.436102.114201.58190HepG2PUM1
SCAND3ENSG00000232040.2194.21120127.513800.606903.012902.37680HepG2PUS1
SCAND3ENSG00000232040.2343.01770194.765800.816406.546405.83060HepG2RBM22
SCAND3ENSG00000232040.2208.90460136.464600.614202.242601.52240HepG2RPS3A
SCAND3ENSG00000232040.271.56430126.74360-0.824603.313502.61950HepG2SAFB2
SCAND3ENSG00000232040.2188.8856081.661001.209706.675705.61990HepG2SF3B1
SCAND3ENSG00000232040.297.93210147.81450-0.593902.402201.79720HepG2SMN1
SCAND3ENSG00000232040.2216.4690090.860901.252305.929104.77970HepG2SNRNP70
SCAND3ENSG00000232040.2211.27710155.932200.438101.910601.37740HepG2SRSF5
SCAND3ENSG00000232040.280.15070139.51910-0.799703.525502.90600HepG2TRIM56
SCAND3ENSG00000232040.2359.32450102.579401.8084019.3048017.59580HepG2U2AF1
SCAND3ENSG00000232040.2625.179201878.31510-1.5871011.4112010.35320K562AGGF1
SCAND3ENSG00000232040.2638.183801954.38810-1.6147010.638609.24780K562AKAP8L
SCAND3ENSG00000232040.21059.232602050.46510-0.952905.777504.39950K562ATP5C1
SCAND3ENSG00000232040.21050.00980672.073100.643602.077701.32740K562BOP1
SCAND3ENSG00000232040.21700.937901345.567900.338002.776601.49250K562CIRBP
SCAND3ENSG00000232040.22231.82520714.563701.6430028.8069026.28110K562CPSF6
SCAND3ENSG00000232040.21443.434802203.77130-0.610503.413701.78430K562DDX19B
SCAND3ENSG00000232040.2455.00720702.74280-0.627102.960501.88040K562DDX3X
SCAND3ENSG00000232040.2852.229201300.94200-0.6102011.032809.82880K562DDX47
SCAND3ENSG00000232040.21325.965202103.58770-0.665803.048902.12300K562DKC1
SCAND3ENSG00000232040.2604.00780901.05170-0.577003.636902.14250K562EEF2
SCAND3ENSG00000232040.21793.746301174.200700.6112012.0230010.67760K562EIF2S2
SCAND3ENSG00000232040.2619.80730932.42940-0.589204.014402.74030K562EIF3D
SCAND3ENSG00000232040.2782.449401374.52350-0.812905.301904.21540K562EIF3G
SCAND3ENSG00000232040.21304.25520734.140500.8290012.1184010.35780K562EIF4A3
SCAND3ENSG00000232040.2482.01560640.79670-0.410802.628401.37410K562EWSR1
SCAND3ENSG00000232040.2379.28730906.22080-1.2566020.9156018.35850K562FIP1L1
SCAND3ENSG00000232040.21281.89040727.134500.817903.753802.75360K562FMR1
SCAND3ENSG00000232040.2958.23320616.348000.636505.765604.39310K562FTO
SCAND3ENSG00000232040.2860.037401200.30660-0.480904.992002.99960K562G3BP1
SCAND3ENSG00000232040.21380.99610781.871000.820606.719005.51230K562G3BP2
SCAND3ENSG00000232040.2851.08380682.198200.319002.055401.36730K562GPKOW
SCAND3ENSG00000232040.2658.720301003.97290-0.608007.336105.66160K562HNRNPA1
SCAND3ENSG00000232040.2646.767501734.52560-1.423204.575402.88110K562HNRNPA2B1
SCAND3ENSG00000232040.21212.88460698.051300.7969011.9561010.78740K562HNRNPC
SCAND3ENSG00000232040.2305.182201111.74120-1.8651039.5260036.57840K562HNRNPU
SCAND3ENSG00000232040.2867.487001255.49100-0.533303.918402.61070K562IGF2BP2
SCAND3ENSG00000232040.21176.539202074.38830-0.818104.692103.56620K562KIF1C
SCAND3ENSG00000232040.21039.00940582.602000.834507.245305.65120K562KRR1
