NAA40

General Information

Gene Name       : NAA40
Gene ID             : ENSG00000110583.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NAA40)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NAA40ENSG00000110583.1220.0421.5120.77ENCSR000AEF
HepG2NAA40ENSG00000110583.1225.7119.7522.73ENCSR985KAT
K562NAA40ENSG00000110583.1227.9426.2127.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NAA40 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NAA40 RNA is bound by 15 proteins.  







eCLIP assay for NAA40 is not avaliable on ENCORE database.





15 proteins are bound to NAA40 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116371439363714472+3'-UTR,CDS,intron-Distal,intron-Proximal5.736878.16831K562GPKOW
chr116371441163714467+3'-UTR,CDS,intron-Distal,intron-Proximal4.142426.08299HepG2PPIG
chr116371971863719775+3'-UTR,CDS,intron-Distal3.822954.13746HepG2PPIG
chr116371428463714336+3'-UTR,CDS,intron-Distal,intron-Proximal4.233474.29106HepG2PRPF8
chr116372344363723505+3'-UTR3.392944.61367K562UPF1
chr116372151263721612+3'-UTR,CDS,intron-Proximal3.835328.70001HepG2PRPF8
chr116372003063720089+3'-UTR,CDS,intron-Distal,intron-Proximal5.050935.13952K562SF3B4
chr116371440063714460+3'-UTR,CDS,intron-Distal,intron-Proximal4.089154.13361HepG2U2AF1
chr116372201563722102+3'-UTR3.171203.05408HepG2UPF1
chr116371433663714469+3'-UTR,CDS,intron-Distal,intron-Proximal3.781908.47339HepG2PRPF8
chr116371436863714490+3'-UTR,CDS,intron-Distal,intron-Proximal3.366175.62330K562PRPF8
chr116371972463719802+3'-UTR,CDS,intron-Distal3.285014.41784HepG2GRWD1
chr116372413763724163+3'-UTR4.413854.22051K562UPF1
chr116372003263720098+3'-UTR,CDS,intron-Distal,intron-Proximal3.308213.57857HepG2SF3B4
chr116371441563714459+3'-UTR,CDS,intron-Distal,intron-Proximal4.120823.36385K562UCHL5
chr116372151063721638+3'-UTR,CDS,intron-Distal,intron-Proximal3.297495.54603K562PRPF8
chr116371440563714461+3'-UTR,CDS,intron-Distal,intron-Proximal4.5307117.58272HepG2U2AF2
chr116372234963722449+3'-UTR3.727764.87412HepG2EIF3H
chr116372291163722964+3'-UTR3.876855.81489K562UPF1
chr116371440863714460+3'-UTR,CDS,intron-Distal,intron-Proximal4.041003.06676K562U2AF2
chr116371987763719920+3'-UTR,CDS,intron-Distal,intron-Proximal3.791043.31827HepG2GRWD1
chr116372234763722392+3'-UTR3.545373.37083K562UPF1
chr116371437463714465+3'-UTR,CDS,intron-Distal,intron-Proximal5.2433614.19592K562AQR
chr116371439163714467+3'-UTR,CDS,intron-Distal,intron-Proximal3.9629813.85622K562BUD13
chr116371992063720054+3'-UTR,CDS,intron-Distal,intron-Proximal3.745776.39499HepG2GRWD1
chr116371434463714421+3'-UTR,intron-Distal,intron-Proximal4.375265.28859HepG2SF3B4
chr116371987763719935+3'-UTR,CDS,intron-Distal,intron-Proximal3.176096.27819HepG2PPIG
chr116372000163720105+3'-UTR,CDS,intron-Distal,intron-Proximal3.242258.55730HepG2PRPF8
chr116371973963719792+3'-UTR,CDS,intron-Distal3.594933.01533HepG2SRSF1
chr116371431863714464+3'-UTR,CDS,intron-Distal,intron-Proximal3.922563.96535HepG2AQR
chr116371330463713363+5'-UTR,CDS,intron-Proximal3.377526.37739K562BUD13
chr116370648363706575+5'-UTR,CDS,intron-Proximal4.559117.22925K562DDX3X
chr116371335163713427+5'-UTR,CDS,intron-Proximal3.514008.10600HepG2PPIG
chr116371331063713373+5'-UTR,CDS,intron-Proximal3.539305.65349K562UCHL5
chr116371330463713351+5'-UTR,CDS,intron-Proximal3.714035.58370HepG2PPIG
chr116371333263713414+5'-UTR,CDS,intron-Proximal3.877087.50845HepG2GRWD1
chr116370650163706575+5'-UTR,CDS,intron-Proximal4.198833.31827HepG2GRWD1
chr116370647063706575+5'-UTR,CDS,intron-Proximal3.088454.95054HepG2NCBP2
chr116371338463713433+CDS,intron-Proximal4.381554.78571K562UCHL5
chr116371339263713464+CDS,intron-Proximal4.400195.34978HepG2PRPF8
chr116371339663713450+CDS,intron-Proximal3.636863.93631K562AQR
chr116371345063713522+intron-Distal,intron-Proximal4.123635.63763K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NAA40 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NAA40 is not available on ENCORE database.

