HMG20A

General Information

Gene Name       : HMG20A
Gene ID             : ENSG00000140382.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HMG20A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HMG20AENSG00000140382.1453.2151.3252.27ENCSR000AEF
HepG2HMG20AENSG00000140382.1420.6428.7624.70ENCSR985KAT
K562HMG20AENSG00000140382.1439.6941.0440.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HMG20A is not avaliable on ENCORE database.



Proteins bound to RNA
  • HMG20A RNA is bound by 17 proteins.  







eCLIP assay for HMG20A is not avaliable on ENCORE database.





17 proteins are bound to HMG20A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157775952077759597+3'-UTR,CDS,intron-Proximal3.310053.28366HepG2BCLAF1
chr157777732377777391+3'-UTR3.607525.23915K562IGF2BP1
chr157777529077775365+3'-UTR,intron-Proximal4.291623.35169HepG2U2AF2
chr157775074577750842+3'-UTR,5'-UTR,CDS,intron-Proximal3.279216.67170K562ZNF622
chr157777708077777170+3'-UTR3.363647.00576K562PTBP1
chr157777673577776786+3'-UTR4.168737.49447K562UPF1
chr157777749177777543+3'-UTR3.513803.34573K562IGF2BP2
chr157777647777776495+3'-UTR3.434189.14812K562UPF1
chr157777725977777322+3'-UTR4.5837715.51277K562UPF1
chr157775947577759611+3'-UTR,CDS,intron-Proximal3.170816.02988K562UCHL5
chr157777723977777323+3'-UTR5.013567.33375K562IGF2BP1
chr157777614177776252+3'-UTR4.095204.13050K562LIN28B
chr157777164477771664+3'-UTR,CDS,intron-Proximal3.806603.02250K562YBX3
chr157777762777777702+3'-UTR4.9405817.08178K562PUM2
chr157777649577776525+3'-UTR3.7752110.38257K562UPF1
chr157777747877777615+3'-UTR3.7611911.58432K562IGF2BP1
chr157777780277777843+3'-UTR4.392315.20626K562PUM2
chr157771326377713348+5'-UTR,intron-Distal,intron-Proximal3.2797711.10825K562DDX3X
chr157777058577770677+CDS,intron-Proximal4.792564.86944K562AQR
chr157777073677770853+CDS,intron-Proximal3.820493.56019HepG2GRWD1
chr157777063077770798+CDS,intron-Proximal3.032834.49816K562UCHL5
chr157772858677728693+intron-Distal3.553594.51091HepG2HNRNPL
chr157777258877772629+intron-Distal4.446875.16762K562YBX3
chr157775933077759425+intron-Distal,intron-Proximal4.007033.24603K562KHSRP
chr157772854577728652+intron-Distal6.0277917.21285HepG2QKI
chr157772825977728407+intron-Distal3.527063.30286HepG2PTBP1
chr157776504677765151+intron-Distal3.872343.09122HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HMG20A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HMG20A is not available on ENCORE database.

  • 71 RBPs can affect the levels of HMG20A.  








The Knockdown/knockout RNA-Seq assay for HMG20A is not available on ENCORE database.





