PHF12

General Information

Gene Name       : PHF12
Gene ID             : ENSG00000109118.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHF12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHF12ENSG00000109118.1315.5818.9517.27ENCSR000AEF
HepG2PHF12ENSG00000109118.1317.3111.4414.38ENCSR985KAT
K562PHF12ENSG00000109118.1314.4114.4114.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHF12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHF12 RNA is bound by 18 proteins.  







eCLIP assay for PHF12 is not avaliable on ENCORE database.





18 proteins are bound to PHF12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172724870427248784-3'-UTR,CDS,intron-Distal,intron-Proximal3.531836.21602K562ZNF622
chr172723348727233536-3'-UTR,CDS,intron-Distal3.304975.23038K562ZNF622
chr172724097327241083-3'-UTR,CDS,intron-Distal,intron-Proximal4.359824.34038HepG2BCLAF1
chr172723336427233433-3'-UTR,CDS,intron-Distal4.727285.85529K562RBM15
chr172723387027233965-3'-UTR,CDS,intron-Distal,intron-Proximal3.725084.49347K562UCHL5
chr172723395327234002-3'-UTR,CDS,intron-Distal4.436844.43680K562ZNF622
chr172724443127244487-3'-UTR,CDS,intron-Distal,intron-Proximal3.087694.81603K562BUD13
chr172723390327233953-3'-UTR,CDS,intron-Distal3.912394.49887K562ZNF622
chr172724431927244410-3'-UTR,CDS,intron-Distal3.942178.84023K562ZNF622
chr172724009027240152-3'-UTR,CDS,intron-Distal,intron-Proximal3.844334.79276K562ZNF622
chr172723234027232422-3'-UTR,intron-Distal3.872006.31999HepG2PCBP2
chr172723575727235784-3'-UTR,intron-Distal,intron-Proximal5.492118.83608K562AQR
chr172723719227237245-3'-UTR,CDS,intron-Distal,intron-Proximal5.556759.23760K562AQR
chr172723814127238210-3'-UTR,CDS,intron-Distal,intron-Proximal3.548043.61259K562ZNF622
chr172725404527254138-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.659488.38544K562SF3B4
chr172724618327246252-3'-UTR,CDS,intron-Distal3.624846.28780K562DDX24
chr172724084727240898-3'-UTR,CDS,intron-Distal,intron-Proximal4.9827017.93663K562AQR
chr172723579527235865-3'-UTR,CDS,intron-Distal,intron-Proximal5.350445.73530K562DDX24
chr172723578827235900-3'-UTR,CDS,intron-Distal,intron-Proximal3.208604.51003HepG2PPIG
chr172724021227240246-3'-UTR,CDS,intron-Distal,intron-Proximal4.152333.77023K562ZNF622
chr172725400627254086-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.456837.32655K562UCHL5
chr172724429927244416-3'-UTR,CDS,intron-Distal,intron-Proximal3.300604.27261HepG2GRWD1
chr172723584927235900-3'-UTR,CDS,intron-Distal,intron-Proximal3.238873.50696K562BUD13
chr172724625227246294-3'-UTR,CDS,intron-Distal,intron-Proximal4.329533.87632K562DDX24
chr172724870527248764-3'-UTR,CDS,intron-Distal,intron-Proximal3.370763.53125K562DDX24
chr172723578727235803-3'-UTR,CDS,intron-Distal,intron-Proximal3.789926.80869K562AQR
chr172723579727235860-3'-UTR,CDS,intron-Distal,intron-Proximal3.228555.12958K562UCHL5
chr172724007727240148-3'-UTR,CDS,intron-Distal,intron-Proximal4.478715.00478HepG2PCBP2
chr172725400627254070-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.292206.82013HepG2PPIG
chr172724424827244349-3'-UTR,CDS,intron-Distal,intron-Proximal3.424584.78164HepG2PRPF8
chr172723469427234742-3'-UTR,intron-Distal,intron-Proximal4.916115.69951K562AQR
chr172727671627276813-5'-UTR,intron-Distal3.566483.79474HepG2FAM120A
chr172727791227277985-5'-UTR,CDS,intron-Distal,intron-Proximal4.054103.38968HepG2BCLAF1
chr172727715027277245-5'-UTR,CDS,intron-Distal3.105633.63043HepG2GRWD1
chr172727717727277267-5'-UTR,CDS,intron-Distal,intron-Proximal3.754964.97821K562BUD13
chr172727720827277265-5'-UTR,CDS,intron-Distal,intron-Proximal3.159223.47879HepG2PPIG
chr172727704027277122-5'-UTR,CDS,intron-Distal,intron-Proximal4.2820312.48166HepG2PRPF8
chr172727708927277135-5'-UTR,CDS,intron-Distal3.255563.36945K562ZNF622
chr172727722327277267-5'-UTR,CDS,intron-Distal,intron-Proximal4.171965.47493HepG2BUD13
chr172727671227276820-5'-UTR,intron-Distal4.009586.32385HepG2NKRF
chr172727153427271556-5'-UTR,intron-Distal3.010185.09741K562UPF1
chr172725110627251187-CDS,intron-Distal,intron-Proximal3.386874.89070K562UCHL5
chr172723967127239744-CDS,intron-Distal4.6455117.90596K562RBM15
chr172725107527251204-CDS,intron-Distal,intron-Proximal4.335344.21087HepG2GRWD1
chr172725396627254012-CDS,intron-Distal,intron-Proximal4.662636.99120K562AQR
chr172727727827277347-CDS,intron-Distal,intron-Proximal4.951964.69961K562SF3B4
chr172725122527251283-CDS,intron-Distal,intron-Proximal3.076134.00731K562UCHL5
chr172727790627277975-CDS,intron-Distal,intron-Proximal3.289766.00978HepG2PPIG
chr172724004827240109-CDS,intron-Distal,intron-Proximal3.990026.75060K562RBM15
chr172727786227277923-CDS,intron-Distal,intron-Proximal4.103314.00320K562AQR
chr172723997727240035-CDS,intron-Distal,intron-Proximal3.868205.42720K562UCHL5
chr172725127827251362-CDS,intron-Distal,intron-Proximal3.239725.37841K562SF3B4
chr172723965127239743-CDS,intron-Distal4.725085.29868K562UCHL5
chr172726865927268701-intron-Distal3.829757.71860K562UPF1
chr172726855027268624-intron-Distal3.3315211.08196K562UPF1
chr172727142327271500-intron-Distal,intron-Proximal3.331597.03321K562RBFOX2
chr172727524127275307-intron-Distal4.951715.72853HepG2HNRNPM
chr172726923127269279-intron-Distal3.1818810.10499K562UPF1
chr172727060527270653-intron-Distal3.1414511.18947K562UPF1
chr172727192927271975-intron-Distal3.037706.54251K562UPF1
chr172724178927241908-intron-Distal4.570895.18738K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHF12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHF12 is not available on ENCORE database.