  • 81 RBPs can affect the levels of NAA40.  








The Knockdown/knockout RNA-Seq assay for NAA40 is not available on ENCORE database.





81 RBPs can affect the gene expression of NAA40 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NAA40ENSG00000110583.8928.94800620.365100.582404.075103.44720HepG2AKAP1
NAA40ENSG00000110583.8625.66850805.47940-0.364403.929903.16390HepG2CKAP4
NAA40ENSG00000110583.8752.05800435.550700.787904.953303.92470HepG2CNOT7
NAA40ENSG00000110583.8341.05150560.34040-0.716305.668904.71730HepG2CPSF6
NAA40ENSG00000110583.8797.019601031.51780-0.372103.672502.95270HepG2CELF1
NAA40ENSG00000110583.8931.859301109.00600-0.251102.406601.70850HepG2DAZAP1
NAA40ENSG00000110583.8905.87540745.101300.281802.811101.97100HepG2DDX19B
NAA40ENSG00000110583.8467.52340662.89140-0.503703.669702.51170HepG2DDX5
NAA40ENSG00000110583.8526.04470677.50050-0.365002.923102.20350HepG2DNAJC21
NAA40ENSG00000110583.8889.94670542.290500.714606.177505.22660HepG2EIF4A3
NAA40ENSG00000110583.8695.631001048.16660-0.591505.583504.44890HepG2EIF4G2
NAA40ENSG00000110583.8269.89370415.13970-0.621204.164003.20780HepG2FUBP3
NAA40ENSG00000110583.81047.30610547.205800.9364011.3760010.07000HepG2FXR1
NAA40ENSG00000110583.81013.67770760.815500.413903.225202.48350HepG2HNRNPC
NAA40ENSG00000110583.8878.408201077.16580-0.294302.656001.95220HepG2HNRNPF
NAA40ENSG00000110583.8425.54530606.19210-0.510503.286902.60720HepG2HNRNPLL
NAA40ENSG00000110583.8873.919601060.70960-0.279501.979801.35960HepG2IGF2BP1
NAA40ENSG00000110583.8782.16320484.227600.691702.390501.48420HepG2IGF2BP3
NAA40ENSG00000110583.8972.57420660.701600.557703.396802.00920HepG2KRR1
NAA40ENSG00000110583.81158.51880891.317600.378202.049301.34350HepG2LARP4
NAA40ENSG00000110583.8954.38740547.397100.801908.202907.08510HepG2MAGOH
NAA40ENSG00000110583.8880.08400550.451500.676905.423804.56540HepG2MATR3
NAA40ENSG00000110583.81028.79920563.410100.868609.389308.26320HepG2NCBP2
NAA40ENSG00000110583.8374.68470537.48920-0.520603.242602.43420HepG2NSUN2
NAA40ENSG00000110583.8207.33630398.03310-0.940905.166003.92390HepG2PABPC1
NAA40ENSG00000110583.8801.67590545.009400.556605.949905.11340HepG2PCBP1
NAA40ENSG00000110583.8467.05400674.09980-0.529405.472604.46700HepG2PPIL4
NAA40ENSG00000110583.8622.49490794.29060-0.351603.273002.43820HepG2PRPF4
NAA40ENSG00000110583.8999.11620554.551300.8492015.8047014.70190HepG2PTBP1
NAA40ENSG00000110583.8813.18560600.627200.437003.804203.08810HepG2QKI
NAA40ENSG00000110583.8500.74380704.56230-0.492702.010401.39990HepG2RAVER1
NAA40ENSG00000110583.8700.77970545.094800.362402.397701.76540HepG2RBM25
NAA40ENSG00000110583.8656.05600833.04720-0.344602.236301.35370HepG2RBM27
NAA40ENSG00000110583.81060.81640617.175800.7813013.4723012.44420HepG2NELFE
NAA40ENSG00000110583.8853.78630574.791100.570707.152506.23030HepG2RECQL
NAA40ENSG00000110583.8835.528201160.23960-0.473704.110703.30450HepG2RPLP0
NAA40ENSG00000110583.8641.47320437.173900.553103.112902.26620HepG2RPS3A
NAA40ENSG00000110583.8508.51430673.05920-0.404403.957903.21080HepG2SAFB2
NAA40ENSG00000110583.8395.77070600.02320-0.600404.473903.59350HepG2SF3B1
NAA40ENSG00000110583.8810.56980577.388500.489305.262904.49230HepG2SF3B4
NAA40ENSG00000110583.8740.745101006.67150-0.442505.789304.83640HepG2SLBP
NAA40ENSG00000110583.81078.644201327.92880-0.300003.449302.90890HepG2SRFBP1
NAA40ENSG00000110583.8734.59520602.656700.285502.038201.61510HepG2SRSF1
NAA40ENSG00000110583.8423.73600645.59080-0.607503.562202.41370HepG2SRSF3
NAA40ENSG00000110583.8790.752101058.24930-0.420404.963304.07300HepG2SRSF7
