RMDN1

General Information

Gene Name       : RMDN1
Gene ID             : ENSG00000176623.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RMDN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RMDN1ENSG00000176623.1178.5946.1262.36ENCSR000AEF
HepG2RMDN1ENSG00000176623.1134.1151.1842.64ENCSR985KAT
K562RMDN1ENSG00000176623.1133.2829.2231.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RMDN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RMDN1 RNA is bound by 10 proteins.  







eCLIP assay for RMDN1 is not avaliable on ENCORE database.





10 proteins are bound to RMDN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr88750080887500870-3'-UTR,CDS,intron-Distal,intron-Proximal3.317304.34695HepG2BCLAF1
chr88749710287497191-3'-UTR,CDS,intron-Distal,intron-Proximal4.300625.79432HepG2BCLAF1
chr88750078087500808-3'-UTR,CDS,intron-Distal,intron-Proximal4.450114.34038HepG2BCLAF1
chr88749251687492562-3'-UTR,CDS,intron-Distal,intron-Proximal4.791074.78529HepG2BCLAF1
chr88749871187498873-3'-UTR,CDS,intron-Distal,intron-Proximal4.4315512.93761HepG2BCLAF1
chr88749104087491241-3'-UTR,CDS,intron-Distal,intron-Proximal3.580347.74581HepG2BCLAF1
chr88748635587486422-3'-UTR,intron-Distal,intron-Proximal4.177545.97140K562PUM2
chr88752071487520880-5'-UTR,CDS,intron-Distal,intron-Proximal3.201754.68144K562DDX3X
chr88752068487520737-CDS,intron-Distal,intron-Proximal4.823764.35676HepG2PRPF8
chr88748713887487203-CDS,intron-Distal,intron-Proximal3.484863.16095HepG2U2AF2
chr88752075587520812-CDS,intron-Distal,intron-Proximal3.973754.82666HepG2DDX3X
chr88749105087491121-intron-Distal,intron-Proximal3.036263.14650K562TIA1
chr88751164187511702-intron-Distal4.007023.01445K562EXOSC5
chr88750793387508003-intron-Distal3.903793.01456K562EXOSC5
chr88748802487488116-intron-Distal4.228644.39969K562TARDBP
chr88748751987487603-intron-Distal3.046163.65136HepG2HNRNPL
chr88748931587489421-intron-Distal4.780454.53660HepG2KHSRP
chr88748846787488541-intron-Distal4.538914.91164HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RMDN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RMDN1 is not available on ENCORE database.

  • 59 RBPs can affect the levels of RMDN1.  








The Knockdown/knockout RNA-Seq assay for RMDN1 is not available on ENCORE database.