  • 71 RBPs can affect the levels of PHF12.  








The Knockdown/knockout RNA-Seq assay for PHF12 is not available on ENCORE database.





71 RBPs can affect the gene expression of PHF12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHF12ENSG00000109118.91020.81180842.656300.276602.763802.15650HepG2ACO1
PHF12ENSG00000109118.91081.36930846.626000.353003.891302.99380HepG2AKAP8L
PHF12ENSG00000109118.91086.924801308.13340-0.267302.591401.92400HepG2AUH
PHF12ENSG00000109118.91108.08370842.486000.395205.540904.65940HepG2CKAP4
PHF12ENSG00000109118.91124.457201548.73920-0.461903.475402.71270HepG2CPSF6
PHF12ENSG00000109118.91015.40070792.987500.356602.140001.58330HepG2DDX3X
PHF12ENSG00000109118.9967.34620681.352300.505503.413502.73550HepG2DDX6
PHF12ENSG00000109118.9968.29260654.842100.564204.460903.71810HepG2EIF2S1
PHF12ENSG00000109118.91647.197501315.006200.324803.060601.82540HepG2EIF2S2
PHF12ENSG00000109118.9989.08820739.976200.418502.936702.00920HepG2EIF3D
PHF12ENSG00000109118.91099.38560704.673200.641604.355603.50340HepG2EIF4B
PHF12ENSG00000109118.92026.573901501.915900.432107.088406.20090HepG2ETF1
PHF12ENSG00000109118.91013.72180823.437100.299802.121601.39260HepG2EWSR1
PHF12ENSG00000109118.91112.50850730.314800.607105.474604.52350HepG2FXR1
PHF12ENSG00000109118.9952.41550677.352100.491603.464802.72380HepG2G3BP1
PHF12ENSG00000109118.91021.72650804.503300.344703.773502.64650HepG2HDGF
PHF12ENSG00000109118.91166.24690686.165200.765109.143107.93170HepG2HNRNPK
PHF12ENSG00000109118.9998.74090646.274300.627902.219201.34710HepG2IGF2BP3
PHF12ENSG00000109118.91035.28310889.078800.219502.008001.37160HepG2ILF2
PHF12ENSG00000109118.9919.47990730.570800.331701.881101.33550HepG2MAGOH
PHF12ENSG00000109118.91339.75790751.895800.833309.501108.36740HepG2NCBP2
PHF12ENSG00000109118.9862.74800669.471400.365802.108001.46930HepG2PABPC4
PHF12ENSG00000109118.9913.65280665.580000.456905.593604.77750HepG2PCBP1
PHF12ENSG00000109118.91107.89590677.271700.7099012.8536011.84700HepG2PTBP1
PHF12ENSG00000109118.91277.758901070.686600.255001.927201.36120HepG2PUM2
PHF12ENSG00000109118.91126.28580858.302000.391905.200504.40450HepG2PUS1
PHF12ENSG00000109118.91167.27170733.461200.670209.958508.87730HepG2QKI
PHF12ENSG00000109118.9884.47360665.678600.409903.409402.66730HepG2RBM25
PHF12ENSG00000109118.91214.85190753.722500.6886012.2221011.23840HepG2NELFE
PHF12ENSG00000109118.9999.95640702.019000.510306.787005.88370HepG2RECQL
PHF12ENSG00000109118.91060.56130720.064600.558506.088705.21740HepG2RPS19
PHF12ENSG00000109118.92371.591201582.931900.583204.048403.22560HepG2SF3A3
PHF12ENSG00000109118.91170.19950705.092900.7308013.6925012.53260HepG2SF3B4
PHF12ENSG00000109118.91170.16630903.910200.372405.326704.48300HepG2SMN1
PHF12ENSG00000109118.91226.83060996.576500.299803.178202.51480HepG2SRSF5
PHF12ENSG00000109118.9774.72440598.769700.371603.769903.14760HepG2SRSF9
PHF12ENSG00000109118.91015.747601231.01830-0.277302.887202.36620HepG2SSB
PHF12ENSG00000109118.91387.979401133.393300.292203.469202.78790HepG2SUCLG1
