EXT1

General Information

Gene Name       : EXT1
Gene ID             : ENSG00000182197.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EXT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EXT1ENSG00000182197.114.394.974.68ENCSR000AEF
HepG2EXT1ENSG00000182197.1122.3817.7520.06ENCSR985KAT
K562EXT1ENSG00000182197.111.791.081.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EXT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • EXT1 RNA is bound by 21 proteins.  







eCLIP assay for EXT1 is not avaliable on ENCORE database.





21 proteins are bound to EXT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8118847641118847715-3'-UTR,CDS,intron-Distal,intron-Proximal5.391229.94888HepG2PRPF8
chr8118825163118825230-3'-UTR,CDS,intron-Distal,intron-Proximal4.242863.79000HepG2U2AF2
chr8119124011119124060-5'-UTR,intron-Distal5.9199518.41043HepG2DDX3X
chr8119123725119123806-5'-UTR,intron-Distal4.9877018.10756HepG2DDX3X
chr8119123902119124068-5'-UTR,intron-Distal3.276119.25612HepG2NCBP2
chr8119123877119124011-5'-UTR,intron-Distal5.2728341.05756HepG2DDX3X
chr8119039373119039424-intron-Distal4.218803.50357HepG2QKI
chr8118997580118997646-intron-Distal4.766676.36848HepG2SUGP2
chr8119037862119037900-intron-Distal3.139094.67779HepG2SUGP2
chr8119048994119049105-intron-Distal3.231713.69754HepG2TAF15
chr8119085574119085614-intron-Distal5.205098.13723HepG2PTBP1
chr8119088098119088162-intron-Distal4.247673.97018HepG2HNRNPM
chr8118989657118989770-intron-Distal3.350144.30137HepG2PTBP1
chr8118997248118997332-intron-Distal4.016696.45086HepG2MATR3
chr8118887937118887991-intron-Distal3.833343.09122HepG2PTBP1
chr8119004876119004942-intron-Distal3.121074.53269HepG2HNRNPM
chr8118943684118943772-intron-Distal5.0420615.70711HepG2PCBP2
chr8119065496119065544-intron-Distal5.354516.29945HepG2XPO5
chr8119055307119055367-intron-Distal3.858869.40568HepG2HNRNPM
chr8119056020119056112-intron-Distal4.792499.77080HepG2HNRNPM
chr8119064923119065004-intron-Distal3.455774.33990HepG2QKI
chr8119086302119086359-intron-Distal4.602765.33511HepG2HNRNPK
chr8118997446118997529-intron-Distal3.889895.62053HepG2HNRNPM
chr8119035572119035617-intron-Distal3.172843.12625HepG2QKI
chr8119061130119061187-intron-Distal3.765938.40145HepG2HNRNPM
chr8119001251119001304-intron-Distal3.034815.98764HepG2HNRNPC
chr8119060507119060567-intron-Distal4.889896.44072HepG2HNRNPM
chr8118871015118871084-intron-Distal5.8479913.96526HepG2PTBP1
chr8119089453119089586-intron-Distal3.109464.41394HepG2HNRNPM
chr8118967009118967069-intron-Distal4.526145.37406HepG2HNRNPM
chr8119016491119016612-intron-Distal3.441756.35060HepG2HNRNPL
chr8119060293119060322-intron-Distal3.919643.27946HepG2HNRNPM
chr8119055756119055780-intron-Distal4.550865.42395HepG2HNRNPM
chr8118923726118923803-intron-Distal4.511864.66899HepG2HNRNPM
chr8118986030118986065-intron-Distal5.253999.48199HepG2PTBP1
chr8118988671118988758-intron-Distal3.203883.78819HepG2SFPQ
chr8119034830119034883-intron-Distal3.934893.82697HepG2HNRNPC
chr8119027812119027886-intron-Distal3.285643.39827HepG2MATR3
chr8119085359119085430-intron-Distal5.2489214.62925HepG2QKI
chr8119086293119086366-intron-Distal3.563675.11028HepG2PCBP2
chr8119086375119086420-intron-Distal4.310665.38800HepG2PCBP2
chr8119035920119035969-intron-Distal3.811143.03891HepG2PTBP1
chr8118997365118997409-intron-Distal4.159983.96879HepG2MATR3
chr8118963727118963811-intron-Distal3.245664.35314HepG2U2AF2
chr8118997786118997844-intron-Distal3.216105.35016HepG2SUGP2
chr8118966916118966970-intron-Distal3.301123.66782HepG2HNRNPM
chr8119031442119031525-intron-Distal5.6867940.55934HepG2PTBP1
chr8119074608119074696-intron-Distal4.309764.32882HepG2MATR3
chr8118988992118989072-intron-Distal6.4672022.51030HepG2QKI