NAA40ENSG00000110583.8961.417101152.95550-0.262102.543302.04620HepG2SSB
NAA40ENSG00000110583.81350.307201178.817700.195801.825401.30100HepG2SUCLG1
NAA40ENSG00000110583.8503.00170726.46460-0.530303.565702.81270HepG2SUPV3L1
NAA40ENSG00000110583.8323.40900486.90820-0.590303.973602.80550HepG2TFIP11
NAA40ENSG00000110583.8586.52150734.37990-0.324302.335901.86870HepG2TIAL1
NAA40ENSG00000110583.8518.92850740.95200-0.513806.108505.32790HepG2TRIM56
NAA40ENSG00000110583.8387.00710780.43790-1.0119011.9438010.61160HepG2U2AF1
NAA40ENSG00000110583.8320.35510672.01330-1.068803.298902.21860HepG2U2AF2
NAA40ENSG00000110583.8489.70930783.84020-0.6786010.512109.34340HepG2ZC3H8
NAA40ENSG00000110583.81007.37470796.702100.338404.151203.51860HepG2ZNF622
NAA40ENSG00000110583.81250.959401816.90590-0.538405.909304.12120K562ABCF1
NAA40ENSG00000110583.8741.716001582.21740-1.0930019.3588017.97370K562AQR
NAA40ENSG00000110583.8568.64510801.12130-0.494503.662202.65760K562BOP1
NAA40ENSG00000110583.8598.30820851.75280-0.509504.420403.43040K562CPSF6
NAA40ENSG00000110583.8758.17080944.56950-0.317103.147501.72500K562DDX27
NAA40ENSG00000110583.8746.384801017.42500-0.446902.770301.49130K562EEF2
NAA40ENSG00000110583.8629.23070982.92930-0.643506.635105.17340K562EFTUD2
NAA40ENSG00000110583.81235.984901469.08120-0.249302.335101.66560K562EIF2S2
NAA40ENSG00000110583.8955.81670626.143400.610108.406807.02520K562EIF3G
NAA40ENSG00000110583.8981.104701306.08880-0.412803.621902.64160K562FIP1L1
NAA40ENSG00000110583.8537.44520734.72540-0.451102.585601.70500K562FTO
NAA40ENSG00000110583.81015.74050695.168500.547007.049506.14480K562FXR1
NAA40ENSG00000110583.8336.51830557.56370-0.728504.851603.85430K562G3BP2
NAA40ENSG00000110583.8586.71670813.15910-0.470903.707702.79440K562GPKOW
NAA40ENSG00000110583.81322.805701957.72290-0.565607.282206.04320K562GRSF1
NAA40ENSG00000110583.8480.23240752.31580-0.647605.490103.68930K562HNRNPK
NAA40ENSG00000110583.81299.898801770.75270-0.446004.253303.27190K562HSPD1
NAA40ENSG00000110583.8424.76360694.48120-0.709304.862403.58320K562KRR1
NAA40ENSG00000110583.81072.20000790.058200.440404.325103.14820K562MATR3
NAA40ENSG00000110583.8528.20280956.50780-0.8567010.190508.74650K562PRPF8
NAA40ENSG00000110583.81194.35070769.194200.634708.685807.55100K562PTBP1
NAA40ENSG00000110583.81422.504801856.50230-0.384203.888601.97620K562RBM17
NAA40ENSG00000110583.8755.96040974.18470-0.365902.173301.45330K562RPS19
NAA40ENSG00000110583.8487.19970773.54430-0.667004.734003.43640K562SF3B1
NAA40ENSG00000110583.8418.75440574.94140-0.457302.941401.31060K562SND1
NAA40ENSG00000110583.8429.79520718.98460-0.742302.885501.62070K562SNRNP200
NAA40ENSG00000110583.8411.47370754.08830-0.8739011.190209.78110K562SRSF1
NAA40ENSG00000110583.8796.095001072.03140-0.429304.237602.33180K562SRSF9
NAA40ENSG00000110583.81314.659301713.64350-0.382403.190801.71340K562SSRP1
NAA40ENSG00000110583.81173.336101567.33080-0.417703.218901.84820K562STAU1
NAA40ENSG00000110583.8624.45410925.88080-0.568204.552503.22230K562SUPV3L1
NAA40ENSG00000110583.81179.206501527.75430-0.373602.964401.52050K562TRIP6
NAA40ENSG00000110583.8316.26070540.53150-0.773305.917504.18340K562U2AF1
NAA40ENSG00000110583.8306.15670558.22810-0.8666010.179708.63930K562U2AF2
NAA40ENSG00000110583.8720.07310980.04360-0.444703.463202.31700K562UCHL5
NAA40ENSG00000110583.81570.220001314.007900.256902.111701.47720K562UPF1
NAA40ENSG00000110583.81344.624201782.55650-0.406704.103303.01800K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NAA40 is not available on ENCORE database.





