PPTC7

General Information

Gene Name : PPTC7
Gene ID : ENSG00000196850.5
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PPTC7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PPTC7	ENSG00000196850.5	23.93	20.30	22.12	ENCSR000AEF
HepG2	PPTC7	ENSG00000196850.5	7.00	11.48	9.24	ENCSR985KAT
K562	PPTC7	ENSG00000196850.5	13.17	13.14	13.16	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PPTC7 is not avaliable on ENCORE database.

Proteins bound to RNA

PPTC7 RNA is bound by 14 proteins.

CanvasJS.com

eCLIP assay for PPTC7 is not avaliable on ENCORE database.

14 proteins are bound to PPTC7 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	110971079	110971164	-	3'-UTR,intron-Distal	6.16930	15.61756	K562	PUM2
chr12	111020922	111021077	-	5'-UTR,intron-Distal	5.29760	15.31047	HepG2	DDX3X
chr12	110974869	110974939	-	CDS,intron-Distal	4.82982	13.13232	K562	SF3B4
chr12	110977570	110977632	-	CDS,intron-Distal,intron-Proximal	5.23465	9.11053	K562	PRPF8
chr12	110973411	110973468	-	3'-UTR,intron-Distal	5.21999	8.15847	K562	PUM2
chr12	110974705	110974826	-	3'-UTR,intron-Distal	3.30663	7.79680	K562	RBM15
chr12	110971690	110971783	-	3'-UTR,intron-Distal	3.90689	7.04449	K562	RBFOX2
chr12	110977731	110977804	-	CDS,intron-Distal,intron-Proximal	5.32045	6.91748	K562	SF3B4
chr12	110983583	110983684	-	intron-Distal,intron-Proximal	4.28459	6.48405	K562	AQR
chr12	110977683	110977784	-	CDS,intron-Distal,intron-Proximal	3.56912	6.12893	K562	BUD13
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 22 entries

eCLIP assay for PPTC7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PPTC7 is not available on ENCORE database.
89 RBPs can affect the levels of PPTC7.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PPTC7 is not available on ENCORE database.

89 RBPs can affect the gene expression of PPTC7 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PPTC7	ENSG00000196850.4	3743.95030	1345.44600	1.47640	42.41980	40.23690	K562	PUS1
PPTC7	ENSG00000196850.4	182.04320	523.45680	-1.52380	29.17810	27.43200	HepG2	ZC3H8
PPTC7	ENSG00000196850.4	1908.42180	888.15610	1.10340	28.32520	27.16210	HepG2	SRSF1
PPTC7	ENSG00000196850.4	2543.57270	1310.91290	0.95620	27.74950	25.78630	K562	RBM15
PPTC7	ENSG00000196850.4	1209.21240	687.51340	0.81450	17.62060	16.30400	HepG2	UTP3
PPTC7	ENSG00000196850.4	1275.59900	783.18300	0.70370	17.17960	16.10730	HepG2	ZNF622
PPTC7	ENSG00000196850.4	1909.68400	1237.26640	0.62610	15.52450	14.59110	HepG2	SRFBP1
PPTC7	ENSG00000196850.4	245.74940	719.70320	-1.55020	15.96850	14.47160	HepG2	TARDBP
PPTC7	ENSG00000196850.4	336.81440	669.34210	-0.99080	14.44210	13.45750	HepG2	TIAL1
PPTC7	ENSG00000196850.4	1257.60970	637.03620	0.98110	14.70650	13.21840	HepG2	U2AF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 100 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PPTC7 is not available on ENCORE database.

3 RBPs can affect the splicing of PPTC7 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PPTC7	ENSG00000196850.4	chr12	-	110975948	110976078			110969119	110974900	110977626	110977750	-0.17600	0.00000	0.00000	excluded	K562	PUS1
MXE	PPTC7	ENSG00000196850.4	chr12	-	110977626	110977750	110983684	110983883	110969119	110974900	110989593	110989773	-0.22800	0.00000	0.00001	2included	K562	PUS1
SE	PPTC7	ENSG00000196850.4	chr12	-	110975948	110976078			110969119	110974900	110977626	110977750	-0.09500	0.00015	0.00635	excluded	K562	AGGF1
SE	PPTC7	ENSG00000196850.4	chr12	-	110983684	110983883			110977626	110977750	110989593	110989773	-0.11900	0.00050	0.00682	excluded	K562	AQR
A3SS	PPTC7	ENSG00000196850.4	chr12	-	110983684	110983924			110983684	110983883	110989593	110989837	0.07400	0.00342	0.02069	longer	K562	AQR

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PPTC7

General Information

Functions

Localization

Domains (AlphaFold: PPTC7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PPTC7 is not avaliable on ENCORE database.

14 proteins are bound to PPTC7 RNA:

eCLIP assay for PPTC7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PPTC7 is not available on ENCORE database.

89 RBPs can affect the gene expression of PPTC7 :

The Knockdown/knockout RNA-Seq assay for PPTC7 is not available on ENCORE database.

3 RBPs can affect the splicing of PPTC7 :

The Knockdown/knockout RNA-Seq assay for PPTC7 is not avaliable on ENCORE database.