RAB35

General Information

Gene Name       : RAB35
Gene ID             : ENSG00000111737.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RAB35)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB35ENSG00000111737.1118.2630.3924.33ENCSR000AEF
HepG2RAB35ENSG00000111737.1129.5319.3524.44ENCSR985KAT
K562RAB35ENSG00000111737.1139.2828.2833.78ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB35 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB35 RNA is bound by 28 proteins.  







eCLIP assay for RAB35 is not avaliable on ENCORE database.





28 proteins are bound to RAB35 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12120533155120533207-3'-UTR,intron-Distal3.562766.83930K562FAM120A
chr12120534800120534853-3'-UTR,CDS,intron-Distal3.163523.68605HepG2AKAP1
chr12120534711120534811-3'-UTR,CDS,intron-Distal5.6201671.65882K562PUM2
chr12120534009120534073-3'-UTR,intron-Distal,intron-Proximal4.621445.41597HepG2UPF1
chr12120534794120534859-3'-UTR,CDS,intron-Distal4.6130215.85891K562UPF1
chr12120533010120533088-3'-UTR,intron-Distal5.0523923.06170K562DDX6
chr12120534864120534926-3'-UTR,CDS,intron-Distal3.595156.92107K562TIA1
chr12120534251120534286-3'-UTR,CDS,intron-Distal3.584377.91779K562UPF1
chr12120533012120533063-3'-UTR,intron-Distal4.0134814.60773K562FAM120A
chr12120534815120534867-3'-UTR,CDS,intron-Distal3.047274.58390K562AKAP1
chr12120534884120534915-3'-UTR,CDS,intron-Distal3.692383.66583K562AKAP1
chr12120533394120533501-3'-UTR,intron-Distal5.4570120.58224HepG2GRSF1
chr12120533227120533293-3'-UTR,intron-Distal6.3226718.11656K562UPF1
chr12120533166120533214-3'-UTR,intron-Distal4.882465.26336K562DDX6
chr12120534592120534757-3'-UTR,CDS,intron-Distal,intron-Proximal4.544017.98114HepG2AKAP1
chr12120533018120533093-3'-UTR,intron-Distal3.867994.80893K562APOBEC3C
chr12120533237120533313-3'-UTR,intron-Distal3.611785.40194HepG2FAM120A
chr12120533246120533305-3'-UTR,intron-Distal3.131867.99680K562FAM120A
chr12120533015120533074-3'-UTR,intron-Distal3.081853.84817HepG2FAM120A
chr12120533012120533078-3'-UTR,intron-Distal4.9334642.09113K562UPF1
chr12120534328120534380-3'-UTR,CDS,intron-Distal3.7738810.73443K562UPF1
chr12120533012120533073-3'-UTR,intron-Distal3.147914.86780K562GTF2F1
chr12120534642120534745-3'-UTR,CDS,intron-Distal,intron-Proximal3.8853211.56027K562AKAP1
chr12120533012120533068-3'-UTR,intron-Distal5.1161121.36786K562PABPC4
chr12120534866120534927-3'-UTR,CDS,intron-Distal3.215448.63173K562UPF1
chr12120534457120534519-3'-UTR,CDS,intron-Distal4.296974.93188HepG2UPF1
chr12120533413120533473-3'-UTR,intron-Distal4.808836.19628HepG2FAM120A
chr12120534416120534508-3'-UTR,CDS,intron-Distal3.9003712.18695K562UPF1
chr12120536852120536955-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.832766.51828K562YBX3
chr12120534871120534931-3'-UTR,CDS,intron-Distal4.471855.31599HepG2AKAP1
chr12120534105120534154-3'-UTR,intron-Distal,intron-Proximal4.2167111.07538K562FAM120A
chr12120533164120533209-3'-UTR,intron-Distal6.1711415.26585K562UPF1
chr12120534806120534867-3'-UTR,CDS,intron-Distal3.922456.10933HepG2UPF1
