RWDD1

General Information

Gene Name       : RWDD1
Gene ID             : ENSG00000111832.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RWDD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RWDD1ENSG00000111832.1267.3864.5165.94ENCSR000AEF
HepG2RWDD1ENSG00000111832.1223.4250.7237.07ENCSR985KAT
K562RWDD1ENSG00000111832.1246.2960.3753.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RWDD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RWDD1 RNA is bound by 9 proteins.  







eCLIP assay for RWDD1 is not avaliable on ENCORE database.





9 proteins are bound to RWDD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6116914149116914317+3'-UTR,CDS4.4527614.24397HepG2BCLAF1
chr6116914219116914319+3'-UTR,CDS3.099383.09129HepG2GRWD1
chr6116910001116910150+3'-UTR,CDS,intron-Proximal5.3653924.97643HepG2BCLAF1
chr6116914201116914330+3'-UTR,CDS3.072424.94039K562YBX3
chr6116901480116901525+5'-UTR,CDS,intron-Proximal3.079383.87559K562YBX3
chr6116892792116892807+5'-UTR,CDS4.248549.97324K562YBX3
chr6116895220116895312+5'-UTR,intron-Distal,intron-Proximal3.313404.47973K562YBX3
chr6116892649116892822+5'-UTR,CDS,intron-Proximal5.228288.99884HepG2GRWD1
chr6116892686116892757+5'-UTR,CDS4.089063.01428K562UCHL5
chr6116892611116892736+5'-UTR4.961636.83552HepG2DDX3X
chr6116892739116892771+5'-UTR,CDS3.035653.69775K562YBX3
chr6116901457116901480+5'-UTR,CDS,intron-Proximal3.225726.15304K562YBX3
chr6116892771116892792+5'-UTR,CDS4.129984.32914K562YBX3
chr6116892610116892771+5'-UTR,CDS3.661506.67463K562DDX3X
chr6116892803116892860+5'-UTR,CDS,intron-Proximal3.749335.43815HepG2PRPF8
chr6116892757116892830+5'-UTR,CDS,intron-Proximal3.349874.59873K562UCHL5
chr6116892807116892819+5'-UTR,CDS,intron-Proximal4.2478010.01513K562YBX3
chr6116912099116912114+CDS,intron-Proximal4.067343.06595HepG2BCLAF1
chr6116911434116911472+CDS,intron-Proximal5.475699.78571HepG2BCLAF1
chr6116911462116911568+CDS,intron-Proximal3.140113.84692K562UCHL5
chr6116911454116911518+CDS5.429387.43302K562AGGF1
chr6116912050116912099+CDS,intron-Proximal3.296393.45280HepG2BCLAF1
chr6116910034116910149+CDS,intron-Proximal3.698734.86787HepG2TRA2A
chr6116911434116911462+CDS,intron-Proximal4.548264.42734K562UCHL5
chr6116911472116911567+CDS4.392589.69111HepG2BCLAF1
chr6116910027116910149+CDS,intron-Proximal3.416747.50303K562UCHL5
chr6116895874116895929+intron-Distal4.571615.75114HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RWDD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RWDD1 is not available on ENCORE database.

  • 76 RBPs can affect the levels of RWDD1.  








The Knockdown/knockout RNA-Seq assay for RWDD1 is not available on ENCORE database.





