FAM199X

General Information

Gene Name       : FAM199X
Gene ID             : ENSG00000123575.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM199X)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM199XENSG00000123575.86.555.846.20ENCSR000AEF
HepG2FAM199XENSG00000123575.86.1810.948.56ENCSR985KAT
K562FAM199XENSG00000123575.89.3610.379.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM199X is not avaliable on ENCORE database.



Proteins bound to RNA

  • FAM199X RNA is bound by 18 proteins.  







eCLIP assay for FAM199X is not avaliable on ENCORE database.





18 proteins are bound to FAM199X RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX103436756103436836+3'-UTR3.778028.53392K562FAM120A
chrX103436128103436239+3'-UTR3.0726212.22248K562FAM120A
chrX103434380103434474+3'-UTR,CDS3.229325.94292K562ZNF622
chrX103436623103436656+3'-UTR3.160686.99055K562UPF1
chrX103437041103437086+3'-UTR4.198807.07901K562FAM120A
chrX103437000103437100+3'-UTR3.5827010.10243K562QKI
chrX103439705103439751+3'-UTR3.581359.80258K562PUM2
chrX103436490103436548+3'-UTR3.709468.68313K562FAM120A
chrX103437019103437070+3'-UTR3.510187.91099K562UPF1
chrX103436548103436603+3'-UTR3.926087.60958K562FAM120A
chrX103439652103439701+3'-UTR5.2425353.08276K562PUM2
chrX103436135103436194+3'-UTR4.234087.11247HepG2UPF1
chrX103438429103438470+3'-UTR3.049485.65964K562UPF1
chrX103437175103437228+3'-UTR3.687266.04577K562FAM120A
chrX103436879103436919+3'-UTR3.523416.25570K562UPF1
chrX103438924103439031+3'-UTR4.2805517.64936K562FAM120A
chrX103437955103437996+3'-UTR3.148805.88982K562FAM120A
chrX103439112103439121+3'-UTR4.131343.56427K562FAM120A
chrX103436759103436798+3'-UTR3.985727.71860K562UPF1
chrX103438396103438429+3'-UTR3.397645.05294K562UPF1
chrX103436546103436580+3'-UTR4.163897.12652K562UPF1
chrX103436211103436268+3'-UTR4.3106312.07826K562UPF1
chrX103439616103439652+3'-UTR5.8616324.25935K562PUM2
chrX103438933103438970+3'-UTR3.252896.48866K562UPF1
chrX103438970103439030+3'-UTR3.9579911.60337K562UPF1
chrX103411303103411464+5'-UTR3.897759.23400HepG2DDX3X
chrX103411514103411573+CDS4.301433.99162HepG2DDX3X
chrX103432668103432745+CDS,intron-Proximal5.143396.40247K562SF3B4
chrX103420270103420327+CDS,intron-Proximal4.116074.52312K562AQR
chrX103420326103420417+CDS5.148037.58445K562RBM15
chrX103432765103432877+CDS,intron-Proximal3.805354.17155HepG2BCLAF1
chrX103432789103432866+CDS,intron-Proximal3.676218.82426K562ZNF622
chrX103432777103432885+CDS,intron-Proximal3.357097.21479K562UCHL5
chrX103411484103411562+CDS3.304975.23038K562ZNF622
chrX103420436103420497+CDS5.004597.93248K562RBM15
chrX103411555103411620+CDS3.387363.63681K562RBM15
chrX103434374103434443+CDS3.030133.46619K562GRWD1
chrX103432711103432777+CDS,intron-Proximal3.540584.74268K562UCHL5
chrX103430743103430808+CDS,intron-Proximal3.773823.58455K562U2AF2
chrX103431225103431304+CDS,intron-Proximal3.450113.68471HepG2BCLAF1
chrX103420266103420402+CDS,intron-Proximal4.088687.66928K562BUD13
chrX103432729103432780+CDS3.936845.08507K562ZNF622
chrX103432803103432863+CDS,intron-Proximal3.664073.19539K562YBX3
chrX103427575103427672+intron-Distal4.725249.57828K562QKI
chrX103420633103420763+intron-Distal4.3250210.28391K562KHSRP
chrX103420763103420854+intron-Distal3.751036.62503K562KHSRP
chrX103427577103427658+intron-Distal4.895627.27974HepG2QKI
chrX103411857103412030+intron-Distal3.886633.11802K562HNRNPK
chrX103411884103412000+intron-Distal4.861476.17200HepG2PCBP2
chrX103428771103428889+intron-Distal5.171169.71683K562KHSRP
chrX103428668103428733+intron-Distal3.629823.00614K562U2AF2
chrX103430709103430743+intron-Proximal3.556923.21003K562U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM199X is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM199X is not available on ENCORE database.

  • 72 RBPs can affect the levels of FAM199X.  