chr12120533020120533083-3'-UTR,intron-Distal3.258646.98014HepG2RBFOX2
chr12120534421120534485-3'-UTR,CDS,intron-Distal4.674797.76684K562FAM120A
chr12120534421120534539-3'-UTR,CDS,intron-Distal3.956005.63973HepG2AKAP1
chr12120533810120533827-3'-UTR,intron-Distal4.450688.66095K562UPF1
chr12120533018120533072-3'-UTR,intron-Distal4.683405.96444HepG2PCBP2
chr12120534101120534206-3'-UTR,intron-Distal,intron-Proximal6.0789348.24205K562UPF1
chr12120533714120533750-3'-UTR,intron-Distal5.6836610.90122K562UPF1
chr12120533420120533480-3'-UTR,intron-Distal5.0921719.05397K562UPF1
chr12120534615120534746-3'-UTR,CDS,intron-Distal,intron-Proximal5.7430712.58146HepG2UPF1
chr12120533017120533108-3'-UTR,intron-Distal4.606958.92380K562DDX55
chr12120533019120533097-3'-UTR,intron-Distal3.450033.27682HepG2LARP4
chr12120534416120534503-3'-UTR,CDS,intron-Distal4.428947.33240HepG2PCBP2
chr12120533414120533498-3'-UTR,intron-Distal3.831163.25631HepG2PRPF4
chr12120533316120533383-3'-UTR,intron-Distal4.921996.95882HepG2GRSF1
chr12120533386120533485-3'-UTR,intron-Distal5.228949.46220HepG2UPF1
chr12120533234120533330-3'-UTR,intron-Distal3.408795.45050HepG2CSTF2T
chr12120533379120533486-3'-UTR,intron-Distal5.6602223.30562K562FAM120A
chr12120533012120533071-3'-UTR,intron-Distal4.399726.04687K562ZC3H11A
chr12120534419120534486-3'-UTR,CDS,intron-Distal5.092755.18845K562PCBP1
chr12120534867120534934-3'-UTR,CDS,intron-Distal5.108447.21030HepG2UPF1
chr12120533128120533171-3'-UTR,intron-Distal5.7296513.81571K562PABPC4
chr12120554469120554560-5'-UTR,intron-Distal,intron-Proximal4.732978.39621K562DDX3X
chr12120541671120541821-CDS,intron-Distal,intron-Proximal3.795274.70265HepG2AQR
chr12120536905120536958-CDS,intron-Distal,intron-Proximal4.018283.98636K562LIN28B
chr12120539156120539206-intron-Distal4.158834.10564HepG2CSTF2T
chr12120539126120539210-intron-Distal4.059383.43867K562CSTF2T
chr12120552734120552782-intron-Distal3.482414.28420HepG2HNRNPM
chr12120540410120540473-intron-Distal3.437243.64784K562EWSR1
chr12120540369120540482-intron-Distal4.158195.17126HepG2FKBP4
chr12120538381120538446-intron-Distal4.225934.72743K562NONO
chr12120540138120540269-intron-Distal4.468494.78128K562HNRNPM
chr12120539540120539600-intron-Distal4.715193.11886K562DROSHA
chr12120540175120540226-intron-Distal4.567375.72853HepG2HNRNPM
chr12120540385120540462-intron-Distal4.688225.42636K562NONO
chr12120539552120539612-intron-Distal3.851863.59342K562CSTF2T
chr12120539538120539597-intron-Distal3.095405.21772HepG2CSTF2T
chr12120537763120537855-intron-Distal3.522204.22628K562EWSR1
chr12120546274120546327-intron-Distal,intron-Proximal4.511035.07796HepG2SF3B4
chr12120538181120538231-intron-Distal4.129614.33692K562NONO
chr12120537742120537806-intron-Distal3.546153.25786HepG2FAM120A
chr12120538381120538428-intron-Distal3.192723.36199K562EWSR1
chr12120540398120540484-intron-Distal4.025127.48189HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB35 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB35 is not available on ENCORE database.