PHF12ENSG00000109118.9800.46180661.565000.274802.043201.54850HepG2TAF15
PHF12ENSG00000109118.9760.75360607.846800.323602.311301.54550HepG2TIA1
PHF12ENSG00000109118.91253.30360986.077800.345902.922402.02150HepG2TUFM
PHF12ENSG00000109118.92255.884501497.351100.591207.219206.21060HepG2U2AF1
PHF12ENSG00000109118.92411.839401077.275001.162604.179302.95420HepG2U2AF2
PHF12ENSG00000109118.91334.448601043.736000.354402.098501.37550HepG2UBE2L3
PHF12ENSG00000109118.95221.131301578.635301.7256062.7764060.34090K562AQR
PHF12ENSG00000109118.92537.004701893.710300.421803.970702.92260K562BOP1
PHF12ENSG00000109118.91495.176801002.155000.577106.512204.72390K562CCAR1
PHF12ENSG00000109118.91992.235802506.47730-0.331305.195504.34150K562DDX47
PHF12ENSG00000109118.91233.41050982.540100.328003.323001.85550K562DDX6
PHF12ENSG00000109118.91623.640501121.991500.533105.429103.44080K562DHX30
PHF12ENSG00000109118.91184.55830936.947100.338202.180301.36930K562EFTUD2
PHF12ENSG00000109118.91398.509601064.472400.393705.237703.55130K562EIF2S1
PHF12ENSG00000109118.91640.282201339.817900.291803.077802.32620K562EIF2S2
PHF12ENSG00000109118.91242.57500911.784400.446505.540103.81940K562EIF4B
PHF12ENSG00000109118.92100.272101699.535300.305302.550801.34060K562EXOSC5
PHF12ENSG00000109118.92341.170801736.763200.430703.822502.73410K562FTO
PHF12ENSG00000109118.92404.056101922.164000.322602.114401.41670K562GPKOW
PHF12ENSG00000109118.91489.041301136.668600.389503.599002.28070K562HNRNPF
PHF12ENSG00000109118.91330.61530984.334200.434803.488702.08470K562HNRNPK
PHF12ENSG00000109118.91060.308001475.17510-0.476403.785902.68620K562HNRNPM
PHF12ENSG00000109118.91600.042302431.72570-0.603907.996306.65950K562HSPD1
PHF12ENSG00000109118.92490.445501641.632200.601204.128802.96770K562KRR1
PHF12ENSG00000109118.92240.162001876.302000.255602.074101.31480K562METAP2
PHF12ENSG00000109118.92557.807302015.867400.343407.855506.68680K562NSUN2
PHF12ENSG00000109118.91627.054901253.315800.376402.857801.40740K562NUSAP1
PHF12ENSG00000109118.91615.611901141.154900.501505.629604.26810K562PSIP1
PHF12ENSG00000109118.9639.068901006.52440-0.655306.899205.88580K562PTBP1
PHF12ENSG00000109118.91378.01350964.836800.514105.372804.15600K562RBM22
PHF12ENSG00000109118.92611.301001989.089500.392606.294005.10240K562SF3A3
PHF12ENSG00000109118.91484.709901103.629500.427803.939802.41290K562SLBP
PHF12ENSG00000109118.92240.063801718.668200.382105.632903.94980K562SRSF7
PHF12ENSG00000109118.91668.047601097.577700.603706.252504.79040K562TIAL1
PHF12ENSG00000109118.91751.244401166.241300.586407.374205.66560K562TRIM56
PHF12ENSG00000109118.91028.89040775.474900.407803.942902.98550K562U2AF2
PHF12ENSG00000109118.91272.05720934.181100.445303.492202.34160K562UCHL5
PHF12ENSG00000109118.92653.338402137.463900.311804.966304.03380K562UPF1
PHF12ENSG00000109118.92275.812301828.965300.315303.059602.14140K562WDR3
PHF12ENSG00000109118.92169.435701901.877600.189802.207101.44400K562WDR43
PHF12ENSG00000109118.92367.147701778.166400.412704.477803.33810K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHF12 is not available on ENCORE database.