59 RBPs can affect the gene expression of RMDN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RMDN1ENSG00000176623.7715.42820485.305200.559803.413902.37260HepG2ABCF1
RMDN1ENSG00000176623.7659.19650844.73110-0.357803.442402.69120HepG2AUH
RMDN1ENSG00000176623.7757.73690462.325300.712704.125003.18480HepG2CNOT7
RMDN1ENSG00000176623.7257.39360359.06400-0.480302.310401.67420HepG2CPSF6
RMDN1ENSG00000176623.7641.00900489.375400.389303.898702.92910HepG2DDX19B
RMDN1ENSG00000176623.7639.53990481.029100.410802.013401.34230HepG2DDX55
RMDN1ENSG00000176623.7533.68170698.17630-0.387601.985401.45490HepG2DDX6
RMDN1ENSG00000176623.7648.51340506.250900.357202.851002.16410HepG2DKC1
RMDN1ENSG00000176623.7333.85070722.23790-1.113309.750608.49870HepG2EIF4B
RMDN1ENSG00000176623.71023.70020798.822200.357703.696702.75300HepG2EIF4G1
RMDN1ENSG00000176623.7600.41920420.373500.514203.459002.24430HepG2ESF1
RMDN1ENSG00000176623.7526.13280369.338700.510403.368802.66420HepG2HNRNPA1
RMDN1ENSG00000176623.7896.00800744.142000.267802.187001.34620HepG2HNRNPA2B1
RMDN1ENSG00000176623.7475.82650702.87360-0.562804.293303.43920HepG2HNRNPK
RMDN1ENSG00000176623.7586.12730737.58230-0.331603.180202.46100HepG2HNRNPL
RMDN1ENSG00000176623.7448.98910678.27950-0.595205.613004.79530HepG2PCBP1
RMDN1ENSG00000176623.7731.83180538.977600.441204.829604.05800HepG2PUS1
RMDN1ENSG00000176623.7497.91310747.50900-0.586206.309505.42100HepG2QKI
RMDN1ENSG00000176623.7546.90150678.38730-0.310801.989801.41110HepG2RBM25
RMDN1ENSG00000176623.7930.01890768.089400.275902.132201.64520HepG2NELFE
RMDN1ENSG00000176623.7632.14020464.103600.445702.188401.47620HepG2RPS3A
RMDN1ENSG00000176623.7389.18460561.35780-0.528502.697002.03160HepG2SF3A3
RMDN1ENSG00000176623.7235.55310473.36950-1.006903.061101.66450HepG2SNRNP200
RMDN1ENSG00000176623.71319.37490794.935800.7308016.2051015.17630HepG2SSB
RMDN1ENSG00000176623.7638.16150478.855800.414202.094101.49470HepG2SUPV3L1
RMDN1ENSG00000176623.7567.29910396.585800.516404.221603.63240HepG2TIAL1
RMDN1ENSG00000176623.7222.70310550.96870-1.306804.319903.07550HepG2U2AF2
RMDN1ENSG00000176623.7239.96100480.64390-1.0022012.4933011.36100HepG2UTP3
RMDN1ENSG00000176623.7589.11570415.690900.502902.606301.54880HepG2XPO5
RMDN1ENSG00000176623.7654.27220471.381100.472902.829302.09700HepG2XRN2
RMDN1ENSG00000176623.7423.73840547.52730-0.369803.146102.57520HepG2ZNF622
RMDN1ENSG00000176623.7756.62470887.31920-0.229901.826301.34590K562AGGF1
RMDN1ENSG00000176623.7460.243801283.23020-1.4793029.3810027.67220K562AQR
RMDN1ENSG00000176623.7540.48370739.37520-0.452102.792201.35310K562CKAP4
RMDN1ENSG00000176623.7309.21670454.58090-0.555903.929202.99500K562CPSF6
RMDN1ENSG00000176623.7753.64570903.29570-0.261302.107101.52590K562DDX47
RMDN1ENSG00000176623.7392.22180531.08630-0.437302.487201.62450K562EFTUD2
RMDN1ENSG00000176623.7554.17280677.26000-0.289402.056401.36240K562EIF3G
RMDN1ENSG00000176623.7322.59700647.12230-1.0043012.8777011.05780K562EIF4A3
RMDN1ENSG00000176623.7407.16010582.73780-0.517304.947303.33600K562EIF4B
RMDN1ENSG00000176623.7452.34460672.97440-0.573106.265605.40920K562FXR1
RMDN1ENSG00000176623.7891.75750629.851500.501503.058102.30850K562G3BP2
RMDN1ENSG00000176623.7663.880001016.39740-0.614506.474105.31040K562GRSF1
RMDN1ENSG00000176623.7231.32420525.00910-1.1824014.0406012.77920K562HNRNPC
RMDN1ENSG00000176623.7531.94030816.36830-0.618006.527104.83860K562HNRNPL
RMDN1ENSG00000176623.7599.81790820.62850-0.452202.083801.30930K562HNRNPU
RMDN1ENSG00000176623.7572.76830839.44370-0.551505.720704.49720K562MAGOH
RMDN1ENSG00000176623.7315.48290423.64960-0.425302.274801.48210K562METAP2
RMDN1ENSG00000176623.7546.46090707.76580-0.373203.662602.81690K562NSUN2
RMDN1ENSG00000176623.7757.60910488.689400.632404.994703.87770K562PCBP3
RMDN1ENSG00000176623.7575.47090374.857200.618305.792804.63760K562POLR2G
RMDN1ENSG00000176623.7489.26170781.97780-0.676507.022505.61250K562RBM22
RMDN1ENSG00000176623.7515.55800868.23220-0.751902.980501.37070K562RBM39
RMDN1ENSG00000176623.7354.22130645.47350-0.865703.008801.73670K562SF1
RMDN1ENSG00000176623.7493.16980698.44100-0.502105.009803.93830K562SF3A3
RMDN1ENSG00000176623.7290.77530412.73920-0.505302.543001.61140K562SF3B1
RMDN1ENSG00000176623.7393.28300655.12980-0.736208.130406.62150K562SF3B4
RMDN1ENSG00000176623.7450.50080741.15480-0.718202.831001.58800K562SNRNP200
RMDN1ENSG00000176623.7284.46450407.07330-0.517002.855701.81030K562SRFBP1
RMDN1ENSG00000176623.7320.13130500.50410-0.644704.046002.79960K562SUPV3L1
RMDN1ENSG00000176623.7543.25920809.17240-0.574805.018404.05030K562TARDBP
RMDN1ENSG00000176623.7294.48930452.75490-0.620503.841702.73190K562TIAL1
RMDN1ENSG00000176623.7313.36850480.92960-0.618004.369603.11920K562TRIM56
RMDN1ENSG00000176623.7525.68950750.46210-0.513605.847904.84760K562UPF1
RMDN1ENSG00000176623.7533.62960667.78680-0.323502.685101.85080K562WDR43
RMDN1ENSG00000176623.71209.688601520.26230-0.329702.935501.60220K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RMDN1 is not available on ENCORE database.





