RHNO1

General Information

Gene Name       : RHNO1
Gene ID             : ENSG00000171792.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RHNO1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RHNO1ENSG00000171792.1042.8141.3442.08ENCSR000AEF
HepG2RHNO1ENSG00000171792.1025.0038.9831.99ENCSR985KAT
K562RHNO1ENSG00000171792.1029.0930.5229.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RHNO1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RHNO1 RNA is bound by 3 proteins.  







eCLIP assay for RHNO1 is not avaliable on ENCORE database.





3 proteins are bound to RHNO1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1229944462994545+3'-UTR,CDS,intron-Distal,intron-Proximal3.6859612.39892K562DDX3X
chr1229863912986449+5'-UTR,intron-Distal,intron-Proximal4.563408.81962K562DDX3X
chr1229863892986536+5'-UTR,intron-Distal,intron-Proximal3.345244.63906HepG2NCBP2
chr1229974432997510+CDS,intron-Distal3.775903.02850K562YBX3
chr1229945702994640+CDS,intron-Distal3.824593.66655K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RHNO1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RHNO1 is not available on ENCORE database.

  • 97 RBPs can affect the levels of RHNO1.  








The Knockdown/knockout RNA-Seq assay for RHNO1 is not available on ENCORE database.





97 RBPs can affect the gene expression of RHNO1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RHNO1ENSG00000171792.6379.63400624.39810-0.717909.878608.87390HepG2ACO1
RHNO1ENSG00000171792.6602.48720812.00210-0.430602.367601.87120HepG2AKAP1
RHNO1ENSG00000171792.6697.82970949.13080-0.443705.238904.34430HepG2AUH
RHNO1ENSG00000171792.6353.67310550.67550-0.638804.119603.04270HepG2BCLAF1
RHNO1ENSG00000171792.6253.12870867.30260-1.7767035.6012033.87820HepG2BOP1
RHNO1ENSG00000171792.6647.49470973.55590-0.588406.745005.61130HepG2CALR
RHNO1ENSG00000171792.6347.51880624.24180-0.8450013.4312012.19490HepG2CKAP4
RHNO1ENSG00000171792.6594.60590796.22540-0.421202.912902.21010HepG2CPSF6
RHNO1ENSG00000171792.6489.90680993.83800-1.0205021.3123019.86650HepG2CELF1
RHNO1ENSG00000171792.6831.560801068.57820-0.361804.641203.71900HepG2DAZAP1
RHNO1ENSG00000171792.6603.48540777.84810-0.366202.034201.48890HepG2DDX3X
RHNO1ENSG00000171792.6385.50170623.10460-0.692704.764603.78080HepG2DDX55
RHNO1ENSG00000171792.6586.64060904.17430-0.624103.134702.09510HepG2DDX59
RHNO1ENSG00000171792.6409.59230668.16050-0.706005.171504.35150HepG2DDX6
RHNO1ENSG00000171792.6319.54060534.15890-0.741305.098803.59130HepG2AGO1
RHNO1ENSG00000171792.6317.88230642.34580-1.0149010.340809.23960HepG2EIF2S1
RHNO1ENSG00000171792.6392.08730709.88060-0.856407.714106.64870HepG2EIF4A3
RHNO1ENSG00000171792.6719.644701054.25390-0.550907.748806.47930HepG2EIF4G1
RHNO1ENSG00000171792.6621.909001009.90130-0.699407.647806.32220HepG2EIF4G2
RHNO1ENSG00000171792.6743.738101089.72290-0.551108.315707.37040HepG2ETF1
RHNO1ENSG00000171792.6623.302801168.42090-0.906608.268307.01740HepG2FIP1L1
RHNO1ENSG00000171792.6910.22540716.200500.345802.068901.46660HepG2FXR1
RHNO1ENSG00000171792.6201.31770323.60530-0.684803.221702.01410HepG2GRSF1
RHNO1ENSG00000171792.6778.07660982.07410-0.335903.137702.14980HepG2HNRNPA2B1
RHNO1ENSG00000171792.6527.97470757.35220-0.520504.132803.29820HepG2HNRNPC
RHNO1ENSG00000171792.6451.51460672.71860-0.575204.372203.51060HepG2HNRNPK
RHNO1ENSG00000171792.6571.43960973.38030-0.7684015.5952014.11390HepG2HNRNPL
