ITM2A

General Information

Gene Name       : ITM2A
Gene ID             : ENSG00000078596.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ITM2A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ITM2AENSG00000078596.1020.6325.9723.30ENCSR000AEF
HepG2ITM2AENSG00000078596.100.000.000.00ENCSR985KAT
K562ITM2AENSG00000078596.1044.7842.6143.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ITM2A is not avaliable on ENCORE database.



Proteins bound to RNA
  • ITM2A RNA is bound by 2 proteins.  







eCLIP assay for ITM2A is not avaliable on ENCORE database.





2 proteins are bound to ITM2A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX7861630078616359-3'-UTR,intron-Distal5.2796612.61077K562PABPC4
chrX7861807778618136-CDS,intron-Distal,intron-Proximal3.633486.49527K562SND1
chrX7861843878618519-CDS,intron-Distal,intron-Proximal4.183687.36912K562SND1
chrX7861665478616675-CDS,intron-Distal3.077184.31260K562SND1
chrX7861682578616874-CDS,intron-Distal,intron-Proximal3.235576.91892K562SND1
chrX7861813678618185-CDS,intron-Distal4.990177.09854K562SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ITM2A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ITM2A is not available on ENCORE database.

  • 68 RBPs can affect the levels of ITM2A.  








The Knockdown/knockout RNA-Seq assay for ITM2A is not available on ENCORE database.