chr8119112095119112145-intron-Distal3.709694.28420HepG2HNRNPM
chr8119086367119086429-intron-Distal5.274329.78389HepG2HNRNPK
chr8119037873119037951-intron-Distal4.328885.67326HepG2HNRNPC
chr8119108791119108862-intron-Distal6.7529218.94347HepG2PCBP2
chr8119030062119030119-intron-Distal4.9039913.66955HepG2HNRNPM
chr8119074754119074814-intron-Distal3.659234.38996HepG2HNRNPM
chr8119080926119081005-intron-Distal4.288725.02991HepG2CSTF2
chr8118986750118986796-intron-Distal4.603624.74221HepG2PTBP1
chr8119072190119072260-intron-Distal4.394629.46032HepG2HNRNPM
chr8118985981118986010-intron-Distal3.616147.75853HepG2PTBP1
chr8119108794119108880-intron-Distal5.2203327.82199HepG2PTBP1
chr8119117553119117609-intron-Distal4.104265.89423HepG2HNRNPM
chr8119111545119111684-intron-Distal3.926326.74598HepG2QKI
chr8119038166119038211-intron-Distal3.767796.25619HepG2SUGP2
chr8119097658119097702-intron-Distal5.6031410.85098HepG2QKI
chr8119097565119097596-intron-Distal3.850078.94372HepG2QKI
chr8118960512118960539-intron-Distal3.442329.03835HepG2HNRNPC
chr8119085809119085901-intron-Distal6.70650400.00000HepG2PTBP1
chr8118997342118997381-intron-Distal3.258803.59523HepG2SUGP2
chr8118993084118993131-intron-Distal5.280317.29411HepG2XPO5
chr8119057382119057432-intron-Distal4.659375.81617HepG2QKI
chr8119060403119060466-intron-Distal4.535514.66899HepG2HNRNPM
chr8119097596119097658-intron-Distal7.3877444.31566HepG2QKI
chr8119108789119108870-intron-Distal3.710198.80115HepG2U2AF2
chr8118888032118888096-intron-Distal3.288083.48223HepG2RBFOX2
chr8119085801119085890-intron-Distal4.3321913.95660HepG2MATR3
chr8118924188118924316-intron-Distal5.024277.45191HepG2PTBP1
chr8119085430119085493-intron-Distal4.376197.41529HepG2QKI
chr8119108804119108866-intron-Distal4.317083.91475K562PTBP1
chr8119055614119055681-intron-Distal4.389425.89423HepG2HNRNPM
chr8119037089119037176-intron-Distal3.779998.95102HepG2HNRNPL
chr8119070965119071019-intron-Distal4.442835.20135HepG2QKI
chr8118942953118943022-intron-Distal3.525973.94088HepG2QKI
chr8119071736119071794-intron-Distal4.195548.02251HepG2HNRNPM
chr8118985938118985981-intron-Distal4.2010911.97743HepG2PTBP1
chr8119080450119080510-intron-Distal3.252885.97243HepG2U2AF2
chr8119036713119036749-intron-Distal3.118183.00129HepG2SUGP2
chr8119114897119114998-intron-Distal3.022353.73766HepG2SFPQ
chr8119040512119040537-intron-Distal4.494216.57443HepG2HNRNPC
chr8119086260119086366-intron-Distal3.108026.08418HepG2DDX59
chr8119085824119085902-intron-Distal5.600607.41017K562PTBP1
chr8119112298119112379-intron-Distal3.871635.28337HepG2HNRNPM
chr8119091837119091904-intron-Distal4.345694.13073HepG2GTF2F1
chr8118943687118943780-intron-Distal4.602765.33511HepG2HNRNPK
chr8119000366119000432-intron-Distal5.467699.73701HepG2QKI
chr8119037398119037453-intron-Distal3.846764.28254HepG2MATR3
chr8118989656118989790-intron-Distal6.7693147.43163HepG2QKI
chr8118958704118958779-intron-Distal4.6770810.53160HepG2XPO5
chr8118997785118997839-intron-Distal3.699754.94624HepG2MATR3
chr8119117264119117360-intron-Distal4.046853.88645HepG2FUS
chr8118989093118989107-intron-Distal4.648715.85495HepG2QKI
chr8118989682118989768-intron-Distal4.753327.30165K562QKI
chr8118986013118986030-intron-Distal3.827247.92999HepG2PTBP1
chr8119053829119053945-intron-Distal4.4486420.73748HepG2PTBP1
chr8118986314118986360-intron-Distal3.189656.89056HepG2PTBP1
chr8119055473119055538-intron-Distal3.558417.24726HepG2HNRNPM
chr8118922598118922680-intron-Distal4.2497212.97957HepG2HNRNPM
chr8118885125118885189-intron-Distal4.926325.05488HepG2QKI
chr8118820923118821046-intron-Distal3.963263.45317HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EXT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EXT1 is not available on ENCORE database.

