EPDR1

General Information

Gene Name       : EPDR1
Gene ID             : ENSG00000086289.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EPDR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EPDR1ENSG00000086289.112.762.462.61ENCSR000AEF
HepG2EPDR1ENSG00000086289.1123.6134.1328.87ENCSR985KAT
K562EPDR1ENSG00000086289.110.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EPDR1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • EPDR1 RNA is bound by 13 proteins.  







eCLIP assay for EPDR1 is not avaliable on ENCORE database.





13 proteins are bound to EPDR1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr73799041737990521+3'-UTR6.0808433.98843HepG2UPF1
chr73799130737991380+3'-UTR4.427074.23960HepG2TIAL1
chr73799044837990479+3'-UTR4.0948413.09236HepG2FAM120A
chr73799088637990913+3'-UTR4.595925.65195HepG2FAM120A
chr73799060937990692+3'-UTR4.5930511.31667HepG2UPF1
chr73799024737990327+3'-UTR5.134208.73200HepG2UPF1
chr73799050437990537+3'-UTR4.4514711.16601HepG2FAM120A
chr73799131637991372+3'-UTR3.036113.89964HepG2AKAP1
chr73799089437991007+3'-UTR4.141934.82094HepG2IGF2BP3
chr73799010337990162+3'-UTR4.038363.72865HepG2LIN28B
chr73799084437990985+3'-UTR5.259847.27295HepG2AKAP1
chr73799043037990448+3'-UTR3.753675.14869HepG2FAM120A
chr73799113037991191+3'-UTR3.877324.59124HepG2FUBP3
chr73799047937990504+3'-UTR4.2887713.80214HepG2FAM120A
chr73799111537991176+3'-UTR3.015793.33646HepG2AKAP1
chr73799042137990508+3'-UTR3.128615.38701HepG2AKAP1
chr73799094837990980+3'-UTR3.664674.32275HepG2FAM120A
chr73796047637960543+5'-UTR,CDS,intron-Distal4.1329116.83699HepG2DDX3X
chr73796026637960492+5'-UTR,CDS,intron-Distal3.161455.73981HepG2GRWD1
chr73796030737960392+5'-UTR,CDS,intron-Distal4.9126217.39050HepG2DDX3X
chr73796044537960601+5'-UTR,CDS,intron-Distal5.3873316.69734HepG2RPS3
chr73796054337960609+CDS,intron-Distal3.8880718.65300HepG2DDX3X
chr73796074737960803+CDS,intron-Distal4.378403.31432HepG2SND1
chr73796060937960673+CDS,intron-Distal5.258527.70706HepG2RPS3
chr73798857237988646+CDS,intron-Distal4.391057.06357HepG2SND1
chr73796060937960682+CDS,intron-Distal4.2034717.87929HepG2DDX3X
chr73796825937968398+intron-Distal3.661363.89405HepG2PTBP1
chr73796683237966935+intron-Distal3.620754.51091HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EPDR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EPDR1 is not available on ENCORE database.

  • 90 RBPs can affect the levels of EPDR1.  








The Knockdown/knockout RNA-Seq assay for EPDR1 is not available on ENCORE database.





