RARS

General Information

Gene Name       : RARS
Gene ID             : ENSG00000113643.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RARS)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RARSENSG00000113643.876.4571.2173.83ENCSR000AEF
HepG2RARSENSG00000113643.840.1982.9361.56ENCSR985KAT
K562RARSENSG00000113643.892.7690.1891.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RARS is not avaliable on ENCORE database.



Proteins bound to RNA
  • RARS RNA is bound by 21 proteins.  







eCLIP assay for RARS is not avaliable on ENCORE database.





21 proteins are bound to RARS RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5167933013167933058+3'-UTR,CDS,intron-Proximal3.055615.09479K562SF3B4
chr5167943779167943826+3'-UTR,CDS,intron-Proximal3.072673.65461K562BUD13
chr5167946101167946169+3'-UTR,CDS5.086925.56169K562ZC3H11A
chr5167922324167922354+3'-UTR,5'-UTR,CDS4.0469218.72703K562U2AF2
chr5167919752167919802+3'-UTR,5'-UTR,CDS,intron-Proximal3.382377.93794HepG2BCLAF1
chr5167933057167933104+3'-UTR,CDS3.590214.33455K562LIN28B
chr5167933026167933119+3'-UTR,CDS3.432157.72032HepG2G3BP1
chr5167946113167946185+3'-UTR,CDS3.574738.02406K562PABPC4
chr5167946095167946160+3'-UTR,CDS3.184773.28764HepG2LARP4
chr5167922274167922348+3'-UTR,5'-UTR,CDS,intron-Proximal3.320369.05296K562U2AF1
chr5167922271167922324+3'-UTR,5'-UTR,CDS,intron-Proximal4.8672116.70959K562U2AF2
chr5167921542167921586+3'-UTR,5'-UTR,CDS,intron-Proximal3.646193.25055K562U2AF2
chr5167921602167921649+3'-UTR,5'-UTR,CDS3.256503.91115K562LIN28B
chr5167944963167944991+3'-UTR,CDS3.821417.65975HepG2BCLAF1
chr5167921504167921578+3'-UTR,5'-UTR,CDS,intron-Proximal4.006438.08874K562SF3B4
chr5167922271167922350+3'-UTR,5'-UTR,CDS,intron-Proximal3.9064522.09488HepG2U2AF2
chr5167946094167946172+3'-UTR,CDS3.708445.45754HepG2ZC3H11A
chr5167937616167937640+3'-UTR,CDS3.438445.45876HepG2BCLAF1
chr5167933023167933057+3'-UTR,CDS,intron-Proximal4.3737311.22340K562LIN28B
chr5167921505167921604+3'-UTR,5'-UTR,CDS,intron-Proximal4.1164325.07366K562EFTUD2
chr5167943783167943891+3'-UTR,CDS4.098437.00115HepG2G3BP1
chr5167933025167933103+3'-UTR,CDS,intron-Proximal3.6256414.45635HepG2BCLAF1
chr5167919664167919689+3'-UTR,5'-UTR,CDS3.498594.74886HepG2BCLAF1
chr5167922272167922342+3'-UTR,5'-UTR,CDS,intron-Proximal5.4728716.24956K562SF3B4
chr5167922354167922415+5'-UTR,CDS3.180768.39086K562U2AF2
chr5167913503167913562+5'-UTR,CDS,intron-Proximal3.553509.02617HepG2PPIG
chr5167924305167924350+5'-UTR,CDS3.446874.29172K562YBX3
chr5167915719167915740+5'-UTR,CDS4.438448.85766HepG2BCLAF1
chr5167922409167922470+5'-UTR,CDS,intron-Proximal3.3988111.62395K562EFTUD2
chr5167924221167924290+5'-UTR,CDS,intron-Proximal3.015208.05222HepG2U2AF2
chr5167922350167922410+5'-UTR,CDS3.3780712.14822HepG2U2AF2
chr5167929085167929111+5'-UTR,CDS,intron-Proximal4.976517.60539K562LIN28B
chr5167927620167927681+5'-UTR,CDS4.676675.12780HepG2G3BP1
chr5167922348167922408+5'-UTR,CDS4.521679.42782K562U2AF1
chr5167924352167924422+5'-UTR,CDS,intron-Proximal3.062085.61685K562AQR
chr5167924208167924275+5'-UTR,CDS,intron-Proximal4.2360315.18333K562SF3B4
chr5167922416167922486+5'-UTR,CDS,intron-Proximal6.165446.35567HepG2PRPF8
chr5167920724167920862+intron-Distal,intron-Proximal4.0217815.29314K562KHSRP
chr5167922128167922212+intron-Distal4.6355115.08004K562KHSRP
chr5167921697167921764+intron-Distal,intron-Proximal3.6227714.66500K562EFTUD2
chr5167924114167924158+intron-Distal,intron-Proximal3.901274.73972K562PUM2
chr5167927412167927516+intron-Distal,intron-Proximal5.5403310.95353K562KHSRP
chr5167920726167920867+intron-Distal,intron-Proximal4.407287.97263HepG2KHSRP
chr5167925418167925486+intron-Distal3.979834.08064K562KHSRP
chr5167927309167927374+intron-Distal3.128813.06005HepG2QKI
chr5167922212167922262+intron-Distal,intron-Proximal4.2475912.21461K562KHSRP
chr5167922647167922696+intron-Distal4.289335.52578K562U2AF2
chr5167937557167937582+intron-Proximal4.863688.05832K562SF3B4
chr5167921693167921729+intron-Proximal3.066963.37074K562TIA1
chr5167921683167921753+intron-Proximal4.551035.50278HepG2TIAL1
chr5167922466167922519+intron-Proximal3.970944.76597HepG2EFTUD2
chr5167945100167945158+intron-Proximal3.874884.98250K562AQR
chr5167921667167921736+intron-Proximal3.096444.63797K562PRPF8
chr5167937537167937557+intron-Proximal4.783458.05832K562SF3B4
chr5167922456167922538+intron-Proximal3.774305.25794K562RBM22
chr5167924177167924208+intron-Proximal6.069209.44792K562SF3B4
chr5167933204167933247+intron-Proximal4.734823.62536K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RARS is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RARS is not available on ENCORE database.