  • 73 RBPs can affect the levels of RAB35.  








The Knockdown/knockout RNA-Seq assay for RAB35 is not available on ENCORE database.





73 RBPs can affect the gene expression of RAB35 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB35ENSG00000111737.7869.90320716.980300.278802.550101.96270HepG2ACO1
RAB35ENSG00000111737.71197.71530818.994700.548304.025703.40120HepG2AKAP1
RAB35ENSG00000111737.7864.78820720.293200.263702.146001.45880HepG2AKAP8L
RAB35ENSG00000111737.7385.65790638.57770-0.727506.364605.35470HepG2CPSF6
RAB35ENSG00000111737.71202.92230730.985700.7185013.5573012.34460HepG2CELF1
RAB35ENSG00000111737.71059.53010784.537500.433403.018902.36940HepG2DDX3X
RAB35ENSG00000111737.7923.97370673.928100.455202.891902.26170HepG2DDX6
RAB35ENSG00000111737.7532.46920442.099400.268201.858601.30490HepG2DNAJC2
RAB35ENSG00000111737.7579.95870419.392900.467502.567701.67710HepG2EEF2
RAB35ENSG00000111737.7524.08220340.399400.622503.789102.74060HepG2EIF3D
RAB35ENSG00000111737.71043.44110697.096300.581803.705002.91480HepG2EIF4B
RAB35ENSG00000111737.7404.69320517.01120-0.353402.025201.34380HepG2FUBP3
RAB35ENSG00000111737.7377.27340539.57270-0.516202.541801.46950HepG2FUS
RAB35ENSG00000111737.7919.86480722.379800.348602.093001.48820HepG2FXR1
RAB35ENSG00000111737.7422.03440303.065700.477602.556301.70030HepG2GEMIN5
RAB35ENSG00000111737.7557.75070723.81320-0.376002.039301.48450HepG2GPKOW
RAB35ENSG00000111737.7835.69660715.924800.223101.926901.35190HepG2HNRNPL
RAB35ENSG00000111737.7542.17720690.75410-0.349401.959901.42230HepG2HNRNPLL
RAB35ENSG00000111737.7598.61000497.589600.266601.872301.36470HepG2HNRNPU
RAB35ENSG00000111737.71079.55290681.161400.664306.509905.51390HepG2IGF2BP2
RAB35ENSG00000111737.71006.01300722.631900.477203.544802.80100HepG2MAGOH
RAB35ENSG00000111737.71404.98530726.677800.9511011.4725010.25160HepG2MATR3
RAB35ENSG00000111737.7523.99040356.220400.556702.307801.34470HepG2METAP2
RAB35ENSG00000111737.7476.03690704.62000-0.565802.250101.38170HepG2MTPAP
RAB35ENSG00000111737.7446.94890612.53230-0.454702.816502.06100HepG2NSUN2
RAB35ENSG00000111737.7523.55080655.58730-0.324502.519301.77750HepG2PRPF4
RAB35ENSG00000111737.71040.46350789.765600.397605.801505.00760HepG2PUM1
RAB35ENSG00000111737.71204.27110789.180300.609607.602306.51470HepG2PUM2
RAB35ENSG00000111737.7662.43620818.70990-0.305602.180101.61440HepG2QKI
RAB35ENSG00000111737.7775.98460492.784300.655003.214202.45780HepG2RAVER1
RAB35ENSG00000111737.71448.764901056.945000.454806.292405.58790HepG2RBM22
RAB35ENSG00000111737.7637.98300783.59190-0.296602.304201.73500HepG2RECQL
RAB35ENSG00000111737.7553.41520331.277800.740206.702305.79210HepG2RPS19
RAB35ENSG00000111737.71301.81540731.347600.831807.671506.51160HepG2SF3A3
RAB35ENSG00000111737.7770.32480516.768300.575808.295107.27640HepG2SMN1
RAB35ENSG00000111737.7388.61220760.71940-0.969007.284806.01170HepG2SNRNP70
RAB35ENSG00000111737.7923.887901193.77340-0.369704.467103.87430HepG2SRFBP1
RAB35ENSG00000111737.71087.39580735.740100.563502.664101.68370HepG2SRSF3
RAB35ENSG00000111737.71083.50650734.573700.560608.756907.72560HepG2SRSF5
RAB35ENSG00000111737.7773.467101036.46560-0.422305.394404.72520HepG2SSB
RAB35ENSG00000111737.71174.52200835.398700.491407.988607.02270HepG2SUCLG1
RAB35ENSG00000111737.7360.18190738.43480-1.0357017.1523015.92660HepG2TAF15
RAB35ENSG00000111737.7506.64460673.44190-0.410602.569701.86680HepG2TARDBP
RAB35ENSG00000111737.7948.12430726.844800.383303.209002.26040HepG2TUFM
RAB35ENSG00000111737.71244.45880696.239300.8378010.542809.29750HepG2U2AF1
