SAMSN1

General Information

Gene Name       : SAMSN1
Gene ID             : ENSG00000155307.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SAMSN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SAMSN1ENSG00000155307.1870.5457.2363.89ENCSR000AEF
HepG2SAMSN1ENSG00000155307.180.000.020.01ENCSR985KAT
K562SAMSN1ENSG00000155307.18124.32140.76132.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SAMSN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SAMSN1 RNA is bound by 33 proteins.  







eCLIP assay for SAMSN1 is not avaliable on ENCORE database.





33 proteins are bound to SAMSN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr211585795515858029-3'-UTR,intron-Distal3.575035.59191K562CPSF6
chr211585756215857600-3'-UTR,intron-Distal5.0641634.90406K562PUM2
chr211585798815858032-3'-UTR,intron-Distal3.127235.27768K562DDX6
chr211585804415858090-3'-UTR,intron-Distal4.6343133.68584K562PUM2
chr211585760015857646-3'-UTR,intron-Distal4.6142340.98376K562PUM2
chr211585756115857645-3'-UTR,intron-Distal3.628269.05817K562DDX6
chr211585797715858032-3'-UTR,intron-Distal3.7779535.37393K562PUM2
chr211585809015858141-3'-UTR,intron-Distal3.8301721.75808K562PUM2
chr211585796315858022-3'-UTR,intron-Distal4.113763.07287K562TIA1
chr211585756815857642-3'-UTR,intron-Distal4.162925.95365K562ZC3H11A
chr211585797115858026-3'-UTR,intron-Distal4.044754.20872K562IGF2BP1
chr211585781015857855-3'-UTR,intron-Distal3.238303.59190K562TIA1
chr211585764615857699-3'-UTR,intron-Distal4.0086727.21857K562PUM2
chr211585756015857598-3'-UTR,intron-Distal5.124499.39648K562PABPC4
chr211585761615857693-3'-UTR,intron-Distal5.016219.04193K562TIA1
chr211585781315857864-3'-UTR,intron-Distal3.188994.58130K562ZC3H11A
chr211591852515918633-5'-UTR,CDS,intron-Distal3.0296711.73000K562DDX3X
chr211587077815870822-CDS,intron-Distal3.5140411.77736K562UCHL5
chr211587086115870913-CDS,intron-Distal3.2685412.26819K562UCHL5
chr211588263815882700-CDS,intron-Distal3.2492210.35530K562ZNF622
chr211585838815858416-CDS,intron-Distal3.775886.74842K562ZNF622
chr211587289815872939-CDS,intron-Distal,intron-Proximal3.8520418.97774K562UCHL5
chr211588475915884766-CDS,intron-Distal,intron-Proximal5.1973713.75908K562AQR
chr211587089515870912-CDS,intron-Distal3.810658.04012K562ZNF622
chr211588921015889289-CDS,intron-Distal,intron-Proximal3.5308817.48702K562UCHL5
chr211588484815884895-CDS,intron-Distal,intron-Proximal3.190317.48216K562GRWD1
chr211587298315873029-CDS,intron-Distal,intron-Proximal3.420857.55111K562UCHL5
chr211588276615882817-CDS,intron-Distal,intron-Proximal3.668935.83621K562AQR
chr211587293915872974-CDS,intron-Distal,intron-Proximal3.8964217.98372K562UCHL5
chr211588484515884904-CDS,intron-Distal,intron-Proximal3.8154114.11072K562SF3B4
chr211588921215889237-CDS,intron-Distal,intron-Proximal3.089924.01617K562GRWD1
chr211588481215884894-CDS,intron-Distal3.4062320.29973K562UCHL5
chr211587075915870809-CDS,intron-Distal,intron-Proximal4.1436919.36626K562ZNF622
chr211587290715872971-CDS,intron-Distal,intron-Proximal3.3315421.12943K562ZNF622
chr211585841615858434-CDS,intron-Distal3.464368.01252K562ZNF622
chr211587080915870831-CDS,intron-Distal3.125589.17031K562ZNF622
chr211588271115882744-CDS,intron-Distal3.196136.02988K562UCHL5
chr211587284815872895-CDS,intron-Distal,intron-Proximal3.9314815.58376K562ZNF622