The Knockdown/knockout RNA-Seq assay for FAM199X is not available on ENCORE database.





72 RBPs can affect the gene expression of FAM199X :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM199XENSG00000123575.8662.43260890.48470-0.426803.105502.05380HepG2ADAR
FAM199XENSG00000123575.81984.355901595.019300.315004.204303.39070HepG2AUH
FAM199XENSG00000123575.8645.412001027.16060-0.670404.748903.52260HepG2BCCIP
FAM199XENSG00000123575.8648.00570818.79110-0.337502.061401.45730HepG2CPSF6
FAM199XENSG00000123575.81229.102501392.04170-0.179602.049701.39790HepG2DAZAP1
FAM199XENSG00000123575.8999.78680812.011700.300001.926801.34830HepG2DDX21
FAM199XENSG00000123575.81087.90590794.319200.453704.350903.19660HepG2DDX24
FAM199XENSG00000123575.81962.637601361.159300.527904.915604.10120HepG2DDX3X
FAM199XENSG00000123575.8747.06620888.73140-0.250502.367001.75460HepG2DNAJC2
FAM199XENSG00000123575.8934.86810648.431300.527704.334503.22250HepG2EIF3D
FAM199XENSG00000123575.81225.02310963.354600.346602.222801.52860HepG2FIP1L1
FAM199XENSG00000123575.81097.66630840.621600.384802.946701.63860HepG2FKBP4
FAM199XENSG00000123575.8823.519701162.63950-0.497503.754502.98320HepG2G3BP1
FAM199XENSG00000123575.8493.35150928.17020-0.911809.601708.45680HepG2GPKOW
FAM199XENSG00000123575.8742.99620905.28480-0.285001.841301.30140HepG2HNRNPA1
FAM199XENSG00000123575.8803.35430987.37800-0.297602.499501.81690HepG2HNRNPF
FAM199XENSG00000123575.81072.163201268.11750-0.242202.828602.14900HepG2HNRNPL
FAM199XENSG00000123575.8738.688601000.29070-0.437405.484404.65300HepG2HNRNPU
FAM199XENSG00000123575.8709.742201021.76650-0.525709.291208.02840HepG2ILF2
FAM199XENSG00000123575.8994.44850780.024300.350303.044602.19670HepG2MSI2
FAM199XENSG00000123575.81619.634901290.457300.327702.084301.53070HepG2NCBP2
FAM199XENSG00000123575.8831.34060990.13540-0.252202.144201.39100HepG2PARN
FAM199XENSG00000123575.8664.727201058.89190-0.6717011.7539010.64180HepG2PCBP1
FAM199XENSG00000123575.8665.90400892.18200-0.422004.389503.48140HepG2PPIL4
FAM199XENSG00000123575.81362.333501077.451500.338404.117503.47990HepG2PTBP1
FAM199XENSG00000123575.81654.090901398.590500.242002.803402.20730HepG2PUM1
FAM199XENSG00000123575.81678.286901397.618200.263902.037701.45610HepG2PUM2
FAM199XENSG00000123575.81751.848901166.929200.586109.396708.34520HepG2QKI
FAM199XENSG00000123575.81646.806901059.054700.636809.166707.99470HepG2RBM25
FAM199XENSG00000123575.81636.613301199.108900.448706.840206.05580HepG2NELFE
FAM199XENSG00000123575.81013.475001320.01660-0.381202.055701.36620HepG2RPS3A
FAM199XENSG00000123575.8680.83240890.81200-0.387804.444303.66090HepG2SAFB2
FAM199XENSG00000123575.8655.48480876.74050-0.419603.024902.28880HepG2SF3B1
FAM199XENSG00000123575.8556.329901038.85220-0.9010022.5074020.95110HepG2SMN1
FAM199XENSG00000123575.82531.473901728.762900.5501014.2648013.36240HepG2SRFBP1
FAM199XENSG00000123575.81825.034701170.893000.6402014.3524013.45510HepG2SRSF1
FAM199XENSG00000123575.8810.64180970.03250-0.259001.969501.37130HepG2SRSF7
FAM199XENSG00000123575.81302.130601501.01500-0.205101.918801.47180HepG2SSB
FAM199XENSG00000123575.81292.651201052.422800.296502.720502.16430HepG2TAF15
FAM199XENSG00000123575.8651.48850863.33310-0.406202.836802.10440HepG2TARDBP
FAM199XENSG00000123575.81276.52370967.056000.400404.041203.03640HepG2TIA1
FAM199XENSG00000123575.8652.84770972.02570-0.574205.879105.20180HepG2TIAL1
FAM199XENSG00000123575.8686.97580980.65440-0.513507.422806.57570HepG2TRIM56
FAM199XENSG00000123575.81200.09910824.285500.541805.531704.66060HepG2U2AF1
FAM199XENSG00000123575.8371.87140593.96730-0.675605.002503.97570HepG2UCHL5
FAM199XENSG00000123575.81177.32790993.248900.245202.206301.65810HepG2UTP3