76 RBPs can affect the gene expression of RWDD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RWDD1ENSG00000111832.8767.385401258.93890-0.714208.906507.90810HepG2BOP1
RWDD1ENSG00000111832.81209.26720925.480800.385803.703102.82930HepG2CALR
RWDD1ENSG00000111832.8423.04500754.26020-0.834305.489804.40850HepG2CNOT7
RWDD1ENSG00000111832.8906.110301155.79780-0.351102.334801.69560HepG2CPSF6
RWDD1ENSG00000111832.8699.62310924.12760-0.401502.361301.78700HepG2DDX6
RWDD1ENSG00000111832.8507.13910647.54830-0.352603.387702.67920HepG2DNAJC2
RWDD1ENSG00000111832.8552.99220888.36320-0.683906.195905.32720HepG2EIF2S1
RWDD1ENSG00000111832.8647.44330981.73450-0.600604.663403.83660HepG2EIF4A3
RWDD1ENSG00000111832.8629.90200990.56290-0.653106.025905.03120HepG2FXR1
RWDD1ENSG00000111832.8463.07420918.87450-0.9886011.4030010.09560HepG2G3BP1
RWDD1ENSG00000111832.8756.04780975.52640-0.367702.355201.53760HepG2G3BP2
RWDD1ENSG00000111832.8616.805001310.25070-1.0870014.8153013.45070HepG2GPKOW
RWDD1ENSG00000111832.8448.41550659.60740-0.556804.559503.75760HepG2HNRNPA1
RWDD1ENSG00000111832.8820.844301082.40560-0.399102.675701.96920HepG2HNRNPF
RWDD1ENSG00000111832.8685.86380930.48530-0.440103.261002.50400HepG2HNRNPK
RWDD1ENSG00000111832.8993.308401250.39060-0.332102.132101.57200HepG2HNRNPLL
RWDD1ENSG00000111832.8774.105201065.87710-0.461402.079001.44560HepG2IGF2BP1
RWDD1ENSG00000111832.8589.91230934.00950-0.662906.023805.06550HepG2IGF2BP2
RWDD1ENSG00000111832.8418.22080555.85070-0.410402.619501.44340HepG2LIN28B
RWDD1ENSG00000111832.8677.46940996.44940-0.556604.089303.33670HepG2MATR3
RWDD1ENSG00000111832.8856.556701275.09640-0.574003.587302.47480HepG2MTPAP
RWDD1ENSG00000111832.8754.272101108.66410-0.555705.159704.15200HepG2NSUN2
RWDD1ENSG00000111832.8865.55980721.430800.262702.103201.35680HepG2PARN
RWDD1ENSG00000111832.8737.94490956.45540-0.374204.026803.32240HepG2PCBP1
RWDD1ENSG00000111832.8757.46400500.064100.599004.847703.81100HepG2PRPF8
RWDD1ENSG00000111832.8732.87590973.23470-0.409204.290103.64120HepG2PTBP1
RWDD1ENSG00000111832.8634.96830922.23020-0.538406.160105.17290HepG2PUM2
RWDD1ENSG00000111832.8760.545001054.02530-0.470805.155104.34190HepG2QKI
RWDD1ENSG00000111832.81216.42390645.699400.913606.371005.32650HepG2RAVER1
RWDD1ENSG00000111832.8686.000801021.54890-0.574505.075904.42800HepG2RBM22
RWDD1ENSG00000111832.8809.739901083.11220-0.419704.839304.15920HepG2NELFE
RWDD1ENSG00000111832.8801.166501008.78020-0.332403.280202.61630HepG2RECQL
RWDD1ENSG00000111832.8942.15740634.070100.571203.265202.23870HepG2RPS10
RWDD1ENSG00000111832.81719.09360937.094200.875302.960702.26260HepG2SF3A3
RWDD1ENSG00000111832.8961.094701237.67650-0.364902.740902.03800HepG2SF3B1
RWDD1ENSG00000111832.8615.00820860.43440-0.484505.890805.14020HepG2SRSF9
RWDD1ENSG00000111832.8495.17240726.23960-0.552503.196502.19080HepG2SUPT6H
RWDD1ENSG00000111832.8773.824301218.57450-0.655107.292706.19170HepG2TARDBP
RWDD1ENSG00000111832.81538.84630919.836500.742306.714805.74790HepG2U2AF1
RWDD1ENSG00000111832.8496.40290381.167400.381002.127301.46190HepG2UCHL5
RWDD1ENSG00000111832.8427.95510802.35700-0.9068016.1794014.90810HepG2UTP3
RWDD1ENSG00000111832.81187.06330709.990200.741405.749904.25740HepG2XRCC6
RWDD1ENSG00000111832.81094.43480762.169200.521907.610806.58660HepG2ZC3H8
RWDD1ENSG00000111832.81254.17350914.007200.456407.977407.17370HepG2ZNF622