13 RBPs can affect the splicing of PHF12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPHF12ENSG00000109118.9chr17-2725379927253891272509262725132027254008272540810.192000.000070.00294includedHepG2HNRNPK
SEPHF12ENSG00000109118.9chr17-272346072723469027233873272340122723580027235899-0.078000.009710.07933excludedK562AQR
SEPHF12ENSG00000109118.9chr17-2726647027266595272540082725408127277082272772640.306000.001650.02566includedK562PUS1
SEPHF12ENSG00000109118.9chr17-272383472723840227238129272382552723949927240295-0.051000.000180.05556excludedK562PPIL4
SEPHF12ENSG00000109118.9chr17-272346072723469027233873272340122723580027235899-0.066000.001700.05065excludedK562UTP18
SEPHF12ENSG00000109118.9chr17-272537992725389127250926272513202725400827254081-0.093000.001660.04110excludedK562AGGF1
SEPHF12ENSG00000109118.9chr17-272346072723469027233873272340122723580027235899-0.081000.000820.03459excludedK562SF3B1
SEPHF12ENSG00000109118.9chr17-2725379927253891272509262725132027254008272540810.285000.000000.00015includedK562HNRNPK
SEPHF12ENSG00000109118.9chr17-2723772927237851272370722723738727238129272382550.095000.003000.09123includedK562PTBP1
SEPHF12ENSG00000109118.9chr17-272346072723469027233873272340122723580027235899-0.167000.000020.00060excludedK562HNRNPC
A3SSPHF12ENSG00000109118.9chr17-2723724327237479272372432723738727238129272383200.218000.000000.00000longerK562AQR
A3SSPHF12ENSG00000109118.9chr17-2723580027235991272358002723589927237243272374180.104000.000000.00001longerK562AQR
A3SSPHF12ENSG00000109118.9chr17-2723454927234793272345492723469027235800272359910.117000.000680.00493longerK562AQR
A3SSPHF12ENSG00000109118.9chr17-2723812927238320272381292723825527239499272396990.051000.009690.05147longerK562AQR
A3SSPHF12ENSG00000109118.9chr17-2725379927253923272537992725389127254008272540810.473000.011090.05773longerK562AQR
A3SSPHF12ENSG00000109118.9chr17-2724616027246396272461602724629327248705272488260.067000.000000.00002longerK562AQR
A3SSPHF12ENSG00000109118.9chr17-2723387327234118272338732723401227234607272347930.139000.000000.00000longerK562AQR
A3SSPHF12ENSG00000109118.9chr17-2724870527248878272487052724882627250926272513200.071000.002250.01429longerK562AQR
RIPHF12ENSG00000109118.9chr17-272509262725408127250926272513202725400827254081-0.083000.000310.02656excludedK562EIF4G2
RIPHF12ENSG00000109118.9chr17-2725092627254081272509262725132027254008272540810.381000.000000.00000includedK562HNRNPK
RIPHF12ENSG00000109118.9chr17-2725092627254081272509262725132027254008272540810.178000.000080.00329includedK562RBM22
RIPHF12ENSG00000109118.9chr17-2725092627254081272509262725132027254008272540810.177000.000210.00365includedHepG2HNRNPK
RIPHF12ENSG00000109118.9chr17-2725092627254081272509262725132027254008272540810.164000.000000.00005includedK562AQR
MXEPHF12ENSG00000109118.9chr17-2724870527248826272509262725132027246160272462932725400827254081-0.232000.000010.000392includedK562DROSHA
MXEPHF12ENSG00000109118.9chr17-2725092627254081272770822727726427246160272462932727791227277972-0.071000.016830.095922includedK562AQR
MXEPHF12ENSG00000109118.9chr17-27233873272340122723724327237387272322672723353527238129272382550.339000.000100.001191includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHF12 is not avaliable on ENCORE database.