chr211588472015884789-CDS,intron-Distal,intron-Proximal3.854655.29694K562EFTUD2
chr211587076115870778-CDS,intron-Distal,intron-Proximal3.562029.97367K562UCHL5
chr211589338715893481-CDS,intron-Distal,intron-Proximal3.3603515.59865K562AQR
chr211588277315882781-CDS,intron-Distal3.305327.08969K562ZNF622
chr211587284915872898-CDS,intron-Distal,intron-Proximal3.4593615.62797K562UCHL5
chr211589346915893496-CDS,intron-Distal,intron-Proximal3.440244.72836K562ZNF800
chr211588921615889292-CDS,intron-Distal4.1844216.78296K562ZNF622
chr211587280515872835-intron-Distal,intron-Proximal4.904328.30573K562AQR
chr211590438315904400-intron-Distal3.980895.15600K562LIN28B
chr211590440015904413-intron-Distal3.904895.15600K562LIN28B
chr211588469915884759-intron-Distal,intron-Proximal6.5723819.16919K562AQR
chr211587887915878924-intron-Distal5.0930916.12575K562EXOSC5
chr211591372715913749-intron-Distal3.423554.43202K562HNRNPL
chr211590441315904436-intron-Distal3.446573.36366K562LIN28B
chr211588574615885801-intron-Distal3.2058518.49348K562AGGF1
chr211587960315879637-intron-Distal4.614775.44508K562EXOSC5
chr211586584115865916-intron-Distal5.8459113.16698K562TARDBP
chr211587649615876538-intron-Distal3.961536.71166K562EXOSC5
chr211586019915860267-intron-Distal3.529544.69565K562KHDRBS1
chr211588256615882596-intron-Distal,intron-Proximal3.916119.59600K562AQR
chr211587618615876244-intron-Distal4.185784.24113K562MATR3
chr211587607115876115-intron-Distal4.068453.59909K562EXOSC5
chr211591826115918354-intron-Distal3.671458.98645K562KHSRP
chr211588725315887343-intron-Distal3.779519.11208K562MATR3
chr211587662415876686-intron-Distal3.993075.72424K562MATR3
chr211587904615879057-intron-Distal4.643533.89080K562EXOSC5
chr211588912215889183-intron-Distal,intron-Proximal5.400798.39060K562RBM22
chr211587662015876660-intron-Distal3.118213.14999K562EXOSC5
chr211587930115879365-intron-Distal4.3385011.84791K562EXOSC5
chr211588495915884990-intron-Distal,intron-Proximal4.2604312.30466K562KHSRP
chr211588573015885778-intron-Distal3.7798417.68636K562HNRNPL
chr211588499015885018-intron-Distal,intron-Proximal4.381917.90970K562KHSRP
chr211587737315877418-intron-Distal4.500984.80399K562EXOSC5
chr211588577815885805-intron-Distal4.4217223.70530K562HNRNPL
chr211588718515887220-intron-Distal4.017055.75812K562PTBP1
chr211590468215904789-intron-Distal3.7563314.37840K562QKI
chr211588536215885412-intron-Distal4.5774212.03011K562KHSRP
chr211585864115858738-intron-Distal3.266673.84723K562ILF3
chr211589338915893444-intron-Distal,intron-Proximal4.080594.35635K562PRPF8
chr211589096615891049-intron-Distal3.992548.72690K562KHDRBS1
chr211587651515876559-intron-Distal4.421934.78128K562HNRNPM
chr211591711215917169-intron-Distal3.834453.39089K562KHDRBS1
chr211588905415889107-intron-Distal4.267206.15234K562PRPF8
chr211587055115870609-intron-Distal3.267203.20886K562PRPF8
chr211588501815885111-intron-Distal3.9982111.81268K562KHSRP
chr211591425615914295-intron-Distal3.701428.54900K562PTBP1
chr211587834415878422-intron-Distal4.135444.52011K562HNRNPM
chr211588749315887576-intron-Distal3.704165.63398K562U2AF2
chr211587918415879218-intron-Distal4.212287.61465K562EXOSC5
chr211588429215884380-intron-Distal3.526207.98280K562PTBP1
chr211591822215918255-intron-Distal3.5787211.54274K562KHSRP
chr211588562515885684-intron-Distal3.7518013.82430K562KHSRP