90 RBPs can affect the gene expression of EPDR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EPDR1ENSG00000086289.71512.409601193.745500.341304.867204.10350HepG2ACO1
EPDR1ENSG00000086289.71972.810201199.385600.7179018.3680016.63360HepG2AKAP8L
EPDR1ENSG00000086289.73272.653201773.741800.8836014.1191012.47270HepG2ASCC1
EPDR1ENSG00000086289.72089.251601756.082200.250503.009802.29870HepG2AUH
EPDR1ENSG00000086289.71756.16370996.102800.818009.590308.04790HepG2BCLAF1
EPDR1ENSG00000086289.7651.867001111.69510-0.770109.653908.62240HepG2BOP1
EPDR1ENSG00000086289.71519.685101025.217400.567705.894604.14250HepG2BUD13
EPDR1ENSG00000086289.71940.457601386.005200.485406.631905.50480HepG2CALR
EPDR1ENSG00000086289.71345.903401914.67030-0.508503.629102.49770HepG2CCAR1
EPDR1ENSG00000086289.71831.029201193.523900.6173016.4498015.11670HepG2CKAP4
EPDR1ENSG00000086289.7769.281801227.51880-0.674203.721702.82810HepG2CNOT7
EPDR1ENSG00000086289.71909.081301126.842400.7605012.1482010.03020HepG2CPSF7
EPDR1ENSG00000086289.71644.548901281.212200.360104.430303.14270HepG2YBX3
EPDR1ENSG00000086289.73789.949801860.380601.0265041.8437039.94350HepG2CELF1
EPDR1ENSG00000086289.71786.705001283.024600.477707.233405.47560HepG2DDX1
EPDR1ENSG00000086289.71876.166101332.584300.493506.256404.88950HepG2DDX24
EPDR1ENSG00000086289.73181.483802053.510400.631507.414806.43560HepG2DDX3X
EPDR1ENSG00000086289.71514.486001127.204300.426002.655201.89460HepG2DDX55
EPDR1ENSG00000086289.71970.368801158.980600.765505.010203.70880HepG2DDX59
EPDR1ENSG00000086289.72313.390801764.026900.391002.739602.12510HepG2DDX6
EPDR1ENSG00000086289.7788.413801142.10080-0.534707.940606.90670HepG2DKC1
EPDR1ENSG00000086289.71508.667301246.929200.274803.646202.91670HepG2DNAJC2
EPDR1ENSG00000086289.71822.129301285.513600.503204.667103.49680HepG2EEF2
EPDR1ENSG00000086289.72303.683101695.783000.441903.865003.17110HepG2EIF2S1
EPDR1ENSG00000086289.71443.121401038.048000.475204.979303.43480HepG2EIF2S2
EPDR1ENSG00000086289.71289.593801874.03040-0.539204.501803.68920HepG2EIF4A3
EPDR1ENSG00000086289.72896.701601824.649000.666705.692704.72790HepG2EIF4B
EPDR1ENSG00000086289.71181.948501890.46490-0.677607.385706.08270HepG2EIF4G2
EPDR1ENSG00000086289.71149.57010932.790700.301402.418901.32830HepG2FAM120A
EPDR1ENSG00000086289.71878.973701382.028900.443102.885202.09880HepG2FIP1L1
EPDR1ENSG00000086289.7643.44200938.19570-0.544104.271802.72270HepG2FKBP4
EPDR1ENSG00000086289.71241.742201890.84570-0.606706.423005.39210HepG2FXR1
EPDR1ENSG00000086289.72300.199001754.022200.391002.942002.25740HepG2G3BP1
EPDR1ENSG00000086289.71436.21810929.020300.628406.548905.17180HepG2GEMIN5
EPDR1ENSG00000086289.72075.250501327.122600.644907.255305.59440HepG2GNB2L1
EPDR1ENSG00000086289.71536.491601157.013000.409102.933302.27610HepG2GPKOW
EPDR1ENSG00000086289.71541.840001139.708200.435907.077905.60470HepG2HDGF
EPDR1ENSG00000086289.72864.626601838.383600.639807.480106.07430HepG2HNRNPA2B1
EPDR1ENSG00000086289.7944.713401412.78090-0.580606.591305.55820HepG2HNRNPC
EPDR1ENSG00000086289.71340.274301822.15260-0.443109.240708.07800HepG2HNRNPL
EPDR1ENSG00000086289.71208.38790953.340500.341902.641501.71020HepG2HNRNPM
EPDR1ENSG00000086289.71057.221901290.71650-0.287902.307901.64490HepG2IGF2BP1
EPDR1ENSG00000086289.71691.139101091.256600.6319016.8156014.57620HepG2KIF1C
EPDR1ENSG00000086289.73187.611302021.947100.656606.282705.02170HepG2LARP4
EPDR1ENSG00000086289.7914.072201304.35530-0.513004.291602.19370HepG2LSM11
EPDR1ENSG00000086289.71232.918001891.50600-0.617506.353705.36820HepG2MAGOH
EPDR1ENSG00000086289.71265.22800939.037700.430003.921302.47430HepG2NAA15
