NAB2

General Information

Gene Name       : NAB2
Gene ID             : ENSG00000166886.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NAB2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NAB2ENSG00000166886.125.0011.588.29ENCSR000AEF
HepG2NAB2ENSG00000166886.1211.737.749.73ENCSR985KAT
K562NAB2ENSG00000166886.1221.8113.7517.78ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NAB2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NAB2 RNA is bound by 14 proteins.  







eCLIP assay for NAB2 is not avaliable on ENCORE database.





14 proteins are bound to NAB2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125748670157486748+3'-UTR,CDS4.422564.59919HepG2AQR
chr125748833057488427+3'-UTR,CDS,intron-Proximal4.070135.30739HepG2BUD13
chr125748670357486745+3'-UTR,CDS3.912703.20743HepG2PPIG
chr125748906857489220+3'-UTR3.753556.89197K562PUM2
chr125748287957482951+5'-UTR4.827636.02367K562GTF2F1
chr125748288457482981+5'-UTR3.609073.92899HepG2PRPF4
chr125748548857485625+CDS4.277484.54659HepG2G3BP1
chr125748534657485401+CDS4.017803.18939HepG2RBFOX2
chr125748633257486408+CDS,intron-Distal,intron-Proximal5.2629215.13298HepG2PRPF8
chr125748507657485122+CDS3.806633.05875K562RBM15
chr125748552857485613+CDS5.580366.68817HepG2EFTUD2
chr125748546857485557+CDS3.323284.63569HepG2RBFOX2
chr125748550857485604+CDS4.678164.40185HepG2GRSF1
chr125748487757484941+CDS,intron-Distal,intron-Proximal5.1920819.91334K562AQR
chr125748485157484936+CDS,intron-Distal,intron-Proximal4.305486.49379HepG2AQR
chr125748541657485508+CDS3.955383.76270HepG2GRSF1
chr125748616757486200+intron-Distal,intron-Proximal3.686004.59518HepG2SF3B4
chr125748319857483322+intron-Distal,intron-Proximal5.1673612.60993K562AQR
chr125748322657483309+intron-Distal,intron-Proximal3.893933.25631HepG2PRPF4
chr125748320057483319+intron-Distal,intron-Proximal4.852344.95161K562GTF2F1
chr125748320957483283+intron-Distal,intron-Proximal5.046525.58015HepG2AQR
chr125748620057486228+intron-Distal,intron-Proximal4.708546.12902HepG2SF3B4
chr125748805557488114+intron-Distal4.018403.05512HepG2PRPF4
chr125748580857485854+intron-Proximal4.770934.75882HepG2RBM22
chr125748662157486678+intron-Proximal4.746516.12902HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NAB2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NAB2 is not available on ENCORE database.

  • 98 RBPs can affect the levels of NAB2.  








The Knockdown/knockout RNA-Seq assay for NAB2 is not available on ENCORE database.





