RASSF1

General Information

Gene Name       : RASSF1
Gene ID             : ENSG00000068028.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RASSF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RASSF1ENSG00000068028.176.0812.609.34ENCSR000AEF
HepG2RASSF1ENSG00000068028.1713.086.379.72ENCSR985KAT
K562RASSF1ENSG00000068028.1720.0115.3217.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RASSF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RASSF1 RNA is bound by 27 proteins.  







eCLIP assay for RASSF1 is not avaliable on ENCORE database.





27 proteins are bound to RASSF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr35036724550367340-3'-UTR,intron-Distal4.0262912.91015K562PABPC4
chr35036790250367951-3'-UTR,intron-Distal4.6639423.46296K562EIF4G2
chr35036869150368780-3'-UTR,CDS,intron-Distal,intron-Proximal3.359977.18622K562PRPF8
chr35036751850367644-3'-UTR,intron-Distal4.7316710.66565K562ZC3H11A
chr35036787450367940-3'-UTR,intron-Distal4.143544.01795HepG2LARP4
chr35036772450367813-3'-UTR,intron-Distal5.7325729.00684K562UPF1
chr35036785750367955-3'-UTR,intron-Distal4.052767.95304K562GEMIN5
chr35036725850367329-3'-UTR,intron-Distal3.3826412.36567K562EIF4G2
chr35036781850367948-3'-UTR,intron-Distal3.053824.69056HepG2LSM11
chr35036792250367940-3'-UTR,intron-Distal5.3202620.18621K562TARDBP
chr35036748250367635-3'-UTR,intron-Distal3.730446.19872K562APOBEC3C
chr35036786750367958-3'-UTR,intron-Distal4.413155.45842K562SRSF7
chr35036786850367955-3'-UTR,intron-Distal4.2792419.75798K562DDX6
chr35036797350368064-3'-UTR,CDS,intron-Distal4.758645.56813HepG2PPIG
chr35036901050369069-3'-UTR,CDS,intron-Distal4.173683.49905HepG2PPIG
chr35036781350367853-3'-UTR,intron-Distal4.8714114.74404K562UPF1
chr35036784250367902-3'-UTR,intron-Distal5.2696820.60960K562EIF4G2
chr35036755650367649-3'-UTR,intron-Distal4.1158416.95589K562DDX55
chr35036724850367335-3'-UTR,intron-Distal4.550929.61868K562ZC3H11A
chr35036754050367645-3'-UTR,intron-Distal4.484369.27105HepG2LSM11
chr35036728150367343-3'-UTR,intron-Distal3.879996.93197HepG2SUB1
chr35036794050367958-3'-UTR,intron-Distal4.8899314.53709K562TARDBP
chr35036787750367913-3'-UTR,intron-Distal4.210846.51752K562PABPC4
chr35036952550369650-3'-UTR,CDS,intron-Distal,intron-Proximal4.761264.62947HepG2AQR
chr35036796750368050-3'-UTR,CDS,intron-Distal3.296725.28657K562RBM15
chr35036749450367544-3'-UTR,intron-Distal4.174947.45535K562DDX6
chr35036757650367638-3'-UTR,intron-Distal4.4586014.16954K562UPF1
chr35036954050369628-3'-UTR,CDS,intron-Distal,intron-Proximal4.4064413.09382K562AQR
chr35036749350367540-3'-UTR,intron-Distal4.5921714.74404K562UPF1
chr35036754350367637-3'-UTR,intron-Distal3.155225.96210K562LSM11
chr35036783550367922-3'-UTR,intron-Distal5.1086535.42486K562TARDBP
chr35036726550367345-3'-UTR,intron-Distal3.567436.47997K562NOLC1
chr35036787550367959-3'-UTR,intron-Distal4.2739523.03436K562DDX55
chr35036750650367648-3'-UTR,intron-Distal4.998686.18915HepG2PABPN1
chr35036725150367343-3'-UTR,intron-Distal5.8893729.74431K562TARDBP
chr35036751750367648-3'-UTR,intron-Distal3.609485.06214K562FUS
chr35036786950367948-3'-UTR,intron-Distal3.562487.39410K562BUD13
chr35036785350367953-3'-UTR,intron-Distal5.1037940.70812K562UPF1
chr35036724250367334-3'-UTR,intron-Distal4.5931137.98653K562UPF1
chr35036780850367954-3'-UTR,intron-Distal3.601348.15748K562LSM11
chr35036724150367324-3'-UTR,intron-Distal3.9398519.86499K562DDX6
chr35036750750367640-3'-UTR,intron-Distal5.9927866.07473K562PABPC4
chr35036727150367334-3'-UTR,intron-Distal3.774373.29045K562AKAP1
chr35036878450368865-3'-UTR,CDS,intron-Distal3.120223.72946HepG2PPIG
chr35036778750367948-3'-UTR,intron-Distal4.061285.29636HepG2AKAP1
chr35036726050367338-3'-UTR,intron-Distal3.1095720.45173K562DDX55
chr35036788050367953-3'-UTR,intron-Distal3.625926.50688HepG2SUB1
chr35036748750367556-3'-UTR,intron-Distal3.9473211.34330K562DDX55
chr35036779250367922-3'-UTR,intron-Distal4.799134.20997HepG2UPF1
chr35036754450367634-3'-UTR,intron-Distal4.8601418.37614K562DDX6
chr35037467050374802-5'-UTR,CDS,intron-Distal3.709923.01994HepG2GTF2F1
chr35037466250374774-5'-UTR,CDS,intron-Distal3.689925.17701K562NONO
chr35037458050374629-CDS,intron-Distal3.253895.28960K562AQR
chr35036873050368765-intron-Distal,intron-Proximal4.672064.86944K562AQR
chr35037161450371708-intron-Distal4.446544.76505K562HNRNPK
chr35037443650374550-intron-Distal3.224978.15596HepG2RBM22
chr35037491550374967-intron-Distal,intron-Proximal4.089493.28464K562EWSR1
chr35037448850374565-intron-Distal4.453213.98553K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RASSF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RASSF1 is not available on ENCORE database.