EPDR1ENSG00000086289.72614.644901946.889200.425303.504902.79610HepG2NCBP2
EPDR1ENSG00000086289.71228.46710978.998300.327402.264201.58620HepG2NSUN2
EPDR1ENSG00000086289.7879.984401389.18810-0.6587013.0860011.47110HepG2PARN
EPDR1ENSG00000086289.72647.248501753.989900.5938015.2549014.01450HepG2PCBP1
EPDR1ENSG00000086289.72681.462001738.106200.625404.570803.26120HepG2PCBP2
EPDR1ENSG00000086289.71719.336501135.256000.598706.640804.02230HepG2PES1
EPDR1ENSG00000086289.71599.203201023.796300.6433013.4610011.94980HepG2PRPF4
EPDR1ENSG00000086289.71174.826001827.17200-0.637204.416402.89660HepG2PRPF6
EPDR1ENSG00000086289.72218.63690869.399501.3515026.8528024.75060HepG2PRPF8
EPDR1ENSG00000086289.71457.876002008.53260-0.462306.253005.25850HepG2PUM2
EPDR1ENSG00000086289.71637.838601215.912800.429707.510106.57790HepG2PUS1
EPDR1ENSG00000086289.71483.672801932.91280-0.381604.711103.92780HepG2QKI
EPDR1ENSG00000086289.72475.060701677.284800.561203.073602.33260HepG2RAVER1
EPDR1ENSG00000086289.72673.930801511.398800.8230019.3267017.41560HepG2RBM15
EPDR1ENSG00000086289.71060.285201685.23170-0.6685013.3016012.33530HepG2RBM22
EPDR1ENSG00000086289.72648.231501754.254800.594109.480108.28770HepG2RBM25
EPDR1ENSG00000086289.7975.633501411.94960-0.533305.807504.86950HepG2RPLP0
EPDR1ENSG00000086289.71315.924601015.425000.373903.257502.59750HepG2RPS19
EPDR1ENSG00000086289.71416.25600860.001500.719606.885705.70800HepG2RRP9
EPDR1ENSG00000086289.7981.639101249.83680-0.348504.601003.80470HepG2SAFB2
EPDR1ENSG00000086289.72112.200501365.261000.629504.574703.69740HepG2SF3A3
EPDR1ENSG00000086289.7783.485801092.92910-0.480204.033303.19680HepG2SF3B1
EPDR1ENSG00000086289.71103.992901457.53770-0.400806.064905.17090HepG2SMN1
EPDR1ENSG00000086289.74316.545601216.062601.8276020.6087018.54420HepG2SNRNP70
EPDR1ENSG00000086289.71228.553801939.51120-0.6587015.9213014.98570HepG2SRSF1
EPDR1ENSG00000086289.72372.173901577.905200.5881015.5926014.47310HepG2SRSF9
EPDR1ENSG00000086289.71391.85080922.812500.592804.296702.78430HepG2STAU1
EPDR1ENSG00000086289.72329.515201567.470400.571503.946102.49670HepG2SUB1
EPDR1ENSG00000086289.71864.092702126.16410-0.189802.209901.64290HepG2SUCLG1
EPDR1ENSG00000086289.72543.461101122.071701.1805019.4040017.89390HepG2SUPV3L1
EPDR1ENSG00000086289.72110.857401743.339100.275903.089502.50130HepG2TAF15
EPDR1ENSG00000086289.71253.67090752.059300.737107.375805.88860HepG2TFIP11
EPDR1ENSG00000086289.71912.623501601.858500.255702.151601.41220HepG2TIA1
EPDR1ENSG00000086289.7958.138801363.76900-0.509306.761406.04170HepG2TIAL1
EPDR1ENSG00000086289.71798.419201375.892300.386306.318605.52870HepG2TRIM56
EPDR1ENSG00000086289.72204.357401849.848200.252902.163701.39710HepG2TUFM
EPDR1ENSG00000086289.7483.09650662.81310-0.456303.075302.27620HepG2UCHL5
EPDR1ENSG00000086289.71678.935901210.777100.471508.863107.73240HepG2UPF1
EPDR1ENSG00000086289.7665.000501027.36130-0.627504.179302.93160HepG2UPF2
EPDR1ENSG00000086289.71471.838901244.514700.241902.308601.33740HepG2UTP18
EPDR1ENSG00000086289.7695.954001168.95880-0.7482014.7128013.49560HepG2UTP3
EPDR1ENSG00000086289.7868.023801010.35760-0.219101.920701.34640HepG2ZC3H8
EPDR1ENSG00000086289.72645.100601331.624000.9900049.9343048.35820HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EPDR1 is not available on ENCORE database.





1 RBPs can affect the splicing of EPDR1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEEPDR1ENSG00000086289.7chr7+3798844137988650379601623796081037989801379900140.086000.000830.03709includedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EPDR1 is not avaliable on ENCORE database.