98 RBPs can affect the gene expression of NAB2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NAB2ENSG00000166886.8536.14560373.483700.521504.006803.30000HepG2ACO1
NAB2ENSG00000166886.8842.96450529.226100.671509.971208.80270HepG2AUH
NAB2ENSG00000166886.8311.79680154.629201.011705.648204.83000HepG2BOP1
NAB2ENSG00000166886.8624.79490422.995200.562603.892702.98490HepG2CIRBP
NAB2ENSG00000166886.8231.83340373.34250-0.687406.307805.37750HepG2CKAP4
NAB2ENSG00000166886.8850.81710238.547901.8345021.5121019.42490HepG2CNOT7
NAB2ENSG00000166886.8453.87370305.422100.571403.463502.22950HepG2CPSF7
NAB2ENSG00000166886.8675.78720431.796400.646108.197807.20200HepG2CELF1
NAB2ENSG00000166886.8399.28560269.850600.565203.503802.04830HepG2DDX47
NAB2ENSG00000166886.8992.66230442.936501.1641014.3375013.07310HepG2DDX6
NAB2ENSG00000166886.8242.45460357.30710-0.559503.848903.07500HepG2DKC1
NAB2ENSG00000166886.8424.78450279.284900.604905.007804.08670HepG2DNAJC21
NAB2ENSG00000166886.8182.03490304.46230-0.742004.113403.01340HepG2EEF2
NAB2ENSG00000166886.8174.39270253.77650-0.541202.434701.39670HepG2EFTUD2
NAB2ENSG00000166886.8309.53850425.60690-0.459402.115001.58920HepG2EIF2S1
NAB2ENSG00000166886.8577.78430438.759700.397002.530301.74950HepG2EIF4G2
NAB2ENSG00000166886.8216.28820321.34320-0.571203.336202.14290HepG2ESF1
NAB2ENSG00000166886.8793.37790607.642600.384703.625902.95200HepG2ETF1
NAB2ENSG00000166886.8125.62000220.92080-0.814504.855103.26830HepG2FAM120A
NAB2ENSG00000166886.8163.63170289.39520-0.822602.471601.41430HepG2FUS
NAB2ENSG00000166886.8412.73970268.611500.619603.367502.23780HepG2GNB2L1
NAB2ENSG00000166886.8313.86350201.906000.636402.979001.55660HepG2HNRNPA0
NAB2ENSG00000166886.8169.63560281.96020-0.733103.195802.50790HepG2HNRNPA1
NAB2ENSG00000166886.885.29160153.53880-0.848103.196802.52630HepG2HNRNPLL
NAB2ENSG00000166886.8232.75800311.54630-0.420602.364801.80130HepG2HNRNPU
NAB2ENSG00000166886.8147.93360420.13170-1.505905.083503.76780HepG2IGF2BP3
NAB2ENSG00000166886.8173.15820263.99560-0.608403.253501.40290HepG2LSM11
NAB2ENSG00000166886.8435.14950303.074200.521702.912802.08440HepG2MSI2
NAB2ENSG00000166886.8482.99080271.404600.831505.443703.45230HepG2NKRF
NAB2ENSG00000166886.8496.60610218.092501.187103.580702.56090HepG2PABPC1
NAB2ENSG00000166886.8642.41540435.078800.562103.858703.01690HepG2PABPC4
NAB2ENSG00000166886.8360.30120213.966600.751703.722501.95330HepG2PNPT1
NAB2ENSG00000166886.8198.40770289.01630-0.542703.252902.42050HepG2PRPF4
NAB2ENSG00000166886.8102.39410223.57240-1.126606.708105.51180HepG2PRPF8
NAB2ENSG00000166886.8226.06430439.43220-0.958908.768607.78680HepG2PUF60
NAB2ENSG00000166886.8795.33130466.501200.7696014.7015013.56140HepG2PUM1
NAB2ENSG00000166886.8219.51340380.40860-0.793207.682506.74060HepG2PUS1
NAB2ENSG00000166886.8434.31410321.131100.435502.626301.78860HepG2RBM15
NAB2ENSG00000166886.8376.70090507.87260-0.431002.973402.44170HepG2RBM22
NAB2ENSG00000166886.8339.17940521.56020-0.620805.631604.90280HepG2NELFE
NAB2ENSG00000166886.8349.82820485.77480-0.473603.569702.88190HepG2RECQL
NAB2ENSG00000166886.8468.87860270.096300.795604.197202.99950HepG2SMNDC1
NAB2ENSG00000166886.8815.82480573.615900.508106.184505.51740HepG2SRFBP1
NAB2ENSG00000166886.8252.94110509.28340-1.0097012.8043011.94790HepG2SRSF1
NAB2ENSG00000166886.8580.57770433.904600.420003.812503.09890HepG2SRSF5
NAB2ENSG00000166886.8399.70900307.233100.379502.220201.58990HepG2SRSF7
NAB2ENSG00000166886.8628.25020414.334300.600407.198806.38310HepG2SRSF9
NAB2ENSG00000166886.8365.72340498.02140-0.445503.728003.15240HepG2SSB
NAB2ENSG00000166886.8376.83580250.108600.591302.934201.66520HepG2STAU1
NAB2ENSG00000166886.8200.13090288.60930-0.528202.341101.71240HepG2SUPV3L1
NAB2ENSG00000166886.8249.46850457.78030-0.875809.060708.14120HepG2TAF15
NAB2ENSG00000166886.8145.09090302.76160-1.061209.164908.34760HepG2TIAL1
NAB2ENSG00000166886.8441.95410305.429200.533004.619703.92810HepG2TRIM56
NAB2ENSG00000166886.8245.06230170.470900.523502.053701.39950HepG2UCHL5
NAB2ENSG00000166886.8374.51410290.301400.367402.182901.63750HepG2UTP3
NAB2ENSG00000166886.8210.58160285.21430-0.437702.350901.72500HepG2ZC3H8
NAB2ENSG00000166886.8363.68420265.356700.454702.296601.70030K562AKAP8L
NAB2ENSG00000166886.8184.14280271.26480-0.558902.457801.63900K562BOP1
NAB2ENSG00000166886.8471.96430304.782100.630805.058703.42010K562CCDC124
