GATA4

General Information

Gene Name       : GATA4
Gene ID             : ENSG00000136574.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GATA4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GATA4ENSG00000136574.170.000.000.00ENCSR000AEF
HepG2GATA4ENSG00000136574.1722.3418.1120.23ENCSR985KAT
K562GATA4ENSG00000136574.170.040.110.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GATA4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GATA4 RNA is bound by 10 proteins.  







eCLIP assay for GATA4 is not avaliable on ENCORE database.





10 proteins are bound to GATA4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr81156538911565441+3'-UTR,5'-UTR,intron-Distal4.9493026.77804HepG2DDX3X
chr81161690811617036+3'-UTR5.103747.98718HepG2UPF1
chr81161600111616081+3'-UTR3.679745.64093HepG2UPF1
chr81156544111565489+3'-UTR,5'-UTR,intron-Distal5.6426916.76015HepG2DDX3X
chr81161630411616371+3'-UTR3.143985.18546HepG2UPF1
chr81156536311565389+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.649008.97908HepG2DDX3X
chr81161738811617467+3'-UTR3.544833.22654HepG2PCBP2
chr81156175611561814+5'-UTR,intron-Distal,intron-Proximal4.6426910.54914HepG2DDX3X
chr81160659211606647+CDS,intron-Proximal5.348787.36776HepG2PRPF8
chr81156641211566488+CDS,intron-Distal,intron-Proximal3.588369.83690HepG2PRPF8
chr81156620411566268+CDS,intron-Distal5.3097611.88906HepG2XPO5
chr81156773311567864+intron-Distal4.381135.09344HepG2XPO5
chr81159719111597324+intron-Distal3.552384.61500HepG2HNRNPM
chr81158333511583467+intron-Distal4.954447.16788HepG2RBFOX2
chr81158776911587823+intron-Distal4.356883.27946HepG2HNRNPM
chr81157128911571404+intron-Distal3.247675.58948HepG2HNRNPM
chr81156685011566894+intron-Distal3.641543.60408HepG2XPO5
chr81156707611567135+intron-Distal4.061933.38470HepG2NKRF
chr81158800811588067+intron-Distal3.145154.73383HepG2HNRNPM
chr81156708311567136+intron-Distal3.917335.85439HepG2CSTF2T
chr81160782311607921+intron-Distal,intron-Proximal3.087884.40834HepG2QKI
chr81161507911615170+intron-Distal3.871793.40229HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GATA4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GATA4 is not available on ENCORE database.

  • 75 RBPs can affect the levels of GATA4.  








The Knockdown/knockout RNA-Seq assay for GATA4 is not available on ENCORE database.