chr211591797315918062-intron-Distal3.6775721.70152K562KHSRP
chr211588939515889432-intron-Distal,intron-Proximal4.680394.40745K562SF3B4
chr211587613615876184-intron-Distal4.385064.48560K562EXOSC5
chr211588613615886198-intron-Distal3.3990216.70843K562QKI
chr211589337215893424-intron-Distal,intron-Proximal3.178885.40698K562KHSRP
chr211588590115885926-intron-Distal3.6535710.29517K562HNRNPL
chr211588771215887740-intron-Distal3.216437.25876K562KHSRP
chr211588573415885806-intron-Distal4.065166.91978K562GTF2F1
chr211588557415885625-intron-Distal3.9769210.80633K562KHSRP
chr211587863615878704-intron-Distal5.2873817.43554K562EXOSC5
chr211590962415909712-intron-Distal3.106573.87218K562SAFB2
chr211588911615889161-intron-Distal,intron-Proximal5.530217.46464K562PRPF8
chr211588011515880160-intron-Distal3.799504.91094K562EXOSC5
chr211586139115861491-intron-Distal3.111325.83938K562KHSRP
chr211591429515914316-intron-Distal4.073038.27898K562PTBP1
chr211588613715886201-intron-Distal3.5166315.85047K562HNRNPL
chr211588259615882617-intron-Distal,intron-Proximal4.214508.79285K562AQR
chr211588776215887816-intron-Distal3.7006912.94500K562KHSRP
chr211587763515877709-intron-Distal6.1799118.99984K562EXOSC5
chr211588649015886606-intron-Distal3.120753.13650K562HNRNPA1
chr211587618915876234-intron-Distal3.325733.14999K562EXOSC5
chr211588674215886828-intron-Distal3.990848.55807K562QKI
chr211591818415918199-intron-Distal4.4224311.44618K562KHSRP
chr211591207815912112-intron-Distal4.258273.89080K562EXOSC5
chr211591806515918137-intron-Distal3.3837110.03681K562KHSRP
chr211587618415876239-intron-Distal4.932877.38107K562HNRNPM
chr211587838415878432-intron-Distal3.820743.33944K562MATR3
chr211587872315878743-intron-Distal4.783296.41216K562EXOSC5
chr211588021215880251-intron-Distal3.667635.02082K562EXOSC5
chr211587988715879915-intron-Distal4.815356.73640K562EXOSC5
chr211587970815879728-intron-Distal4.581215.44433K562EXOSC5
chr211588580515885901-intron-Distal4.2070934.03155K562HNRNPL
chr211589331715893367-intron-Distal3.389803.90146K562KHSRP
chr211589768615897754-intron-Distal4.387678.11145K562KHSRP
chr211590482115904908-intron-Distal3.445365.54602K562QKI
chr211587038715870453-intron-Distal3.708024.44332K562HNRNPA1
chr211587724515877284-intron-Distal4.988767.71416K562EXOSC5
chr211588490415884946-intron-Distal,intron-Proximal5.5357518.10317K562SF3B4
chr211591819915918222-intron-Distal4.0239812.43138K562KHSRP
chr211588774015887762-intron-Distal3.071017.06384K562KHSRP
chr211591367715913727-intron-Distal4.310263.82544K562HNRNPL
chr211587992815879943-intron-Distal3.249733.15041K562EXOSC5
chr211587827415878308-intron-Distal4.0158710.31219K562EXOSC5
chr211588592615885960-intron-Distal4.3620810.73594K562HNRNPL
chr211591277015912818-intron-Distal4.249733.59917K562EXOSC5
chr211589136015891417-intron-Distal4.2586810.50580K562KHDRBS1
chr211588727115887390-intron-Distal3.5188524.81593K562PTBP1
chr211587821415878240-intron-Distal5.375509.02315K562EXOSC5
chr211591813715918184-intron-Distal4.3926016.21812K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SAMSN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SAMSN1 is not available on ENCORE database.

  • 73 RBPs can affect the levels of SAMSN1.  








The Knockdown/knockout RNA-Seq assay for SAMSN1 is not available on ENCORE database.