15 RBPs can affect the splicing of RMDN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERMDN1ENSG00000176623.7chr8-874971008749719087492505874925618749871287498872-0.214000.000410.01005excludedK562SRSF1
SERMDN1ENSG00000176623.7chr8-874971008749719087492505874925618749871287498872-0.228000.005740.08439excludedHepG2U2AF1
SERMDN1ENSG00000176623.7chr8-874971008749719087492505874925618749871287498872-0.289000.000300.03182excludedK562XRCC6
SERMDN1ENSG00000176623.7chr8-874971008749719087492505874925618749871287498872-0.179000.000420.01322excludedHepG2HNRNPK
SERMDN1ENSG00000176623.7chr8-875070578750719587500780875008688751922387519341-0.060000.001140.08112excludedHepG2TBRG4
SERMDN1ENSG00000176623.7chr8-8750705787507195875007808750086887519223875193410.101000.000020.00295includedHepG2QKI
SERMDN1ENSG00000176623.7chr8-875070578750719587500780875008688751922387519341-0.061000.000190.09171excludedHepG2SUGP2
SERMDN1ENSG00000176623.7chr8-8752034487520400875192238751934187520720875210090.086000.008200.06934includedK562AQR
SERMDN1ENSG00000176623.7chr8-8749710087497190874925058749256187498712874988720.253000.000960.01176includedK562AQR
SERMDN1ENSG00000176623.7chr8-8750705787507195875007808750086887519223875193410.069000.005490.05016includedK562AQR
SERMDN1ENSG00000176623.7chr8-874971008749719087492505874925618749871287498872-0.271000.000000.00016excludedHepG2SRSF1
SERMDN1ENSG00000176623.7chr8-8749710087497190874925058749256187498712874988720.202000.000010.00192includedHepG2SUPV3L1
SERMDN1ENSG00000176623.7chr8-8750705787507195875007808750086887519223875193410.072000.000960.08454includedHepG2TAF15
SERMDN1ENSG00000176623.7chr8-8750705787507195875007808750086887519223875193410.076000.002550.04132includedK562HNRNPC
A3SSRMDN1ENSG00000176623.7chr8-8748704887487182874870488748714387489522874895530.091000.000330.07601longerHepG2AKAP1
A3SSRMDN1ENSG00000176623.7chr8-8748704887487182874870488748714387489522874895530.109000.000030.04979longerK562LIN28B
MXERMDN1ENSG00000176623.7chr8-87489522874895538749710087497190874870488748718287498712874987440.160000.000000.000291includedK562HNRNPL
MXERMDN1ENSG00000176623.7chr8-8748704887487143874895228748955387486477874865878749115187491239-0.067000.001330.022352includedK562DROSHA
MXERMDN1ENSG00000176623.7chr8-87507057875071958751752887517608875007808750086887519223875193410.417000.001920.089501includedHepG2TBRG4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RMDN1 is not avaliable on ENCORE database.