RHNO1ENSG00000171792.6592.99210752.34430-0.343403.118902.47790HepG2HNRNPU
RHNO1ENSG00000171792.6330.06680675.35710-1.0329011.039209.78570HepG2IGF2BP2
RHNO1ENSG00000171792.6882.494001280.99670-0.537603.775202.80180HepG2LARP4
RHNO1ENSG00000171792.6538.87600737.44280-0.452602.762202.12990HepG2NCBP2
RHNO1ENSG00000171792.6629.653401059.60220-0.7509011.8153010.28650HepG2NOL12
RHNO1ENSG00000171792.6312.04340572.17360-0.874704.779303.32010HepG2NONO
RHNO1ENSG00000171792.6191.28560319.51640-0.740203.195902.23870HepG2PABPC1
RHNO1ENSG00000171792.6422.12540656.76480-0.637704.853903.90820HepG2PABPC4
RHNO1ENSG00000171792.6412.27840691.92550-0.7470010.606709.54240HepG2PCBP1
RHNO1ENSG00000171792.6359.14940668.43740-0.896205.988304.50660HepG2PCBP2
RHNO1ENSG00000171792.6626.76140471.993400.409003.120601.81270HepG2PKM
RHNO1ENSG00000171792.6245.84910480.67450-0.967308.072406.77720HepG2PRPF8
RHNO1ENSG00000171792.6504.648301011.49450-1.0031015.8791014.60980HepG2PUF60
RHNO1ENSG00000171792.6749.661401073.75960-0.518408.678307.75140HepG2PUM1
RHNO1ENSG00000171792.6853.035401072.96690-0.330902.712502.04840HepG2PUM2
RHNO1ENSG00000171792.6868.65800635.987000.449705.597104.77640HepG2PUS1
RHNO1ENSG00000171792.6373.61440645.17590-0.788104.192403.33350HepG2RAVER1
RHNO1ENSG00000171792.6920.541101125.58390-0.290102.312901.52030HepG2RBM15
RHNO1ENSG00000171792.6402.13450910.80800-1.1795024.3219023.08960HepG2RBM22
RHNO1ENSG00000171792.6386.01820692.03230-0.8422010.063108.83710HepG2RBM25
RHNO1ENSG00000171792.6439.78680803.06460-0.8687010.953309.75010HepG2RPLP0
RHNO1ENSG00000171792.6425.95540633.54340-0.572703.014502.03000HepG2RPS10
RHNO1ENSG00000171792.6327.31930555.37840-0.762807.477806.52680HepG2RPS19
RHNO1ENSG00000171792.6494.95120687.59280-0.474303.113202.26430HepG2RPS2
RHNO1ENSG00000171792.6137.26530475.48650-1.7924020.6415018.86900HepG2RRP9
RHNO1ENSG00000171792.6505.56640854.70970-0.757505.562204.58670HepG2SF3A3
RHNO1ENSG00000171792.6461.53060733.02500-0.667408.622807.66880HepG2SF3B4
RHNO1ENSG00000171792.6736.71730969.89320-0.396704.474003.61470HepG2SLBP
RHNO1ENSG00000171792.6440.87330657.20030-0.576002.987301.98780HepG2SMNDC1
RHNO1ENSG00000171792.6497.817801028.72640-1.0472025.2577024.14160HepG2SRFBP1
RHNO1ENSG00000171792.6641.22750765.11200-0.254801.889901.47740HepG2SRSF1
RHNO1ENSG00000171792.6593.67400917.36820-0.627804.490903.18640HepG2SRSF3
RHNO1ENSG00000171792.6607.08740998.71960-0.7182012.2344011.04510HepG2SRSF5
RHNO1ENSG00000171792.6513.85930732.35660-0.511206.239705.26140HepG2SRSF7
RHNO1ENSG00000171792.6466.68310622.45300-0.415503.939803.30490HepG2SRSF9
RHNO1ENSG00000171792.6352.28420620.29090-0.816206.265705.30800HepG2SUPV3L1
RHNO1ENSG00000171792.6631.31040839.57940-0.411302.908402.16740HepG2TARDBP
RHNO1ENSG00000171792.6184.69490415.75920-1.170609.937508.27960HepG2TFIP11
RHNO1ENSG00000171792.6441.63100731.00580-0.727008.748507.94910HepG2TIAL1
RHNO1ENSG00000171792.6508.33610737.58050-0.537006.820006.00290HepG2TRIM56
RHNO1ENSG00000171792.6773.48960999.71270-0.370102.154801.59380HepG2U2AF1
RHNO1ENSG00000171792.6665.325101046.01840-0.652805.309004.13110HepG2UBE2L3
RHNO1ENSG00000171792.6131.33950366.42490-1.4802015.2754013.52970HepG2UCHL5
RHNO1ENSG00000171792.6422.54810757.99350-0.8431014.4632013.10270HepG2UPF1
RHNO1ENSG00000171792.6382.60140779.13650-1.0260018.7368016.43780HepG2UTP18
RHNO1ENSG00000171792.6518.35460731.81810-0.497505.541604.74230HepG2UTP3