73 RBPs can affect the gene expression of SAMSN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SAMSN1ENSG00000155307.1320.594501.088804.241304.824203.99170HepG2CKAP4
SAMSN1ENSG00000155307.1313.713501.450503.240902.718801.68790HepG2PCBP2
SAMSN1ENSG00000155307.1312.965500.377405.102502.652201.86050HepG2PRPF8
SAMSN1ENSG00000155307.1375.011101.063106.140708.224907.01470HepG2SF3A3
SAMSN1ENSG00000155307.1327.643400.597105.532706.957206.08650HepG2SF3B4
SAMSN1ENSG00000155307.13707.095301538.38860-1.121406.595004.05680K562ADAR
SAMSN1ENSG00000155307.134266.658504808.11680-0.172402.186701.67220K562AGGF1
SAMSN1ENSG00000155307.132109.266002528.61660-0.261603.122101.50480K562AKAP1
SAMSN1ENSG00000155307.133275.951205003.02490-0.610909.954208.61490K562AKAP8L
SAMSN1ENSG00000155307.135207.249806134.84870-0.236502.558501.36790K562APOBEC3C
SAMSN1ENSG00000155307.131687.719505371.29440-1.6702059.6032057.23220K562AQR
SAMSN1ENSG00000155307.132090.431802629.37080-0.330904.377502.67060K562BCCIP
SAMSN1ENSG00000155307.132038.369202540.96760-0.318005.141103.81730K562BCLAF1
SAMSN1ENSG00000155307.13652.285101506.34550-1.2075019.7055016.13430K562CCAR1
SAMSN1ENSG00000155307.133084.616504914.07000-0.671804.478103.08230K562CNOT7
SAMSN1ENSG00000155307.134272.563305280.47870-0.305604.108102.74200K562CPEB4
SAMSN1ENSG00000155307.131560.621801927.70270-0.304803.613002.38140K562CSTF2
SAMSN1ENSG00000155307.134888.788608549.92560-0.8064024.4061021.94680K562CELF1
SAMSN1ENSG00000155307.131968.523402375.29390-0.271003.128401.83560K562DDX21
SAMSN1ENSG00000155307.132932.373102227.889500.396307.127805.00580K562DDX27
SAMSN1ENSG00000155307.131027.777401686.25020-0.714308.061405.62840K562DHX30
SAMSN1ENSG00000155307.136594.712005383.855000.292604.417903.27440K562DKC1
SAMSN1ENSG00000155307.131114.915101717.08080-0.623003.378501.42320K562DNAJC2
SAMSN1ENSG00000155307.131744.950202676.70190-0.617309.110107.62070K562EIF4A3
SAMSN1ENSG00000155307.134871.403406952.76930-0.5133013.2427011.27120K562EIF4G2
SAMSN1ENSG00000155307.131915.326302403.33590-0.327403.417501.99020K562EXOSC5
SAMSN1ENSG00000155307.133299.220302397.866000.460303.246901.78350K562FUS
SAMSN1ENSG00000155307.131961.269702783.65170-0.5052010.175109.09860K562FXR1
SAMSN1ENSG00000155307.134934.768503558.176100.471703.537302.71610K562G3BP2
SAMSN1ENSG00000155307.132053.845903279.69360-0.6752012.060209.86350K562GLRX3
SAMSN1ENSG00000155307.132051.876102779.22660-0.437702.744601.95330K562GPKOW
SAMSN1ENSG00000155307.132798.960604409.52550-0.655704.136701.93830K562HNRNPA0
SAMSN1ENSG00000155307.132476.668703471.18850-0.487007.316905.64400K562HNRNPA1
SAMSN1ENSG00000155307.131136.575502769.98590-1.2852019.6413018.13340K562HNRNPC
SAMSN1ENSG00000155307.131874.780802473.19820-0.399703.804602.44320K562HNRNPF
SAMSN1ENSG00000155307.134978.257203940.631700.337102.839901.58970K562HNRNPK
SAMSN1ENSG00000155307.133622.392004937.62410-0.446906.251004.60010K562HNRNPL
SAMSN1ENSG00000155307.133630.358902341.845600.632406.522505.00040K562HNRNPM
SAMSN1ENSG00000155307.132238.299403843.87950-0.7802022.2601019.88240K562HNRNPU
SAMSN1ENSG00000155307.137400.071003859.379700.9391021.5271019.48520K562HSPD1
SAMSN1ENSG00000155307.131152.649201521.07810-0.400103.115501.53520K562KHDRBS1
SAMSN1ENSG00000155307.132885.337404146.24340-0.523107.971506.51280K562MAGOH
SAMSN1ENSG00000155307.132854.391404138.01810-0.535808.682206.95030K562MATR3
SAMSN1ENSG00000155307.137423.560505948.068700.319603.547002.49860K562MBNL1
SAMSN1ENSG00000155307.132203.406903448.21440-0.646109.828008.40700K562MTPAP
SAMSN1ENSG00000155307.133404.664702672.892700.349004.361202.80370K562NCBP2
SAMSN1ENSG00000155307.132227.452003831.02710-0.7823027.5155025.55780K562NSUN2
SAMSN1ENSG00000155307.132413.838904720.99100-0.967809.936907.60600K562PABPC1
SAMSN1ENSG00000155307.135185.321307144.23960-0.462308.598206.32770K562PNPT1
SAMSN1ENSG00000155307.134156.147503232.127700.362703.531302.58520K562PPIG