68 RBPs can affect the gene expression of ITM2A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ITM2AENSG00000078596.6908.053201366.32630-0.589506.303504.46800K562ABCF1
ITM2AENSG00000078596.61800.143501401.816900.360703.124702.42960K562AKAP8L
ITM2AENSG00000078596.62185.393901746.956600.322903.256201.90890K562APOBEC3C
ITM2AENSG00000078596.6780.599302072.37620-1.4086017.7920016.47110K562AQR
ITM2AENSG00000078596.6711.23900873.03640-0.295702.538701.62230K562BCLAF1
ITM2AENSG00000078596.6699.13150951.73590-0.445003.045301.54180K562BUD13
ITM2AENSG00000078596.61578.096901186.021900.412003.765002.25840K562CIRBP
ITM2AENSG00000078596.6678.99260979.74720-0.529002.836901.38360K562CKAP4
ITM2AENSG00000078596.6975.920101335.48930-0.452506.319404.61020K562CPEB4
ITM2AENSG00000078596.6526.60560662.32820-0.330802.277901.33800K562CSTF2
ITM2AENSG00000078596.61733.324002434.32770-0.490007.402005.83090K562CELF1
ITM2AENSG00000078596.61003.771701382.05060-0.461406.717505.76670K562DDX47
ITM2AENSG00000078596.61301.61500767.274000.762407.229005.18930K562EEF2
ITM2AENSG00000078596.6619.90530763.43420-0.300502.443001.32010K562EIF2S1
ITM2AENSG00000078596.6878.826401192.85900-0.440805.500404.53750K562EIF2S2
ITM2AENSG00000078596.61085.58230793.767400.451603.063401.97380K562EIF3D
ITM2AENSG00000078596.6448.35890726.13570-0.695607.142505.83060K562EIF4A3
ITM2AENSG00000078596.61113.754301979.81880-0.8299021.0531018.62440K562EIF4G2
ITM2AENSG00000078596.6700.730201044.38460-0.575703.708901.77690K562ESF1
ITM2AENSG00000078596.61538.18340982.202300.647008.220506.67440K562FIP1L1
ITM2AENSG00000078596.6457.35450594.84100-0.379202.111901.36010K562FMR1
ITM2AENSG00000078596.6272.87880504.18920-0.885707.595106.00260K562FTO
ITM2AENSG00000078596.6914.59030755.150800.276302.235901.68150K562FXR1
ITM2AENSG00000078596.6507.70550838.06400-0.7231010.028907.97870K562GLRX3
ITM2AENSG00000078596.6363.65570558.14770-0.618104.085203.12520K562GPKOW
ITM2AENSG00000078596.61086.497601589.63570-0.549006.828105.63110K562GRSF1
ITM2AENSG00000078596.6597.088601078.18960-0.8526013.6390011.53960K562HNRNPA1
ITM2AENSG00000078596.6597.50650823.32860-0.462503.847203.15780K562HNRNPC
ITM2AENSG00000078596.6364.69320735.26980-1.0116013.4262010.91220K562HNRNPF
ITM2AENSG00000078596.6735.863101248.95770-0.7632011.405809.11780K562HNRNPL
ITM2AENSG00000078596.61214.41570807.897300.587905.138703.82500K562HNRNPM
ITM2AENSG00000078596.6307.93970476.60800-0.630203.484302.42210K562KRR1
ITM2AENSG00000078596.6371.92590544.81760-0.550804.241803.14270K562METAP2
ITM2AENSG00000078596.6520.96870881.13040-0.7582012.4918010.91880K562MTPAP
ITM2AENSG00000078596.6604.63840978.92880-0.6951010.561809.23260K562NSUN2
ITM2AENSG00000078596.61189.06090906.648000.391102.580601.77900K562PCBP3
ITM2AENSG00000078596.61213.993202034.32410-0.7448013.5867011.03920K562PNPT1
ITM2AENSG00000078596.6892.56050695.459200.359902.735501.93980K562POLR2G
ITM2AENSG00000078596.61246.89320721.413200.789309.760408.34490K562PRPF8
ITM2AENSG00000078596.6394.92680738.21050-0.9024010.145508.17590K562PSIP1
ITM2AENSG00000078596.61395.553501129.925000.304502.625301.97600K562PTBP1
ITM2AENSG00000078596.61675.969502160.13270-0.366103.479902.56780K562PUF60
ITM2AENSG00000078596.61532.062702251.23260-0.5552010.346008.46400K562PUM2
ITM2AENSG00000078596.62973.448901390.347101.0966023.7160022.13840K562PUS1
ITM2AENSG00000078596.62022.478201354.576600.5782010.035008.93190K562RBM15
ITM2AENSG00000078596.6656.599801083.48490-0.722608.987707.33550K562RBM22
ITM2AENSG00000078596.6877.36850673.570000.381303.045902.00100K562RCC2
ITM2AENSG00000078596.6456.20500734.84930-0.687805.063703.95510K562RPS19
ITM2AENSG00000078596.6574.08080369.677900.634904.143402.89170K562RPS3
ITM2AENSG00000078596.6466.56260931.12710-0.996907.375604.50110K562SAFB2
ITM2AENSG00000078596.6625.91220966.08110-0.626208.689807.30070K562SF3A3
ITM2AENSG00000078596.6330.56920530.84540-0.683304.581203.31140K562SF3B1
ITM2AENSG00000078596.6595.37850792.60350-0.412803.670702.68170K562SF3B4
ITM2AENSG00000078596.6626.94650989.78250-0.658809.967608.31040K562SRPK2
ITM2AENSG00000078596.6954.162601288.67940-0.433603.640002.06190K562SSRP1
ITM2AENSG00000078596.6641.983001178.64330-0.8765010.767408.25800K562STAU1
ITM2AENSG00000078596.61522.171901884.73780-0.308203.034201.45730K562SUCLG1
ITM2AENSG00000078596.6901.654201121.07300-0.314202.058101.44160K562TARDBP
ITM2AENSG00000078596.6882.508401081.39900-0.293202.268701.53470K562TIA1
ITM2AENSG00000078596.6577.65400754.36830-0.385102.601201.69000K562TRIM56
ITM2AENSG00000078596.6765.177101148.85660-0.586305.612203.50880K562TRIP6
ITM2AENSG00000078596.6727.709501037.98580-0.512407.269606.17090K562UPF1
ITM2AENSG00000078596.6725.331301144.44610-0.657908.823806.06880K562UPF2
ITM2AENSG00000078596.6456.860901023.48440-1.1637015.4259012.96710K562UTP3
ITM2AENSG00000078596.6588.29580888.16050-0.594306.175704.83610K562WDR3
ITM2AENSG00000078596.61172.783002454.83380-1.0657011.350008.94000K562WRN
ITM2AENSG00000078596.6554.42100752.76910-0.441202.953001.69140K562XRN2
ITM2AENSG00000078596.61333.308002334.87130-0.808307.625906.07320K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ITM2A is not available on ENCORE database.





8 RBPs can affect the splicing of ITM2A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEITM2AENSG00000078596.6chrX-786189197861905178618438786186367862260178622856-0.113000.000070.00238excludedK562SRSF1
SEITM2AENSG00000078596.6chrX-786189197861905178618438786186367862260178622856-0.179000.000010.00026excludedK562SF3B4
SEITM2AENSG00000078596.6chrX-786189197861905178618438786186367862260178622856-0.108000.003070.08527excludedK562PRPF8
SEITM2AENSG00000078596.6chrX-7861891978619051786184387861863678622601786228560.071000.001190.04306includedK562HNRNPU
SEITM2AENSG00000078596.6chrX-786189197861905178618438786186367862260178622856-0.075000.000520.01630excludedK562RBM15
SEITM2AENSG00000078596.6chrX-786189197861905178618438786186367862260178622856-0.087000.000970.04389excludedK562HNRNPK
A3SSITM2AENSG00000078596.6chrX-7861645878616701786164587861667478616825786170180.095000.000000.00000longerK562AQR
A5SSITM2AENSG00000078596.6chrX-7862294878623164786230437862316478622709786227700.183000.000470.04386longerK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ITM2A is not avaliable on ENCORE database.