  • 85 RBPs can affect the levels of RARS.  








The Knockdown/knockout RNA-Seq assay for RARS is not available on ENCORE database.





85 RBPs can affect the gene expression of RARS :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RARSENSG00000113643.41141.779201486.16180-0.380303.007601.97040HepG2ADAR
RARSENSG00000113643.43974.897002571.886500.628006.482205.70640HepG2AKAP1
RARSENSG00000113643.42372.627001688.919000.490304.845103.86010HepG2CALR
RARSENSG00000113643.41575.590602021.73180-0.359702.764201.99230HepG2CIRBP
RARSENSG00000113643.41235.917601666.27830-0.431003.257302.51690HepG2CPSF6
RARSENSG00000113643.41111.882101394.86260-0.327102.570501.50450HepG2CPSF7
RARSENSG00000113643.42037.097602532.47090-0.314005.774304.75930HepG2DAZAP1
RARSENSG00000113643.41159.019201526.21500-0.397104.119702.72480HepG2DDX1
RARSENSG00000113643.41344.170902116.51920-0.655006.452205.53910HepG2DDX6
RARSENSG00000113643.41176.970101483.15890-0.333603.332302.62910HepG2DNAJC2
RARSENSG00000113643.41331.462101058.216500.331302.343401.32550HepG2EFTUD2
RARSENSG00000113643.41493.485502034.39040-0.445903.826803.13660HepG2EIF2S1
RARSENSG00000113643.41304.363302248.10950-0.785409.159508.00460HepG2EIF4A3
RARSENSG00000113643.42262.555902811.74570-0.313504.795304.04270HepG2ETF1
RARSENSG00000113643.41838.147601334.892600.461405.151203.66260HepG2FASTKD2
RARSENSG00000113643.41833.925402268.64480-0.306902.180801.56300HepG2FXR1
RARSENSG00000113643.41407.183502104.29210-0.580505.644904.70820HepG2G3BP1
RARSENSG00000113643.41760.913702234.24840-0.343502.630901.76380HepG2G3BP2
RARSENSG00000113643.4997.220701680.54980-0.752908.329507.17800HepG2HNRNPC
RARSENSG00000113643.41518.186301994.34440-0.393606.235105.21690HepG2HNRNPF
RARSENSG00000113643.41802.601102306.85880-0.355807.112206.07710HepG2HNRNPL
RARSENSG00000113643.41469.446501802.62810-0.294801.966301.42770HepG2HNRNPLL
RARSENSG00000113643.41443.454601180.016700.290602.470101.56830HepG2HNRNPM
RARSENSG00000113643.41387.194901669.44420-0.267202.276301.72120HepG2HNRNPU
RARSENSG00000113643.41460.623301963.86590-0.427105.301304.33130HepG2IGF2BP1
RARSENSG00000113643.41684.225602269.43850-0.430303.628402.87730HepG2MAGOH
RARSENSG00000113643.41182.234801838.30010-0.636904.380303.14410HepG2MTPAP
RARSENSG00000113643.41790.765502511.19790-0.487807.814106.54930HepG2NOL12
RARSENSG00000113643.41218.695201598.32600-0.391203.227002.42150HepG2NSUN2
RARSENSG00000113643.41110.531101489.02310-0.423102.915602.16180HepG2PPIL4
RARSENSG00000113643.41599.393701259.838400.344202.694701.89650HepG2PRPF8
RARSENSG00000113643.42156.167502544.74680-0.239103.697103.03240HepG2PUM1
RARSENSG00000113643.42170.082602542.86920-0.228701.996201.42030HepG2PUM2
RARSENSG00000113643.41852.806902369.34530-0.354804.601403.82570HepG2QKI
RARSENSG00000113643.42252.230201516.675200.570303.130402.38320HepG2RAVER1
RARSENSG00000113643.41992.434002434.64370-0.289204.083703.44950HepG2NELFE