71 RBPs can affect the gene expression of HMG20A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HMG20AENSG00000140382.10765.582401051.15060-0.457303.684802.55310HepG2ADAR
HMG20AENSG00000140382.101336.949401638.53830-0.293503.640602.87250HepG2AUH
HMG20AENSG00000140382.10572.39460911.42340-0.671105.404404.08110HepG2BCCIP
HMG20AENSG00000140382.10726.403601077.92330-0.569407.833706.13890HepG2YBX3
HMG20AENSG00000140382.10709.18050921.34970-0.377603.054802.18160HepG2DDX19B
HMG20AENSG00000140382.10754.936201079.46190-0.515906.561904.87390HepG2DDX1
HMG20AENSG00000140382.101012.333701415.87280-0.484003.914703.18220HepG2DDX3X
HMG20AENSG00000140382.10911.018501164.88240-0.354602.531301.56050HepG2DDX5
HMG20AENSG00000140382.10706.799301020.89510-0.530505.242803.91990HepG2DHX30
HMG20AENSG00000140382.10626.361001058.48890-0.7569013.1571011.71410HepG2DNAJC21
HMG20AENSG00000140382.10815.018801049.07090-0.364204.906604.07780HepG2DNAJC2
HMG20AENSG00000140382.101485.231101881.25530-0.341004.904904.14490HepG2ETF1
HMG20AENSG00000140382.101027.445701303.73160-0.343602.268001.63920HepG2FXR1
HMG20AENSG00000140382.10662.223401209.38050-0.8689010.001408.77590HepG2G3BP1
HMG20AENSG00000140382.10874.115201365.67360-0.643706.017705.09940HepG2GPKOW
HMG20AENSG00000140382.10658.36920951.08300-0.530707.643106.11890HepG2HDGF
HMG20AENSG00000140382.10582.32200823.25770-0.499502.807801.42310HepG2HNRNPA0
HMG20AENSG00000140382.10615.399801068.62880-0.7962010.587509.44690HepG2HNRNPA1
HMG20AENSG00000140382.10931.477101213.41340-0.381505.760204.81810HepG2HNRNPL
HMG20AENSG00000140382.10730.042801303.28340-0.8361010.537109.40310HepG2HNRNPLL
HMG20AENSG00000140382.10543.308501180.77150-1.1199031.8274029.96750HepG2HNRNPU
HMG20AENSG00000140382.101045.954101206.12310-0.205602.062901.41890HepG2ILF2
HMG20AENSG00000140382.10919.260801236.48130-0.427702.455901.52230HepG2KHSRP
HMG20AENSG00000140382.10705.735401002.75940-0.506804.385302.84720HepG2LIN28B
HMG20AENSG00000140382.10720.260001311.47960-0.864609.537008.42510HepG2MATR3
HMG20AENSG00000140382.10981.652301342.36690-0.451503.354302.65890HepG2NCBP2
HMG20AENSG00000140382.10554.461601053.15800-0.9256018.5511016.76530HepG2PPIL4
HMG20AENSG00000140382.10906.550201260.83680-0.475904.921504.15420HepG2PUF60
HMG20AENSG00000140382.10924.454101337.44550-0.532807.011505.96260HepG2PUM2
HMG20AENSG00000140382.101085.568201304.27790-0.264802.706002.09560HepG2RECQL
HMG20AENSG00000140382.10763.820101051.54320-0.461206.663605.72820HepG2SAFB2
HMG20AENSG00000140382.10522.995001226.30050-1.2294043.3088041.33000HepG2SMN1
HMG20AENSG00000140382.101038.652701435.36300-0.466702.480701.74190HepG2SNRNP70
HMG20AENSG00000140382.102183.370701775.950400.297904.612004.01350HepG2SRFBP1
HMG20AENSG00000140382.101796.072601367.501100.393206.034805.40310HepG2SRSF1
HMG20AENSG00000140382.101045.209401244.85850-0.252202.554101.94820HepG2SRSF5
HMG20AENSG00000140382.10850.869001112.51450-0.386805.057004.35190HepG2SRSF9
HMG20AENSG00000140382.10911.664301270.17930-0.478504.333503.45270HepG2TARDBP
HMG20AENSG00000140382.10861.323101147.42890-0.413804.128503.54410HepG2TIAL1
HMG20AENSG00000140382.10841.805701157.59080-0.459606.732105.91990HepG2TRIM56
HMG20AENSG00000140382.101003.798301231.73760-0.295202.326001.53130HepG2TUFM
HMG20AENSG00000140382.101680.396801055.799300.670407.538806.50780HepG2U2AF1
HMG20AENSG00000140382.10247.85950526.95570-1.0882011.5833010.04880HepG2UCHL5
HMG20AENSG00000140382.101314.128901049.580500.324203.720503.04180HepG2UTP3
HMG20AENSG00000140382.10934.199601124.84940-0.267902.841202.16240HepG2ZC3H8
HMG20AENSG00000140382.10941.469101195.63310-0.344804.811604.14090HepG2ZNF622
HMG20AENSG00000140382.102227.176901809.651800.299404.179003.50670K562AGGF1
HMG20AENSG00000140382.102307.135801975.723700.223602.147801.34980K562ATP5C1
HMG20AENSG00000140382.101072.355801336.32490-0.317502.663001.38360K562BCCIP
HMG20AENSG00000140382.101635.405602247.82840-0.458902.266701.32400K562CNOT7
HMG20AENSG00000140382.101967.285902296.28800-0.223102.338001.32810K562CPEB4
HMG20AENSG00000140382.101259.761701672.12240-0.408504.506803.50690K562CPSF6
HMG20AENSG00000140382.101982.154402376.36820-0.261703.330302.62530K562DDX47
HMG20AENSG00000140382.101289.403301578.57670-0.291903.211802.44610K562EIF2S2
HMG20AENSG00000140382.10999.404001242.23550-0.313802.998702.16970K562EIF3G
HMG20AENSG00000140382.102283.511502871.25760-0.330404.264103.10600K562EIF4G2
HMG20AENSG00000140382.101065.964101701.45580-0.674608.595207.04750K562FMR1
HMG20AENSG00000140382.101092.675901404.53180-0.362204.280603.55150K562FXR1
HMG20AENSG00000140382.101752.259402103.47390-0.263602.244301.56020K562GRSF1
HMG20AENSG00000140382.101178.848801675.28460-0.507006.462404.86610K562HNRNPA1
HMG20AENSG00000140382.101756.710802147.51570-0.289802.554401.54250K562HNRNPL
HMG20AENSG00000140382.101118.966001855.25610-0.7295015.3774013.37540K562HNRNPU
HMG20AENSG00000140382.101387.100301806.92930-0.381503.179602.27550K562MAGOH
HMG20AENSG00000140382.101257.455401803.38480-0.520204.859203.59880K562MATR3
HMG20AENSG00000140382.101206.127701558.30300-0.369603.349902.38400K562METAP2
HMG20AENSG00000140382.101440.106501681.17610-0.223302.453601.69130K562MTPAP
HMG20AENSG00000140382.102047.594401569.153700.383802.318101.52760K562NAA15
HMG20AENSG00000140382.101187.356001781.14540-0.585105.824904.61350K562PCBP3
HMG20AENSG00000140382.10925.276401366.23630-0.562307.280705.99640K562POLR2G
HMG20AENSG00000140382.101349.157501755.48550-0.379802.874002.19900K562PTBP1
HMG20AENSG00000140382.102495.815103264.92670-0.387505.996904.56560K562PUM2
HMG20AENSG00000140382.102341.085401819.543300.363504.779104.01980K562RBM15
HMG20AENSG00000140382.101275.889101683.73630-0.400203.246402.32940K562RBM22
HMG20AENSG00000140382.10875.928301118.92590-0.353202.058701.35890K562RPS19
HMG20AENSG00000140382.101260.736501843.17200-0.547909.806408.34100K562SF3A3
HMG20AENSG00000140382.101341.309002103.39670-0.649104.738202.40290K562SMN1
HMG20AENSG00000140382.101121.132201386.77580-0.306802.418001.44380K562SRSF4
HMG20AENSG00000140382.101269.512301625.01210-0.356202.857401.78850K562SRSF5
HMG20AENSG00000140382.10996.774501281.37690-0.362404.028902.44060K562SSB
HMG20AENSG00000140382.101214.122101741.82710-0.520705.228704.23990K562TARDBP
HMG20AENSG00000140382.10670.228101125.65420-0.748008.502006.64190K562UCHL5
HMG20AENSG00000140382.101533.973401762.34340-0.200202.216701.45180K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HMG20A is not available on ENCORE database.