RWDD1ENSG00000111832.8922.82360644.910100.516903.132601.74770HepG2ZRANB2
RWDD1ENSG00000111832.81630.841001261.101800.370803.397602.67220K562AKAP8L
RWDD1ENSG00000111832.81626.987201323.205600.298103.227602.23640K562ATP5C1
RWDD1ENSG00000111832.8603.10720778.30860-0.367903.175801.75080K562BCCIP
RWDD1ENSG00000111832.8967.842201317.37650-0.444803.730802.71630K562BOP1
RWDD1ENSG00000111832.81763.404201448.347100.283902.732601.56610K562CCDC124
RWDD1ENSG00000111832.81358.676802071.12410-0.608203.542902.31420K562CNOT7
RWDD1ENSG00000111832.81221.193201616.32310-0.404405.315103.74620K562CPEB4
RWDD1ENSG00000111832.8953.681801400.74480-0.554606.975005.72120K562CPSF6
RWDD1ENSG00000111832.8427.66540570.60550-0.416002.818901.75140K562CSTF2
RWDD1ENSG00000111832.8834.709201026.07290-0.297802.808801.58780K562DDX21
RWDD1ENSG00000111832.82164.881901672.702700.372006.047305.13610K562DDX47
RWDD1ENSG00000111832.81838.571301357.015200.438006.747505.28390K562DKC1
RWDD1ENSG00000111832.8913.409301302.79270-0.512307.389506.29620K562EIF2S2
RWDD1ENSG00000111832.8824.45720616.973900.418103.198902.31980K562EIF4A3
RWDD1ENSG00000111832.8959.841701208.01730-0.331802.180401.37370K562FTO
RWDD1ENSG00000111832.8892.85280641.626500.476605.361704.55750K562FXR1
RWDD1ENSG00000111832.81087.74840729.785700.575701.872601.30310K562G3BP2
RWDD1ENSG00000111832.81036.738001337.36300-0.367303.055402.22220K562GPKOW
RWDD1ENSG00000111832.81158.534101511.61230-0.383803.718002.46710K562HNRNPL
RWDD1ENSG00000111832.81896.333801338.332700.502705.942204.62880K562KIF1C
RWDD1ENSG00000111832.81599.841601281.123100.320402.515401.50570K562MAK16
RWDD1ENSG00000111832.8515.29800845.05160-0.713606.914405.37050K562MATR3
RWDD1ENSG00000111832.81855.565801499.272300.307502.779101.86770K562MBNL1
RWDD1ENSG00000111832.81501.267701050.882300.514502.672101.80770K562NAA15
RWDD1ENSG00000111832.8989.433701244.65590-0.331104.581003.64980K562NSUN2
RWDD1ENSG00000111832.8735.497501063.38990-0.531904.271703.23730K562PCBP3
RWDD1ENSG00000111832.81130.30930530.801001.0904016.6371014.77750K562PRPF8
RWDD1ENSG00000111832.82622.265501250.643501.0680021.7619020.26570K562PUS1
RWDD1ENSG00000111832.81823.643901218.583100.5815010.082008.97470K562RBM15
RWDD1ENSG00000111832.8910.53800692.704800.394403.288201.82900K562RBM25
RWDD1ENSG00000111832.8842.33090540.750500.639305.272204.14170K562RPS19
RWDD1ENSG00000111832.8972.98370726.795700.420803.506202.28050K562SAFB
RWDD1ENSG00000111832.81030.944401228.20350-0.252602.255101.51290K562SF3A3
RWDD1ENSG00000111832.81349.453601937.61130-0.521903.183601.30170K562SMN1
RWDD1ENSG00000111832.81025.821401258.32510-0.294703.410002.38390K562SRPK2
RWDD1ENSG00000111832.81282.80490818.129000.648809.596308.06160K562SYNCRIP
RWDD1ENSG00000111832.8491.65320816.20440-0.731307.618306.37700K562TARDBP
RWDD1ENSG00000111832.8625.97730787.29630-0.330802.316701.57500K562TIA1
RWDD1ENSG00000111832.8557.74360798.37230-0.517503.761102.66670K562TIAL1
RWDD1ENSG00000111832.8585.09670772.34720-0.400602.735001.65140K562TRA2A
RWDD1ENSG00000111832.8615.97430848.13790-0.461403.810902.66590K562TRIM56
RWDD1ENSG00000111832.81203.72610707.931400.765708.083506.05960K562U2AF1
RWDD1ENSG00000111832.81210.21380730.965000.7273011.6927010.02760K562U2AF2
RWDD1ENSG00000111832.8884.895201129.25380-0.351802.943402.04120K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RWDD1 is not available on ENCORE database.