SAMSN1ENSG00000155307.132783.182901923.977100.532506.545605.39110K562PRPF8
SAMSN1ENSG00000155307.132757.547704028.24370-0.546807.211606.17710K562PTBP1
SAMSN1ENSG00000155307.134880.281707585.86800-0.636307.439306.09800K562PUF60
SAMSN1ENSG00000155307.1310847.514708069.669200.426706.637404.92190K562PUM1
SAMSN1ENSG00000155307.131050.362701606.68830-0.613203.492001.31850K562RBFOX2
SAMSN1ENSG00000155307.133828.899104834.39910-0.336405.079104.29780K562RBM15
SAMSN1ENSG00000155307.132389.614803863.27340-0.6930011.423609.54910K562RBM22
SAMSN1ENSG00000155307.133137.417201960.114000.678505.243104.11640K562RPS19
SAMSN1ENSG00000155307.132807.512804060.64570-0.532405.123402.69520K562SAFB2
SAMSN1ENSG00000155307.131709.657402089.18030-0.289202.445201.43090K562SAFB
SAMSN1ENSG00000155307.132573.261604476.31690-0.798706.652004.20360K562SBDS
SAMSN1ENSG00000155307.134715.485103702.006700.349004.667003.54580K562SF3B4
SAMSN1ENSG00000155307.131017.817901659.27330-0.705108.379506.24860K562SLBP
SAMSN1ENSG00000155307.133173.556203873.35620-0.287503.889502.79780K562SRPK2
SAMSN1ENSG00000155307.131903.030002437.12550-0.356903.770502.51240K562SRSF4
SAMSN1ENSG00000155307.135275.448006618.68060-0.327304.698102.79050K562SUCLG1
SAMSN1ENSG00000155307.131358.104401863.40980-0.456402.278701.36210K562SUPV3L1
SAMSN1ENSG00000155307.131611.265903996.82470-1.3107022.5634020.13130K562TARDBP
SAMSN1ENSG00000155307.132901.058203855.31100-0.410305.562104.33630K562TIA1
SAMSN1ENSG00000155307.131206.757102388.74870-0.9851013.7064011.51620K562TIAL1
SAMSN1ENSG00000155307.131893.111802537.13420-0.422402.164901.34330K562TRIM56
SAMSN1ENSG00000155307.136784.574308553.65460-0.334304.018002.31780K562UBE2L3
SAMSN1ENSG00000155307.133215.406104062.13890-0.337206.513705.46520K562UPF1
SAMSN1ENSG00000155307.132210.436603475.81190-0.653006.753405.35000K562WDR3
SAMSN1ENSG00000155307.133447.388606050.43240-0.8115016.9812014.72410K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SAMSN1 is not available on ENCORE database.





12 RBPs can affect the splicing of SAMSN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESAMSN1ENSG00000155307.13chr21-158892121588936215884764158848941591852515918664-0.052000.002170.03891excludedK562SF3B4
SESAMSN1ENSG00000155307.13chr21-158934701589354215884764158848941591852515918664-0.068000.000000.00000excludedK562AKAP8L
SESAMSN1ENSG00000155307.13chr21-158826301588278215872849158730561591852515918664-0.104000.000000.00000excludedK562AQR
SESAMSN1ENSG00000155307.13chr21-158892121588936215884764158848941589347015893542-0.057000.000000.00000excludedK562PUS1
SESAMSN1ENSG00000155307.13chr21-158892121588936215884764158848941591852515918664-0.091000.000010.00048excludedK562U2AF1
SESAMSN1ENSG00000155307.13chr21-158892121588936215884764158848941591852515918664-0.068000.000070.00950excludedK562HNRNPUL1
SESAMSN1ENSG00000155307.13chr21-158934701589354215884764158848941591852515918664-0.090000.000000.00000excludedK562UTP18
SESAMSN1ENSG00000155307.13chr21-158892121588936215884764158848941589347015893542-0.052000.000000.00000excludedK562RBM15
SESAMSN1ENSG00000155307.13chr21-158934701589354215884764158848941591852515918664-0.124000.000000.00000excludedK562AGGF1
MXESAMSN1ENSG00000155307.13chr21-15889212158893621589347015893534158847641588489415918525159186640.051000.000000.000001includedK562PUS1
MXESAMSN1ENSG00000155307.13chr21-1588476415884894158934701589354215872849158730561591852515918664-0.103000.000000.000002includedK562PUS1
MXESAMSN1ENSG00000155307.13chr21-15884764158848941588921215889362158826301588278215893470158935420.075000.000700.058631includedK562PUM1
MXESAMSN1ENSG00000155307.13chr21-15889212158893621589347015893542158847641588489415918525159186640.057000.003830.089971includedK562TAF15
MXESAMSN1ENSG00000155307.13chr21-1588921215889362158934701589354215884764158848941591852515918664-0.102000.000730.022652includedK562FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SAMSN1 is not avaliable on ENCORE database.