13 RBPs can affect the splicing of NAA40 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENAA40ENSG00000110583.8chr11+637144226371447563713311637134076371970963719805-0.249000.006350.08880excludedK562SF3B4
SENAA40ENSG00000110583.8chr11+637144226371447563713311637134076371970963719805-0.202000.008530.09311excludedK562PUS1
A3SSNAA40ENSG00000110583.8chr11+6372142063721521637214436372152163720227637203110.098000.000180.00145longerK562AQR
A5SSNAA40ENSG00000110583.8chr11+6371331163714475637133116371340763719709637198050.355000.000840.08784longerHepG2NCBP2
RINAA40ENSG00000110583.8chr11+6371331163714475637133116371340763714422637144750.293000.000330.03415includedK562PHF6
RINAA40ENSG00000110583.8chr11+6371331163714475637133116371340763714422637144750.306000.003110.05464includedHepG2IGF2BP3
RINAA40ENSG00000110583.8chr11+6371331163714475637133116371340763714422637144750.583000.000090.00324includedHepG2G3BP1
RINAA40ENSG00000110583.8chr11+6371331163714475637133116371340763714422637144750.305000.000580.01630includedHepG2KHSRP
RINAA40ENSG00000110583.8chr11+6371331163714475637133116371340763714422637144750.244000.001470.01694includedHepG2RBM22
RINAA40ENSG00000110583.8chr11+637133116371447563713311637134076371442263714475-0.263000.000360.00606excludedK562UTP18
RINAA40ENSG00000110583.8chr11+6371970963719947637197096371980563719878637199470.068000.000230.00176includedK562AQR
RINAA40ENSG00000110583.8chr11+6371331163714475637133116371340763714422637144750.255000.000910.00620includedK562AQR
RINAA40ENSG00000110583.8chr11+637133116371447563713311637134076371419663714475-0.304000.007270.09425excludedK562PTBP1
RINAA40ENSG00000110583.8chr11+637133116371447563713311637134076371442263714475-0.248000.000330.00756excludedK562FXR1
MXENAA40ENSG00000110583.8chr11+63714196637144756372022763720311637133116371340763721443637215210.180000.001530.026241includedK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NAA40 is not avaliable on ENCORE database.