NAB2ENSG00000166886.8256.44130410.58090-0.679005.354103.23620K562CEBPZ
NAB2ENSG00000166886.8409.08560254.654100.683804.953803.24580K562CIRBP
NAB2ENSG00000166886.8164.94880317.03020-0.942604.392401.98620K562CPSF7
NAB2ENSG00000166886.8688.892801008.98960-0.550605.574104.18800K562CELF1
NAB2ENSG00000166886.8321.59780471.89340-0.553204.405402.85460K562DDX21
NAB2ENSG00000166886.8358.26390220.624100.699304.073502.77670K562DDX3X
NAB2ENSG00000166886.8212.59730331.98990-0.643003.825302.21450K562DHX30
NAB2ENSG00000166886.8349.93610175.076900.999007.242205.96530K562EIF3G
NAB2ENSG00000166886.8548.51690820.72960-0.581406.610205.18050K562EIF4G2
NAB2ENSG00000166886.8298.51040201.182100.569203.405601.94170K562EWSR1
NAB2ENSG00000166886.8275.14090538.35310-0.9684011.377908.86510K562EXOSC5
NAB2ENSG00000166886.8568.41410385.928600.558502.920302.04840K562FIP1L1
NAB2ENSG00000166886.8155.98430248.74320-0.673303.075202.10580K562FTO
NAB2ENSG00000166886.8395.87080239.692700.723704.212603.48900K562FXR1
NAB2ENSG00000166886.854.92130127.57340-1.215902.196101.57710K562G3BP2
NAB2ENSG00000166886.8363.83730487.63650-0.422502.923901.75170K562GLRX3
NAB2ENSG00000166886.8433.90640237.683300.868206.131504.34260K562IGF2BP2
NAB2ENSG00000166886.8200.97680309.82940-0.624403.441301.77160K562ILF3
NAB2ENSG00000166886.8188.63500299.46680-0.666803.834802.08640K562KHDRBS1
NAB2ENSG00000166886.8122.63070235.14120-0.939203.017702.03770K562KRR1
NAB2ENSG00000166886.8446.08440249.194800.839908.086106.40410K562MATR3
NAB2ENSG00000166886.8287.98650512.69290-0.832109.972108.53970K562MTPAP
NAB2ENSG00000166886.8369.62060230.170400.683204.523102.93990K562NCBP2
NAB2ENSG00000166886.8304.28070569.61020-0.9046013.4488011.97630K562NSUN2
NAB2ENSG00000166886.8308.13070222.168500.471802.323201.43110K562PCBP2
NAB2ENSG00000166886.8189.95560684.78300-1.8500029.8670027.36920K562PCBP3
NAB2ENSG00000166886.8173.21300525.25270-1.6005025.7129023.49000K562POLR2G
NAB2ENSG00000166886.8673.65920438.186600.620404.097203.07300K562PPIG
NAB2ENSG00000166886.8569.74210242.618801.231506.169505.21030K562PTBP1
NAB2ENSG00000166886.8462.86110895.49870-0.9521010.553008.94750K562PUF60
NAB2ENSG00000166886.8578.11340232.597701.3134018.7400016.33400K562RBM22
NAB2ENSG00000166886.8342.60980226.772600.595203.487001.86760K562RBM34
NAB2ENSG00000166886.8412.96680216.682200.930304.388603.13840K562RCC2
NAB2ENSG00000166886.8330.65480468.01050-0.501203.259602.08410K562SAFB
NAB2ENSG00000166886.8342.59010483.86960-0.498103.213701.64650K562SDAD1
NAB2ENSG00000166886.8483.36060273.207200.823004.182802.22300K562SERBP1
NAB2ENSG00000166886.8284.16160132.435301.101305.032103.86150K562SF3B4
NAB2ENSG00000166886.8202.03450326.67450-0.693304.422302.78490K562SLBP
NAB2ENSG00000166886.8385.53130237.856500.696705.030904.08080K562SRSF1
NAB2ENSG00000166886.8278.72810421.08540-0.595304.783503.22680K562SRSF7
NAB2ENSG00000166886.8429.01530597.86540-0.478804.029702.18860K562SRSF9
NAB2ENSG00000166886.8198.63890309.07050-0.637803.354102.22510K562SUPV3L1
NAB2ENSG00000166886.8327.06900526.84110-0.687806.603205.32570K562SYNCRIP
NAB2ENSG00000166886.8556.40750240.706501.2088014.9168013.01530K562TARDBP
NAB2ENSG00000166886.8365.01720232.193800.652504.616003.51800K562TIA1
NAB2ENSG00000166886.8314.17730227.898100.463102.320101.33850K562TRA2A
NAB2ENSG00000166886.8264.06210123.414201.097304.292602.86730K562U2AF1
NAB2ENSG00000166886.8260.57840127.540501.030707.845906.48270K562U2AF2
NAB2ENSG00000166886.8284.39010516.79560-0.861709.029807.41170K562WDR3
NAB2ENSG00000166886.8314.22020537.44090-0.774309.997508.50440K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NAB2 is not available on ENCORE database.





4 RBPs can affect the splicing of NAB2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENAB2ENSG00000166886.8chr12+574871895748738157486845574869785748839457489259-0.285000.000280.02296excludedHepG2RBM22
SENAB2ENSG00000166886.8chr12+574871895748738157486845574869785748839457489259-0.274000.006070.08814excludedHepG2U2AF1
SENAB2ENSG00000166886.8chr12+574871895748738157486845574869785748839457489259-0.239000.001460.08336excludedK562HNRNPL
SENAB2ENSG00000166886.8chr12+574871895748738157486845574869785748839457489259-0.416000.000040.00500excludedHepG2SRSF9

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NAB2 is not avaliable on ENCORE database.