  • 69 RBPs can affect the levels of RASSF1.  








The Knockdown/knockout RNA-Seq assay for RASSF1 is not available on ENCORE database.





69 RBPs can affect the gene expression of RASSF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RASSF1ENSG00000068028.13189.90000273.02080-0.523801.962101.50480HepG2AKAP1
RASSF1ENSG00000068028.13150.35700225.89250-0.587202.377101.64520HepG2ASCC1
RASSF1ENSG00000068028.13266.70600350.05270-0.392302.144901.52690HepG2AUH
RASSF1ENSG00000068028.1367.22290114.74980-0.771502.384201.82400HepG2BOP1
RASSF1ENSG00000068028.13125.35540257.42810-1.038108.979607.91240HepG2CKAP4
RASSF1ENSG00000068028.13156.44700348.02670-1.153502.247801.56310HepG2CNOT7
RASSF1ENSG00000068028.13173.10040238.12650-0.460102.507001.71020HepG2DDX19B
RASSF1ENSG00000068028.13101.13600176.83670-0.806103.593202.54360HepG2DDX24
RASSF1ENSG00000068028.13168.77340261.51340-0.631802.866002.23010HepG2DDX3X
RASSF1ENSG00000068028.13370.03890224.692200.719604.041303.30680HepG2DDX6
RASSF1ENSG00000068028.13171.97850246.32840-0.518402.555301.90130HepG2DKC1
RASSF1ENSG00000068028.1395.56610166.38730-0.800003.058301.88610HepG2AGO1
RASSF1ENSG00000068028.13308.47850215.955600.514302.298401.75420HepG2EIF2S1
RASSF1ENSG00000068028.1388.98590138.47980-0.638002.179301.36770HepG2EIF3D
RASSF1ENSG00000068028.13272.58120401.91890-0.560204.527203.79280HepG2ETF1
RASSF1ENSG00000068028.13219.86460294.79900-0.423102.324301.45910HepG2HNRNPA2B1
RASSF1ENSG00000068028.1365.03260113.94710-0.809102.357901.77150HepG2HNRNPLL
RASSF1ENSG00000068028.13259.15440159.008300.704604.228903.35000HepG2IGF2BP1
RASSF1ENSG00000068028.13530.59940240.923901.1389011.3611010.06390HepG2MAGOH
RASSF1ENSG00000068028.1376.17720144.92450-0.927902.441601.45070HepG2METAP2
RASSF1ENSG00000068028.1389.02700136.59180-0.617602.106001.39680HepG2PRPF8
RASSF1ENSG00000068028.13208.30460322.31360-0.629805.177404.41820HepG2PUM1
RASSF1ENSG00000068028.13164.84550262.24660-0.669804.482903.73550HepG2PUS1
RASSF1ENSG00000068028.13420.15910173.944201.2722013.6159012.31290HepG2RPLP0
RASSF1ENSG00000068028.1367.28920134.75740-1.001904.201303.45870HepG2RPS19
RASSF1ENSG00000068028.13143.65030349.94980-1.284602.742401.94660HepG2RPS3A
RASSF1ENSG00000068028.1387.63290135.10740-0.624602.018601.33740HepG2RRP9
RASSF1ENSG00000068028.13163.94640268.48200-0.711604.131903.58280HepG2SRSF1
RASSF1ENSG00000068028.13200.07170299.78410-0.583403.781103.07040HepG2SRSF5
RASSF1ENSG00000068028.13203.91610329.41320-0.691905.489704.81510HepG2SSB
RASSF1ENSG00000068028.13129.88290211.18500-0.701303.907203.09870HepG2UPF1
RASSF1ENSG00000068028.13271.43270161.421400.749702.513001.55970HepG2UPF2
RASSF1ENSG00000068028.13114.14270217.07280-0.927305.970004.48390HepG2UTP18
RASSF1ENSG00000068028.13154.16030232.26380-0.591303.423002.83290HepG2ZNF622
RASSF1ENSG00000068028.131573.67980960.952900.7115010.383909.37530K562AGGF1
RASSF1ENSG00000068028.131963.510201056.021200.894709.792007.64710K562AKAP8
RASSF1ENSG00000068028.131566.96200999.934500.648009.001107.74670K562AKAP8L
RASSF1ENSG00000068028.132019.356501024.663200.9786017.5349016.22190K562AQR
RASSF1ENSG00000068028.131271.608801049.208800.277302.709001.80570K562ATP5C1