  • 69 RBPs can affect the levels of EXT1.  








The Knockdown/knockout RNA-Seq assay for EXT1 is not available on ENCORE database.





69 RBPs can affect the gene expression of EXT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EXT1ENSG00000182197.61311.077001035.325000.340604.481003.74360HepG2ACO1
EXT1ENSG00000182197.6846.609401040.23200-0.297102.889602.10690HepG2AKAP8L
EXT1ENSG00000182197.61823.446801310.148200.476808.233407.15370HepG2AUH
EXT1ENSG00000182197.61916.15620842.996701.1845025.8192024.29810HepG2BOP1
EXT1ENSG00000182197.61419.51530961.831100.561407.529206.34310HepG2CALR
EXT1ENSG00000182197.6851.039501257.21580-0.562905.217204.17310HepG2CIRBP
EXT1ENSG00000182197.6724.499101108.48990-0.613503.589502.71260HepG2CNOT7
EXT1ENSG00000182197.61524.87670773.911700.9784015.7854014.30780HepG2CPSF6
EXT1ENSG00000182197.61881.966301274.974900.5617011.2634010.13970HepG2CELF1
EXT1ENSG00000182197.61653.872301370.709900.270804.176303.29430HepG2DAZAP1
EXT1ENSG00000182197.6770.47920957.55090-0.313603.511902.58620HepG2DDX19B
EXT1ENSG00000182197.61264.51240990.483900.352302.703802.03280HepG2DDX21
EXT1ENSG00000182197.61848.88520878.835301.072908.868007.17750HepG2DDX59
EXT1ENSG00000182197.6674.728401060.50820-0.652406.807405.27900HepG2DDX5
EXT1ENSG00000182197.6773.01720977.58610-0.338703.202802.45110HepG2DNAJC21
EXT1ENSG00000182197.6677.73300911.60540-0.427702.473501.43300HepG2AGO1
EXT1ENSG00000182197.61638.919801265.146200.373302.702202.11660HepG2EIF2S1
EXT1ENSG00000182197.61827.115501398.163300.385902.602901.98190HepG2EIF4A3
EXT1ENSG00000182197.62085.993501361.254700.615704.723503.83890HepG2EIF4B
EXT1ENSG00000182197.61739.499901352.462800.363005.622604.50140HepG2EIF4G1
EXT1ENSG00000182197.61235.316501011.743200.287902.177101.43690HepG2EWSR1
EXT1ENSG00000182197.61207.14820943.594100.355302.835701.67750HepG2FASTKD2
EXT1ENSG00000182197.6666.89270884.40950-0.407303.273102.42270HepG2FUBP3
EXT1ENSG00000182197.6910.429301308.58610-0.523404.236103.42100HepG2G3BP1
EXT1ENSG00000182197.6959.290001389.17360-0.534204.901703.70530HepG2G3BP2
EXT1ENSG00000182197.61246.40630877.275100.506603.908203.15830HepG2GPKOW
EXT1ENSG00000182197.6784.88850986.95170-0.330502.385301.78180HepG2HNRNPA1
EXT1ENSG00000182197.6892.714001097.80230-0.298301.978101.38100HepG2HNRNPC
EXT1ENSG00000182197.6659.83300960.15710-0.541203.422301.72340HepG2HNRNPD
EXT1ENSG00000182197.6545.716901324.95780-1.2797023.7273021.87680HepG2HNRNPK
EXT1ENSG00000182197.61326.31600837.201100.663706.472405.55410HepG2HNRNPLL
EXT1ENSG00000182197.6711.00590925.45390-0.380302.956501.97320HepG2HNRNPM
EXT1ENSG00000182197.6876.549301090.54420-0.315103.408702.74240HepG2HNRNPU
EXT1ENSG00000182197.61033.560501425.15210-0.463503.055101.75540HepG2HSPD1