RARSENSG00000113643.41718.024702267.46330-0.400307.110906.19100HepG2RECQL
RARSENSG00000113643.41523.569502148.30760-0.495705.707804.77810HepG2RPLP0
RARSENSG00000113643.41064.730001486.75520-0.481705.433004.58320HepG2SAFB2
RARSENSG00000113643.41942.269702298.58760-0.243003.472502.70170HepG2SLBP
RARSENSG00000113643.43179.834302654.304900.260504.310203.72490HepG2SRFBP1
RARSENSG00000113643.43558.756702377.364400.5819017.1557016.19120HepG2SRSF1
RARSENSG00000113643.41889.926602366.90610-0.324704.878704.08560HepG2SRSF5
RARSENSG00000113643.41462.579801959.35670-0.421907.042906.01410HepG2SRSF7
RARSENSG00000113643.41496.301601934.08060-0.370206.324205.54970HepG2SRSF9
RARSENSG00000113643.42191.845902691.79340-0.296405.047204.24990HepG2SUCLG1
RARSENSG00000113643.41233.862901625.46170-0.397702.338901.71040HepG2SUPV3L1
RARSENSG00000113643.41720.439402136.76490-0.312703.978903.32550HepG2TAF15
RARSENSG00000113643.41352.536501756.82690-0.377303.210802.43510HepG2TARDBP
RARSENSG00000113643.41635.335101963.50510-0.263802.345801.57380HepG2TIA1
RARSENSG00000113643.41081.453001622.43990-0.585205.288504.64280HepG2TIAL1
RARSENSG00000113643.41299.848601636.66110-0.332402.960302.38160HepG2TRIM56
RARSENSG00000113643.41763.597202341.99640-0.409204.735903.55900HepG2TUFM
RARSENSG00000113643.41823.868901463.000600.318002.293501.71680HepG2U2AF1
RARSENSG00000113643.41793.423901545.254300.214802.163701.62040HepG2UTP3
RARSENSG00000113643.41101.000501308.56770-0.249202.754602.08340HepG2ZC3H8
RARSENSG00000113643.41334.209701760.28220-0.399807.876807.07590HepG2ZNF622
RARSENSG00000113643.44614.956803644.917600.340303.709202.53230K562AKAP8
RARSENSG00000113643.44764.810203451.384300.465106.391305.36760K562AKAP8L
RARSENSG00000113643.45312.936103621.424900.5529013.4233011.24090K562ATP5C1
RARSENSG00000113643.42284.825202779.87220-0.282904.409003.17990K562BCLAF1
RARSENSG00000113643.41817.481902189.01380-0.268302.386801.65350K562CPSF6
RARSENSG00000113643.41773.570402108.94760-0.249902.656101.62150K562CSTF2
RARSENSG00000113643.42304.436702876.14390-0.319704.303702.77180K562DDX21
RARSENSG00000113643.44704.815604002.261100.233203.455902.73880K562DDX47
RARSENSG00000113643.44769.883203713.631500.361006.643505.19530K562DKC1
RARSENSG00000113643.42399.739003358.20040-0.484809.808608.57980K562EIF2S2
RARSENSG00000113643.42088.473803237.21350-0.632305.175404.05200K562EIF4A3
RARSENSG00000113643.44386.398005824.30550-0.409008.164206.57020K562EIF4G2
RARSENSG00000113643.43495.932202724.446400.359603.973102.04090K562FASTKD2
RARSENSG00000113643.41785.949002227.14530-0.318502.517701.70240K562FMR1
RARSENSG00000113643.43074.638702251.347200.449505.800903.76070K562FUS
RARSENSG00000113643.42915.149503366.57910-0.207702.208501.65650K562FXR1
RARSENSG00000113643.45302.396003755.433900.497603.808702.94990K562G3BP2
RARSENSG00000113643.42663.422502090.020800.349703.422302.54170K562GPKOW