RASSF1ENSG00000068028.13728.82840559.522400.381303.264002.21860K562BCLAF1
RASSF1ENSG00000068028.131040.23160753.720500.464705.969505.06400K562DDX47
RASSF1ENSG00000068028.131291.903001075.879100.263902.699801.83730K562DKC1
RASSF1ENSG00000068028.13767.72330482.898600.668804.356202.71520K562EEF2
RASSF1ENSG00000068028.13886.58520701.233900.338302.904302.17060K562EIF2S2
RASSF1ENSG00000068028.131095.05810750.120500.545705.741304.56410K562EIF4A3
RASSF1ENSG00000068028.13215.75810408.24880-0.920003.504702.68930K562G3BP2
RASSF1ENSG00000068028.13807.39000467.703400.787607.379805.05450K562GEMIN5
RASSF1ENSG00000068028.131618.19250934.335100.792306.153405.02030K562GRSF1
RASSF1ENSG00000068028.13633.03660441.949800.518303.939703.24260K562HNRNPC
RASSF1ENSG00000068028.13903.48920603.090000.583004.224602.84290K562IGF2BP2
RASSF1ENSG00000068028.13800.31580613.430900.383602.850401.63790K562IGF2BP3
RASSF1ENSG00000068028.131427.001001061.112200.427304.458503.37570K562KIF1C
RASSF1ENSG00000068028.131021.22690633.840400.688008.832307.28640K562MAGOH
RASSF1ENSG00000068028.131295.806701015.800900.351102.952001.83210K562MAK16
RASSF1ENSG00000068028.13812.81190630.136600.367203.606602.69190K562MTPAP
RASSF1ENSG00000068028.131310.87880833.214900.653705.325703.96160K562NAA15
RASSF1ENSG00000068028.13864.92470700.106000.304903.134802.34410K562NSUN2
RASSF1ENSG00000068028.131074.26590639.159800.749003.684202.49660K562PABPN1
RASSF1ENSG00000068028.13830.06820619.569400.421903.692702.12630K562PCBP1
RASSF1ENSG00000068028.13654.40710477.475200.454703.252302.35040K562PPIG
RASSF1ENSG00000068028.131204.85220760.141300.664402.759001.33070K562PPP1R8
RASSF1ENSG00000068028.13612.53140453.953500.432102.396701.69680K562PRPF8
RASSF1ENSG00000068028.13839.88060615.814400.447604.094503.30270K562PTBP1
RASSF1ENSG00000068028.131812.980001306.595100.472502.049301.34650K562PUF60
RASSF1ENSG00000068028.131910.92290991.521500.9465016.8793015.57960K562PUS1
RASSF1ENSG00000068028.131367.72740966.203700.501306.774305.87240K562RBM15
RASSF1ENSG00000068028.13727.93920462.300600.654904.573703.52050K562RPS19
RASSF1ENSG00000068028.13953.13280584.675300.704902.882401.64330K562SF1
RASSF1ENSG00000068028.13251.01800381.34590-0.603303.661501.76980K562SND1
RASSF1ENSG00000068028.13745.80850570.146100.387402.645401.62280K562SRSF5
RASSF1ENSG00000068028.13640.31660439.342600.543303.385902.25110K562SUPV3L1
RASSF1ENSG00000068028.13813.65440589.367200.465104.068403.04810K562TIA1
RASSF1ENSG00000068028.13760.40220578.335100.394802.674801.60410K562TRA2A
RASSF1ENSG00000068028.13559.07320405.083200.464702.991501.99990K562TRIM56
RASSF1ENSG00000068028.131131.01310742.339800.6074010.696809.40000K562UPF1
RASSF1ENSG00000068028.131466.204301005.440300.544202.603401.36270K562UTP18
RASSF1ENSG00000068028.13876.48390660.555200.407904.934603.83350K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RASSF1 is not available on ENCORE database.





1 RBPs can affect the splicing of RASSF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRASSF1ENSG00000068028.13chr3-5036948050369725503694805036958550375335503754420.289000.001770.01157longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RASSF1 is not avaliable on ENCORE database.