RAB35ENSG00000111737.71262.72690557.956401.178204.021202.81960HepG2U2AF2
RAB35ENSG00000111737.7478.32120359.221200.413001.972101.33120HepG2UCHL5
RAB35ENSG00000111737.7891.57020626.192000.509606.697305.83400HepG2UTP3
RAB35ENSG00000111737.71192.61770713.328900.7414017.9662016.87470HepG2ZNF622
RAB35ENSG00000111737.72220.418201735.516600.355402.272301.73280K562AQR
RAB35ENSG00000111737.7600.10820781.67280-0.381302.383601.58000K562BOP1
RAB35ENSG00000111737.72086.376301529.282100.448007.987906.95860K562DDX47
RAB35ENSG00000111737.71262.660201606.27810-0.347304.294803.42720K562EIF2S2
RAB35ENSG00000111737.71214.13390885.456500.455303.233202.10870K562EIF3D
RAB35ENSG00000111737.71021.58080620.531400.7191010.795409.21750K562EIF3G
RAB35ENSG00000111737.7950.89270658.966200.529005.003803.89910K562EIF4A3
RAB35ENSG00000111737.7417.76890642.70770-0.621504.615303.09410K562FKBP4
RAB35ENSG00000111737.7357.77760548.59550-0.616705.639503.64100K562FUS
RAB35ENSG00000111737.71536.15650685.293301.1644025.4857023.76240K562FXR1
RAB35ENSG00000111737.7273.95650435.96040-0.670303.859202.99220K562G3BP2
RAB35ENSG00000111737.71174.03090919.265100.352802.163201.34490K562HNRNPM
RAB35ENSG00000111737.7482.72820677.57550-0.489202.604301.70270K562KRR1
RAB35ENSG00000111737.71162.21550757.893200.616707.765206.33100K562MAGOH
RAB35ENSG00000111737.7988.92840756.309600.386803.314102.29350K562MATR3
RAB35ENSG00000111737.7895.37760674.281900.409003.188902.13880K562PCBP2
RAB35ENSG00000111737.71213.35280804.721000.592305.917804.81930K562PRPF8
RAB35ENSG00000111737.71345.28120736.363400.8693015.8739014.35040K562PTBP1
RAB35ENSG00000111737.72818.067702136.159600.399604.782803.71300K562PUF60
RAB35ENSG00000111737.7936.67980705.918900.408003.199602.28970K562RBM22
RAB35ENSG00000111737.71233.53820819.726900.589504.984303.88640K562RPS19
RAB35ENSG00000111737.7782.72770473.743300.724306.198104.62160K562RPS3
RAB35ENSG00000111737.71339.282401000.393600.420803.313602.12770K562SAFB
RAB35ENSG00000111737.7654.77240453.151300.530904.981203.81870K562SF3B4
RAB35ENSG00000111737.71208.57140721.915700.7433010.965409.56600K562SRSF1
RAB35ENSG00000111737.7624.47380457.328500.449303.039501.92320K562SRSF4
RAB35ENSG00000111737.71456.040201126.078700.370603.799202.83560K562SYNCRIP
RAB35ENSG00000111737.7267.71340427.93230-0.676702.874201.37660K562TAF15
RAB35ENSG00000111737.7937.32340730.552400.359502.417101.75310K562TARDBP
RAB35ENSG00000111737.7941.95360704.719600.418503.735402.76440K562TIA1
RAB35ENSG00000111737.7910.532301214.19380-0.415204.068903.00140K562WDR3
RAB35ENSG00000111737.71497.986301262.564700.246602.823601.96910K562WDR43
RAB35ENSG00000111737.71407.663501955.43410-0.474202.537901.71810K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB35 is not available on ENCORE database.





4 RBPs can affect the splicing of RAB35 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB35ENSG00000111737.7chr12-120536614120536739120535049120535177120536833120536910-0.159000.000140.00542excludedHepG2HNRNPK
SERAB35ENSG00000111737.7chr12-120536614120536739120535049120535177120536833120536910-0.093000.001140.01584excludedHepG2U2AF2
SERAB35ENSG00000111737.7chr12-120536614120536739120534169120535177120536833120536958-0.092000.001450.04077excludedHepG2SF3A3
A3SSRAB35ENSG00000111737.7chr12-1205462201205463331205462201205462711205544021205545400.157000.005790.03288longerK562AQR
A3SSRAB35ENSG00000111737.7chr12-1205350691205353161205350691205351771205366141205367390.072000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB35 is not avaliable on ENCORE database.