RHNO1ENSG00000171792.6444.78890610.60840-0.457102.600901.89770HepG2XRN2
RHNO1ENSG00000171792.6620.24040900.69370-0.538206.374405.42420HepG2ZC3H8
RHNO1ENSG00000171792.6524.61720833.65250-0.668209.267108.41670HepG2ZNF622
RHNO1ENSG00000171792.6470.05540694.46510-0.563106.240905.44140K562AGGF1
RHNO1ENSG00000171792.6444.18530722.61200-0.702107.179706.08510K562AKAP8L
RHNO1ENSG00000171792.6351.05210765.59220-1.1249013.4383012.28400K562AQR
RHNO1ENSG00000171792.6510.53440716.94610-0.489902.619201.77230K562BOP1
RHNO1ENSG00000171792.6593.78330829.95780-0.483104.811903.21680K562CCDC124
RHNO1ENSG00000171792.6535.43790762.36350-0.509802.973302.16050K562CPSF6
RHNO1ENSG00000171792.6749.061401017.64980-0.442105.517604.64340K562DDX47
RHNO1ENSG00000171792.6244.66060398.05710-0.702204.980003.73900K562EFTUD2
RHNO1ENSG00000171792.6554.73660775.60150-0.483502.738801.88960K562FMR1
RHNO1ENSG00000171792.6419.05550657.35520-0.649504.596403.39010K562FTO
RHNO1ENSG00000171792.6444.18190333.070300.415202.664302.06870K562FXR1
RHNO1ENSG00000171792.6551.64870727.90470-0.400002.142201.44030K562GPKOW
RHNO1ENSG00000171792.6638.55370888.80480-0.477104.286203.34910K562GRSF1
RHNO1ENSG00000171792.6363.69060617.09990-0.762807.510806.57300K562HNRNPC
RHNO1ENSG00000171792.6715.39390919.65220-0.362402.822901.75340K562HNRNPL
RHNO1ENSG00000171792.61080.91130666.308300.697906.648705.10840K562HNRNPM
RHNO1ENSG00000171792.61398.046201098.303100.348002.624701.84880K562HSPD1
RHNO1ENSG00000171792.6524.63880766.90850-0.547704.968203.79970K562KIF1C
RHNO1ENSG00000171792.6387.46910621.44750-0.681603.735202.63350K562KRR1
RHNO1ENSG00000171792.6569.68700713.15630-0.324002.564201.78430K562MTPAP
RHNO1ENSG00000171792.6365.65080602.18200-0.719704.674903.43270K562NAA15
RHNO1ENSG00000171792.6673.24600792.38150-0.235101.968301.32560K562NSUN2
RHNO1ENSG00000171792.6262.03940424.18990-0.694905.012203.68780K562PCBP2
RHNO1ENSG00000171792.6290.98920387.35730-0.412701.934801.30120K562PRPF8
RHNO1ENSG00000171792.6590.82140463.202400.351002.348001.72910K562PTBP1
RHNO1ENSG00000171792.6360.30950716.70750-0.9921011.024709.99050K562PUS1
RHNO1ENSG00000171792.6482.61080698.26160-0.532905.236204.44290K562RBM15
RHNO1ENSG00000171792.6718.71700534.970600.425903.102201.95410K562SAFB
RHNO1ENSG00000171792.6562.99440781.87710-0.473804.956803.89270K562SF3A3
RHNO1ENSG00000171792.6450.85910692.13490-0.618403.707302.57290K562SF3B1
RHNO1ENSG00000171792.6190.57200344.19290-0.852907.273305.84670K562SF3B4
RHNO1ENSG00000171792.6345.52720454.09660-0.394202.302401.65000K562SRSF1
RHNO1ENSG00000171792.6805.66100602.194400.419803.657902.71460K562SYNCRIP
RHNO1ENSG00000171792.6516.87920718.91460-0.476004.036402.97330K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RHNO1 is not available on ENCORE database.





4 RBPs can affect the splicing of RHNO1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERHNO1ENSG00000171792.6chr12+2994448299465829863642986448299707629984370.203000.000050.00786includedHepG2SRSF7
SERHNO1ENSG00000171792.6chr12+299444829946582986364298644829970762998437-0.247000.000390.06306excludedHepG2TIA1
SERHNO1ENSG00000171792.6chr12+2994428299470029863642986448299707629973030.059000.000340.07855includedK562PPIL4
SERHNO1ENSG00000171792.6chr12+299444829947002986388298644829970762998626-0.148000.000080.00603excludedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RHNO1 is not avaliable on ENCORE database.