75 RBPs can affect the gene expression of GATA4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GATA4ENSG00000136574.131564.927401184.587900.401602.930501.95940HepG2ABCF1
GATA4ENSG00000136574.13430.63000675.65400-0.649805.326004.53630HepG2ACO1
GATA4ENSG00000136574.13696.85130476.543700.548103.814702.66550HepG2ADAR
GATA4ENSG00000136574.13405.786601011.60620-1.3179017.2998016.08540HepG2AKAP1
GATA4ENSG00000136574.13650.28290836.99970-0.364202.164601.46590HepG2ASCC1
GATA4ENSG00000136574.131508.195901054.789600.515805.534904.72340HepG2BOP1
GATA4ENSG00000136574.13504.88190672.89150-0.414402.770401.99780HepG2CALR
GATA4ENSG00000136574.13283.13860440.34660-0.637102.926802.13920HepG2CNOT7
GATA4ENSG00000136574.13674.21300488.703400.464104.366103.08760HepG2YBX3
GATA4ENSG00000136574.13301.50710452.79540-0.586703.009901.57510HepG2CSTF2T
GATA4ENSG00000136574.13475.66510680.44180-0.516504.992104.17500HepG2CELF1
GATA4ENSG00000136574.13827.55170487.541700.763208.696907.56410HepG2DDX21
GATA4ENSG00000136574.13354.01160557.53430-0.655304.327503.38330HepG2DDX55
GATA4ENSG00000136574.13578.348001099.64820-0.927006.298904.84940HepG2DDX59
GATA4ENSG00000136574.13523.38920832.49010-0.669505.052104.24000HepG2DDX6
GATA4ENSG00000136574.13964.17080646.387400.576808.122607.08000HepG2DKC1
GATA4ENSG00000136574.13612.65510475.650100.365102.630301.99190HepG2DNAJC2
GATA4ENSG00000136574.13673.72930460.546800.548705.053203.64680HepG2EIF3G
GATA4ENSG00000136574.131339.99530884.261900.599605.005504.14930HepG2EIF4A3
GATA4ENSG00000136574.13858.86000721.795600.250702.169401.41260HepG2EIF4G1
GATA4ENSG00000136574.13699.448401196.17970-0.774106.561105.42670HepG2FIP1L1
GATA4ENSG00000136574.13530.84590794.98910-0.582605.703804.58760HepG2FUBP3
GATA4ENSG00000136574.13596.19340827.68840-0.473303.132702.42660HepG2G3BP1
GATA4ENSG00000136574.13727.50940490.245600.569404.535303.38000HepG2GEMIN5
GATA4ENSG00000136574.131402.735601097.756900.353602.267601.68500HepG2GPKOW
GATA4ENSG00000136574.13972.46360484.430101.0053014.9265013.61970HepG2HNRNPA1
GATA4ENSG00000136574.13479.34460672.35050-0.488204.602803.44860HepG2HNRNPA2B1
GATA4ENSG00000136574.13768.95580538.857000.512904.099003.26720HepG2HNRNPC
GATA4ENSG00000136574.131077.47150866.133400.314903.204402.43650HepG2HNRNPF
GATA4ENSG00000136574.13640.93340838.28580-0.387302.550901.87940HepG2HNRNPK
GATA4ENSG00000136574.131299.821501047.606300.311102.012401.46680HepG2HNRNPLL
GATA4ENSG00000136574.131243.11230852.894300.543406.766705.67940HepG2IGF2BP1
GATA4ENSG00000136574.13684.72250546.781100.324503.164702.38570HepG2ILF2
GATA4ENSG00000136574.13579.04530419.723700.464102.481301.37020HepG2KHDRBS1
GATA4ENSG00000136574.13619.17550846.25460-0.450702.513101.56820HepG2KHSRP
GATA4ENSG00000136574.131540.00610892.639000.786706.639705.63570HepG2MAGOH
GATA4ENSG00000136574.13299.30340576.24580-0.945105.882604.39570HepG2METAP2
GATA4ENSG00000136574.13769.90470968.24250-0.330702.252101.51860HepG2MSI2
GATA4ENSG00000136574.13785.94050512.034100.618102.545101.50080HepG2NONO
GATA4ENSG00000136574.13656.86910477.435500.460204.306103.40780HepG2PPIL4
GATA4ENSG00000136574.131165.04930692.478200.7505010.749009.67710HepG2PUF60
GATA4ENSG00000136574.131103.64880688.180200.6813013.3473012.17040HepG2PUS1
GATA4ENSG00000136574.13723.74020944.56000-0.384203.509902.81770HepG2QKI
GATA4ENSG00000136574.13324.33390510.06120-0.653202.903002.18280HepG2RAVER1
GATA4ENSG00000136574.13884.423701194.81570-0.434004.522503.45850HepG2RBM15
GATA4ENSG00000136574.13695.90620933.36210-0.423504.464203.84730HepG2RBM22
GATA4ENSG00000136574.13705.32580434.559900.698605.444303.95010HepG2RCC2
GATA4ENSG00000136574.131135.43870970.599100.226201.762501.31010HepG2NELFE
GATA4ENSG00000136574.131137.24910933.034900.285401.954201.36780HepG2RPLP0
GATA4ENSG00000136574.13693.90770535.824700.372902.512501.92390HepG2RPS19
GATA4ENSG00000136574.13767.35550493.529300.636705.258804.17580HepG2RPS2
GATA4ENSG00000136574.13803.29610442.304800.860807.065405.79880HepG2RPS3A
GATA4ENSG00000136574.13286.19050425.36740-0.571703.051702.23240HepG2RRP9
GATA4ENSG00000136574.132408.974101243.808600.9536010.602809.21880HepG2SF3A3
GATA4ENSG00000136574.13820.13850664.054000.304503.173002.42960HepG2SLBP
GATA4ENSG00000136574.13787.86250520.860100.596903.892502.73920HepG2SMNDC1
GATA4ENSG00000136574.13709.163201153.77500-0.702204.617903.59790HepG2SNRNP70
GATA4ENSG00000136574.13343.557201054.18620-1.6175054.3306052.84580HepG2SRFBP1
GATA4ENSG00000136574.131010.86220850.946700.248302.116001.49800HepG2SRSF7
GATA4ENSG00000136574.13337.76130771.04570-1.1908026.2750024.90050HepG2SRSF9
GATA4ENSG00000136574.131465.57190915.262200.6791015.0552014.05120HepG2SSB
GATA4ENSG00000136574.13484.65700851.85560-0.8136012.5730011.50790HepG2TAF15
GATA4ENSG00000136574.131256.578101020.994500.299402.029501.39670HepG2TARDBP
GATA4ENSG00000136574.13264.15720371.97990-0.493802.343301.42010HepG2TFIP11
GATA4ENSG00000136574.131126.81920520.069101.1154023.7262022.53190HepG2TIAL1
GATA4ENSG00000136574.13911.05430676.581800.429203.952802.88580HepG2TUFM
GATA4ENSG00000136574.131332.872301023.329700.381202.907902.26470HepG2U2AF1
GATA4ENSG00000136574.131166.65420600.403900.958302.927501.90880HepG2U2AF2
GATA4ENSG00000136574.13850.244501103.06890-0.375604.637403.77170HepG2UPF1
GATA4ENSG00000136574.13748.09350546.332000.453302.614201.90970HepG2XRN2
GATA4ENSG00000136574.131001.673501213.16340-0.276403.337102.75290HepG2ZNF622
GATA4ENSG00000136574.1327.930801.261004.469205.570004.38480K562PCBP3
GATA4ENSG00000136574.1315.628800.966404.015303.475902.57210K562POLR2G
GATA4ENSG00000136574.1310.139600.0000099999.999902.528401.81140K562PRPF8
GATA4ENSG00000136574.1311.919900.520604.517003.123202.20000K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GATA4 is not available on ENCORE database.





3 RBPs can affect the splicing of GATA4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGATA4ENSG00000136574.13chr8+1156342211563542115617301156181311565364115655230.229000.000240.05671includedHepG2DKC1
SEGATA4ENSG00000136574.13chr8+115634221156354211561730115618131156536411566171-0.741000.000720.04449excludedHepG2NCBP2
SEGATA4ENSG00000136574.13chr8+115634221156354211561730115618131156536411566171-0.301000.001770.07417excludedHepG2PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GATA4 is not avaliable on ENCORE database.