RARSENSG00000113643.41413.796602407.20700-0.7678012.4906011.29750K562HNRNPC
RARSENSG00000113643.41675.540002149.35480-0.359303.495102.20210K562HNRNPF
RARSENSG00000113643.45392.095904155.176500.375803.410602.02130K562HNRNPK
RARSENSG00000113643.43062.373602368.173200.370802.850501.90490K562HNRNPM
RARSENSG00000113643.44973.974903662.610700.441404.393803.32260K562KIF1C
RARSENSG00000113643.43062.825704371.81710-0.513405.521304.32020K562MAGOH
RARSENSG00000113643.44599.077503506.158100.391402.712201.64950K562MAK16
RARSENSG00000113643.43316.082904363.23080-0.395903.553402.49440K562MATR3
RARSENSG00000113643.45350.218104103.073000.382804.042702.91000K562MBNL1
RARSENSG00000113643.44039.452102875.972000.490003.939202.83370K562NAA15
RARSENSG00000113643.43930.306603232.447000.281903.240201.90270K562NCBP2
RARSENSG00000113643.42748.579603176.79520-0.208903.799602.94050K562NSUN2
RARSENSG00000113643.43525.271802242.050900.652809.629608.22220K562PRPF8
RARSENSG00000113643.45549.248006759.53420-0.284603.804702.53440K562PUM1
RARSENSG00000113643.45025.842806622.70130-0.398108.140406.46850K562PUM2
RARSENSG00000113643.45112.990603422.478300.579008.203707.31710K562PUS1
RARSENSG00000113643.44637.885703334.977800.475709.759408.67180K562RBM15
RARSENSG00000113643.43362.754804286.70350-0.350202.420601.40950K562NELFE
RARSENSG00000113643.43669.415702283.996500.683906.468705.20950K562RPS19
RARSENSG00000113643.42293.718203134.61170-0.450608.486707.11800K562SF3A3
RARSENSG00000113643.41592.248402293.94250-0.526805.523203.94190K562SRSF4
RARSENSG00000113643.41671.834102171.17470-0.377002.299101.37660K562SUPV3L1
RARSENSG00000113643.42504.492401978.482500.340003.686902.74000K562SYNCRIP
RARSENSG00000113643.43255.695104214.30020-0.372302.591701.90560K562TARDBP
RARSENSG00000113643.43150.378204065.05020-0.367703.235302.34070K562TIA1
RARSENSG00000113643.45040.539603759.995200.422706.617805.38330K562U2AF2
RARSENSG00000113643.44993.383903470.388200.524802.730301.45100K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RARS is not available on ENCORE database.





4 RBPs can affect the splicing of RARS :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERARSENSG00000113643.4chr5+167933726167933773167933008167933204167937585167937691-0.075000.000020.00035excludedK562AQR
SERARSENSG00000113643.4chr5+1679151571679152751679134741679135481679156061679157410.055000.000000.00018includedK562EFTUD2
SERARSENSG00000113643.4chr5+1679151571679152751679134741679135481679156061679157410.224000.000000.00000includedK562HNRNPC
A3SSRARSENSG00000113643.4chr5+1679222951679223381679223191679223381679215141679216550.111000.000000.00000longerK562AQR
MXERARSENSG00000113643.4chr5+1679196631679198521679208981679210071679156061679157411679215541679216550.104000.009320.092181includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RARS is not avaliable on ENCORE database.