FAM199XENSG00000123575.81467.194201003.515800.547903.423702.00220HepG2XRCC5
FAM199XENSG00000123575.8554.95150989.68640-0.834608.063306.83770HepG2XRN2
FAM199XENSG00000123575.81219.44500959.304100.346102.396401.59060K562BOP1
FAM199XENSG00000123575.8423.63330586.19070-0.468602.985201.88370K562CCAR1
FAM199XENSG00000123575.81621.004902007.68060-0.308603.568802.30540K562CPEB4
FAM199XENSG00000123575.8819.716701020.02120-0.315402.401901.66630K562CPSF6
FAM199XENSG00000123575.84129.117103511.784600.233502.803101.82270K562CELF1
FAM199XENSG00000123575.82922.607002077.664400.4922010.967109.76800K562DDX47
FAM199XENSG00000123575.81389.449001665.54300-0.261502.596701.89510K562EIF2S2
FAM199XENSG00000123575.81724.603701330.135300.374602.547201.55860K562EIF3D
FAM199XENSG00000123575.81087.167001460.55020-0.425902.789301.96430K562EIF4A3
FAM199XENSG00000123575.8977.300501365.43830-0.482504.677503.55360K562FIP1L1
FAM199XENSG00000123575.81590.793201206.159200.399204.279602.56870K562FUS
FAM199XENSG00000123575.82283.982201534.683200.573504.572003.61220K562G3BP2
FAM199XENSG00000123575.81663.343202219.64330-0.416204.550603.58380K562GRSF1
FAM199XENSG00000123575.8539.200101049.66440-0.9610015.0674013.75970K562HNRNPC
FAM199XENSG00000123575.81436.887101877.58670-0.385903.980902.68650K562HNRNPL
FAM199XENSG00000123575.81539.311501966.99640-0.353703.422802.48300K562MAGOH
FAM199XENSG00000123575.81176.810101550.08110-0.397502.975602.12070K562PPIG
FAM199XENSG00000123575.8620.32300941.11480-0.601405.858704.46670K562PSIP1
FAM199XENSG00000123575.81454.989101911.00600-0.393304.407103.58810K562PTBP1
FAM199XENSG00000123575.84117.795703314.673800.312904.355602.99040K562PUM1
FAM199XENSG00000123575.82761.654001695.112000.7041010.011509.02540K562PUS1
FAM199XENSG00000123575.82105.906001651.605500.350504.356403.62990K562RBM15
FAM199XENSG00000123575.81391.718701832.82300-0.397203.711902.72770K562RBM22
FAM199XENSG00000123575.81075.035001558.66270-0.535906.195803.51340K562RECQL
FAM199XENSG00000123575.81626.845201231.359600.401703.015102.16240K562RPS19
FAM199XENSG00000123575.81858.791501543.538400.268002.926102.08990K562SF3A3
FAM199XENSG00000123575.81321.269401596.10210-0.272602.381901.59100K562SF3B4
FAM199XENSG00000123575.81084.403101663.27950-0.617104.114601.96920K562SMN1
FAM199XENSG00000123575.8574.78580813.89430-0.501804.062202.74460K562SRFBP1
FAM199XENSG00000123575.8814.587901153.62530-0.502002.748301.70310K562SRSF4
FAM199XENSG00000123575.81374.619301828.97520-0.412004.644403.54290K562TIA1
FAM199XENSG00000123575.81355.126101658.61580-0.291603.780202.95300K562UPF1
FAM199XENSG00000123575.81779.667501475.837500.270003.585202.62970K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM199X is not available on ENCORE database.





6 RBPs can affect the splicing of FAM199X :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM199XENSG00000123575.8chrX+103430746103430896103420303103420523103431140103431302-0.101000.004430.06891excludedK562SRSF1
SEFAM199XENSG00000123575.8chrX+103430746103430896103420303103420523103431140103431252-0.087000.001110.01333excludedK562AQR
SEFAM199XENSG00000123575.8chrX+103430746103430896103420303103420523103431140103431302-0.088000.000050.00124excludedK562PUS1
SEFAM199XENSG00000123575.8chrX+103430746103430896103420303103420523103431140103431302-0.057000.002070.05874excludedK562UTP18
SEFAM199XENSG00000123575.8chrX+1034307461034308961034203031034205231034311401034313020.065000.006040.08370includedK562U2AF2
SEFAM199XENSG00000123575.8chrX+103430746103430896103420303103420523103431140103431302-0.064000.001560.03912excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM199X is not avaliable on ENCORE database.