SCAND3ENSG00000232040.21612.855901319.451700.289602.407001.61990K562MAGOH
SCAND3ENSG00000232040.21214.517301985.46150-0.709102.378301.40760K562MAK16
SCAND3ENSG00000232040.21327.906102323.79780-0.807304.666203.42130K562MBNL1
SCAND3ENSG00000232040.2892.32820665.916000.422103.307302.34860K562METAP2
SCAND3ENSG00000232040.21440.11510902.150500.6746014.6945013.00500K562MTPAP
SCAND3ENSG00000232040.2762.686701628.78810-1.094604.477503.27080K562NAA15
SCAND3ENSG00000232040.22795.206002159.963700.371804.171502.31710K562NOL12
SCAND3ENSG00000232040.21422.727801002.302600.5052010.739509.40190K562NSUN2
SCAND3ENSG00000232040.2745.984601518.24290-1.025202.883901.86780K562PABPN1
SCAND3ENSG00000232040.2948.046001289.76970-0.444104.806802.98620K562PCBP1
SCAND3ENSG00000232040.2706.996301028.78190-0.541205.139003.96450K562PPIG
SCAND3ENSG00000232040.2893.134301806.02850-1.015902.835801.37050K562PPP1R8
SCAND3ENSG00000232040.2587.53580847.28430-0.528202.551301.83100K562PRPF8
SCAND3ENSG00000232040.2926.063701281.93150-0.469105.270004.37860K562PTBP1
SCAND3ENSG00000232040.22646.926302154.825000.296602.146501.42890K562PUF60
SCAND3ENSG00000232040.23069.107502291.441000.421507.070405.30880K562PUM1
SCAND3ENSG00000232040.22762.001302245.723400.298403.157102.13360K562PUM2
SCAND3ENSG00000232040.2782.991101938.81690-1.308107.356906.51710K562PUS1
SCAND3ENSG00000232040.2723.261301888.58760-1.384709.586208.50670K562RBM15
SCAND3ENSG00000232040.2853.169501229.20830-0.526805.425604.20260K562RBM22
SCAND3ENSG00000232040.2321.55580742.82510-1.208003.491401.97710K562RBM25
SCAND3ENSG00000232040.2790.683501867.98320-1.240303.570601.76530K562RBM39
SCAND3ENSG00000232040.2471.24200863.18230-0.873206.112404.89150K562RPS19
SCAND3ENSG00000232040.2545.059101389.06170-1.349603.538402.12950K562SF1
SCAND3ENSG00000232040.21249.55460989.117500.337103.735602.79570K562SF3A3
SCAND3ENSG00000232040.2378.89010814.16000-1.103503.408002.45590K562SF3B4
SCAND3ENSG00000232040.21852.011801262.223600.553004.080802.04610K562SND1
SCAND3ENSG00000232040.21463.22560956.184200.6137010.664408.35490K562SRSF7
SCAND3ENSG00000232040.21143.62940820.582900.478803.781502.57750K562SUPV3L1
SCAND3ENSG00000232040.2909.236801403.85940-0.626705.185202.78470K562TUFM
SCAND3ENSG00000232040.2405.73480759.18220-0.903902.862101.74880K562U2AF1
SCAND3ENSG00000232040.2322.73300783.64630-1.279904.354903.35270K562U2AF2
SCAND3ENSG00000232040.23060.756102429.053100.333404.276302.53050K562UBE2L3
SCAND3ENSG00000232040.22098.682801062.768000.9816034.7477032.54140K562UPF1
SCAND3ENSG00000232040.21521.58050909.368300.7425012.2488010.36050K562WDR3
SCAND3ENSG00000232040.21662.472902068.47800-0.315202.999701.65200K562WRN
SCAND3ENSG00000232040.22455.349101967.070600.319802.795001.92620K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCAND3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SCAND3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SCAND3 is not avaliable on ENCORE database.