25 RBPs can affect the splicing of RWDD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.155000.002960.05004includedK562SRSF1
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.116000.001940.09729excludedHepG2RBM22
SERWDD1ENSG00000111832.8chr6+116912050116912113116911434116911567116914142116914751-0.058000.000000.00006excludedHepG2U2AF1
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.057000.000770.01643excludedHepG2U2AF1
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.106000.000450.04528excludedHepG2PRPF8
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.055000.003090.07346excludedK562AKAP8L
SERWDD1ENSG00000111832.8chr6+116894020116894148116892582116892818116895220116895323-0.169000.000060.00938excludedK562XRCC6
SERWDD1ENSG00000111832.8chr6+1168940201168941481168925821168928181168952201168953340.304000.000000.00017includedHepG2DKC1
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.152000.000060.00897includedHepG2QKI
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.270000.000000.00000excludedHepG2U2AF2
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.083000.000030.00618excludedHepG2SRSF7
SERWDD1ENSG00000111832.8chr6+1168940201168941481168925821168928181168952201168953340.141000.000630.01163includedK562PUS1
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.168000.000220.01879includedHepG2NCBP2
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.118000.001590.07322includedHepG2PTBP1
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.267000.000000.00002includedHepG2MATR3
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.137000.000040.00168excludedK562U2AF1
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.111000.000010.00449includedK562HNRNPM
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.114000.000310.02624includedK562HNRNPL
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.203000.000000.00186excludedHepG2HNRNPUL1
SERWDD1ENSG00000111832.8chr6+116894020116894148116892582116892818116895220116895323-0.203000.000010.02210excludedK562ZRANB2
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.108000.000040.00681excludedK562HNRNPUL1
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.143000.000010.00248includedHepG2TIAL1
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.087000.000750.09801excludedK562SRSF7
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.150000.000040.00345includedHepG2SF3B4
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.114000.000020.00879includedK562UPF1
SERWDD1ENSG00000111832.8chr6+116895220116895334116892651116892818116901457116901523-0.167000.000000.00000excludedK562U2AF2
SERWDD1ENSG00000111832.8chr6+1168940201168941481168925821168928181168952201168953340.465000.000000.00000includedK562TARDBP
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.100000.000360.01718includedHepG2HNRNPC
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.221000.000000.00020includedHepG2SRSF9
SERWDD1ENSG00000111832.8chr6+1168940201168941481168925821168928181168952201168953340.495000.000000.00000includedK562PTBP1
SERWDD1ENSG00000111832.8chr6+1168952201168953341168926511168928181169014571169015230.148000.000000.00007includedK562HNRNPC
A3SSRWDD1ENSG00000111832.8chr6+1169058561169060201169058891169060201169014571169015230.083000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RWDD1 is not avaliable on ENCORE database.