7 RBPs can affect the splicing of HMG20A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHMG20AENSG00000140382.10chr15+777400607774015377713015777133467775074577750838-0.125000.000340.00559excludedHepG2U2AF2
SEHMG20AENSG00000140382.10chr15+777698967776997277763988777641567777063677770852-0.052000.004830.04517excludedK562AQR
SEHMG20AENSG00000140382.10chr15+7774006077740153777130157771334677750745777508380.066000.000010.00089includedK562FXR1
SEHMG20AENSG00000140382.10chr15+7774006077740153777130157771334677750745777508380.155000.000000.00388includedHepG2LIN28B
SEHMG20AENSG00000140382.10chr15+7774006077740153777130157771334677750745777508380.288000.000000.00000includedHepG2HNRNPL
SEHMG20AENSG00000140382.10chr15+7774006077740153777130157771334677750745777508380.318000.000000.00000includedK562HNRNPL
SEHMG20AENSG00000140382.10chr15+777400607774015377713015777133467775074577750838-0.139000.000000.00008excludedHepG2RBFOX2
SEHMG20AENSG00000140382.10chr15+7774006077740153777130157771334677750745777508380.059000.000030.02270includedK562NCBP2
A3SSHMG20AENSG00000140382.10chr15+777565817775672977756595777567297775074577750838-0.069000.000170.00143shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HMG20A is not avaliable on ENCORE database.