EXT1ENSG00000182197.61939.781801248.238500.635902.247401.36940HepG2IGF2BP3
EXT1ENSG00000182197.6956.589401337.88900-0.484003.064702.00180HepG2KHSRP
EXT1ENSG00000182197.61215.23250949.581300.355802.828801.60160HepG2LIN28B
EXT1ENSG00000182197.6772.533201452.44370-0.9108011.5004010.25220HepG2NCBP2
EXT1ENSG00000182197.6386.31010742.34910-0.9423010.495309.11570HepG2NSUN2
EXT1ENSG00000182197.61526.398201276.123800.258302.762202.15590HepG2PCBP1
EXT1ENSG00000182197.6680.86660972.67810-0.514606.421605.33310HepG2PPIL4
EXT1ENSG00000182197.6864.178301030.47870-0.253902.148801.45990HepG2PRPF4
EXT1ENSG00000182197.6849.254101297.53480-0.611507.190006.28570HepG2PUF60
EXT1ENSG00000182197.61143.690601377.45580-0.268303.012502.39960HepG2PUM1
EXT1ENSG00000182197.6782.761701406.31080-0.8453016.5135015.17130HepG2QKI
EXT1ENSG00000182197.62657.193801164.165901.1905011.4542010.09300HepG2RAVER1
EXT1ENSG00000182197.61548.039401257.294300.300003.084002.54520HepG2RBM22
EXT1ENSG00000182197.6470.90860885.43430-0.910908.866306.97690HepG2RCC2
EXT1ENSG00000182197.61203.681601445.11010-0.263702.728902.19070HepG2NELFE
EXT1ENSG00000182197.6960.927701345.92480-0.486107.440406.50220HepG2RECQL
EXT1ENSG00000182197.61707.133101346.967700.341802.761502.07920HepG2RPLP0
EXT1ENSG00000182197.6803.589501143.61900-0.509102.802101.85170HepG2RPS10
EXT1ENSG00000182197.61550.241401112.913300.478103.029802.19390HepG2RPS3A
EXT1ENSG00000182197.6829.78320607.922600.448702.649401.87800HepG2RRP9
EXT1ENSG00000182197.6735.14580971.17720-0.401704.971404.15100HepG2SAFB2
EXT1ENSG00000182197.61020.12580792.186000.364702.532501.63060HepG2SERBP1
EXT1ENSG00000182197.61044.423201244.26760-0.252602.454001.78720HepG2SLBP
EXT1ENSG00000182197.61850.841401420.044000.382106.112505.44800HepG2SRFBP1
EXT1ENSG00000182197.61437.245801228.472900.226302.201101.57250HepG2SRSF7
EXT1ENSG00000182197.61134.09680816.049200.474704.143603.27840HepG2TARDBP
EXT1ENSG00000182197.6826.127401059.66380-0.359203.256002.72030HepG2TIAL1
EXT1ENSG00000182197.61024.074901267.74310-0.307902.160101.39420HepG2TUFM
EXT1ENSG00000182197.61663.496101147.378500.535805.511104.64210HepG2U2AF1
EXT1ENSG00000182197.6923.517801119.46130-0.277602.867002.15750HepG2UPF1
EXT1ENSG00000182197.6576.21800780.71020-0.438202.773802.04800HepG2XRN2
EXT1ENSG00000182197.61846.288801231.194900.584507.086406.31630HepG2ZNF622
EXT1ENSG00000182197.655.12500105.10790-0.931103.189302.54650K562FXR1
EXT1ENSG00000182197.637.3762091.61230-1.293405.020504.14930K562PTBP1
EXT1ENSG00000182197.6220.0997079.565801.467804.376702.76250K562SF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EXT1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of EXT1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for EXT1 is not avaliable on ENCORE database.