ECSIT

General Information

Gene Name       : ECSIT
Gene ID             : ENSG00000130159.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ECSIT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ECSITENSG00000130159.133.6016.309.95ENCSR000AEF
HepG2ECSITENSG00000130159.1333.5317.2925.41ENCSR985KAT
K562ECSITENSG00000130159.1335.4029.5832.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ECSIT is not avaliable on ENCORE database.



Proteins bound to RNA
  • ECSIT RNA is bound by 5 proteins.  







eCLIP assay for ECSIT is not avaliable on ENCORE database.





5 proteins are bound to ECSIT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191161827211618329-3'-UTR,CDS,intron-Distal,intron-Proximal3.437704.13746HepG2PPIG
chr191162472811624810-3'-UTR,CDS,intron-Distal,intron-Proximal3.408983.80834K562METAP2
chr191162477311624817-3'-UTR,CDS,intron-Distal,intron-Proximal3.177447.62417K562YBX3
chr191162464511624688-CDS,intron-Distal,intron-Proximal3.661853.01531K562YBX3
chr191162412011624222-intron-Distal,intron-Proximal4.325385.75812K562PTBP1
chr191161839811618501-intron-Distal,intron-Proximal4.1296210.75421HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ECSIT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ECSIT is not available on ENCORE database.

  • 94 RBPs can affect the levels of ECSIT.  








The Knockdown/knockout RNA-Seq assay for ECSIT is not available on ENCORE database.





94 RBPs can affect the gene expression of ECSIT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ECSITENSG00000130159.9139.69400231.86220-0.731003.550802.34450HepG2AATF
ECSITENSG00000130159.9506.31920821.74180-0.698603.100502.54170HepG2AKAP1
ECSITENSG00000130159.9280.99130430.56000-0.615703.874602.64670HepG2AKAP8
ECSITENSG00000130159.9464.07640679.85900-0.550902.321201.59900HepG2ASCC1
ECSITENSG00000130159.9488.21660705.28050-0.530705.616004.69800HepG2AUH
ECSITENSG00000130159.9186.96470269.92110-0.529802.036901.51720HepG2BOP1
ECSITENSG00000130159.9162.38680262.73400-0.694203.749502.87120HepG2CALR
ECSITENSG00000130159.9610.55160423.413600.527905.932305.02560HepG2CKAP4
ECSITENSG00000130159.9154.95890306.60900-0.984505.156304.10800HepG2CNOT7
ECSITENSG00000130159.9142.30330237.51540-0.739103.160901.67510HepG2CSTF2T
ECSITENSG00000130159.9242.25750337.13090-0.476802.811602.16420HepG2CELF1
ECSITENSG00000130159.9468.96270362.464500.371502.860902.10820HepG2DAZAP1
ECSITENSG00000130159.9313.36070676.39580-1.110005.955705.07830HepG2DDX6
ECSITENSG00000130159.9584.09690405.215900.527404.383903.56780HepG2DKC1
ECSITENSG00000130159.9130.98770235.50740-0.846304.132502.76450HepG2AGO1
ECSITENSG00000130159.9192.24630281.09730-0.548102.693701.80130HepG2EIF3D
ECSITENSG00000130159.9355.98910699.44690-0.974404.305703.46010HepG2EIF4B
ECSITENSG00000130159.9687.78810342.574501.0054012.3446010.70280HepG2EIF4G2
ECSITENSG00000130159.9387.02270809.74860-1.0651020.7921019.40490HepG2ETF1
ECSITENSG00000130159.9162.99670251.28290-0.624503.547502.20830HepG2FAM120A
ECSITENSG00000130159.9277.70680518.80980-0.901605.382704.33920HepG2FIP1L1
ECSITENSG00000130159.999.51350248.24110-1.318804.842303.50410HepG2FTO
ECSITENSG00000130159.9438.09770602.70200-0.460203.235202.38960HepG2FUBP3
ECSITENSG00000130159.9267.76920672.28020-1.328108.060406.95660HepG2G3BP1
ECSITENSG00000130159.9238.70700333.13170-0.480902.785301.84900HepG2HNRNPA2B1
ECSITENSG00000130159.9378.51290257.986100.552903.073702.34790HepG2HNRNPC
ECSITENSG00000130159.9292.91860681.31610-1.217806.492805.45340HepG2HNRNPK
ECSITENSG00000130159.9444.95640330.167100.430403.513202.76120HepG2HNRNPL
ECSITENSG00000130159.9191.19920268.02630-0.487302.018301.47190HepG2HNRNPLL
ECSITENSG00000130159.9470.28180341.315500.462302.793002.06570HepG2IGF2BP1
ECSITENSG00000130159.9473.95680683.27110-0.527702.343001.71610HepG2IGF2BP2
ECSITENSG00000130159.9270.68600641.57110-1.245005.390104.04260HepG2IGF2BP3
ECSITENSG00000130159.9368.98880261.783400.495103.623102.79410HepG2ILF2
ECSITENSG00000130159.9436.85410725.23490-0.731303.480902.74320HepG2MAGOH
ECSITENSG00000130159.9134.97550294.17510-1.124005.005403.61870HepG2METAP2
ECSITENSG00000130159.9292.14190419.70280-0.522703.477002.57000HepG2MSI2
ECSITENSG00000130159.9454.68150746.33390-0.715003.412402.71250HepG2NCBP2
ECSITENSG00000130159.9345.66810664.37630-0.942604.872603.92510HepG2PABPC4
ECSITENSG00000130159.9510.28490691.97470-0.439402.982702.35610HepG2PCBP1
ECSITENSG00000130159.9365.77130228.583100.678104.264703.37040HepG2PPIL4
ECSITENSG00000130159.9349.81270704.04980-1.009109.642308.74260HepG2PTBP1
ECSITENSG00000130159.9453.58080343.108100.402602.355401.79900HepG2PUF60
ECSITENSG00000130159.9462.73560364.235500.345202.579602.00220HepG2PUM1
ECSITENSG00000130159.9332.49680431.41260-0.375702.577801.97760HepG2PUS1
ECSITENSG00000130159.9323.59800762.63190-1.2368010.873109.75410HepG2QKI
ECSITENSG00000130159.9367.39260477.95850-0.379602.101601.34070HepG2RBM15
ECSITENSG00000130159.9522.95960676.80160-0.372002.654902.14480HepG2RBM22
ECSITENSG00000130159.9249.71720692.08880-1.4707015.8336014.29060HepG2RBM25
ECSITENSG00000130159.9352.29630783.58990-1.1533011.2084010.25840HepG2NELFE
ECSITENSG00000130159.9501.32590729.71660-0.541603.469302.78880HepG2RECQL
ECSITENSG00000130159.9179.18950273.54670-0.610303.344402.67670HepG2RPS19
ECSITENSG00000130159.9438.90540228.233000.9433011.6422010.46150HepG2SAFB2
ECSITENSG00000130159.9448.87650290.114500.629603.555802.08320HepG2SART3
ECSITENSG00000130159.9171.87490274.50450-0.675503.736102.64160HepG2SERBP1
ECSITENSG00000130159.9583.30570439.279000.409002.088501.50140HepG2SF3A3
ECSITENSG00000130159.9450.84350733.11490-0.701405.975205.16280HepG2SF3B4
ECSITENSG00000130159.9532.81930329.009800.695407.241006.18990HepG2SLBP
ECSITENSG00000130159.9137.63410295.16960-1.100705.861704.71630HepG2SNRNP70
ECSITENSG00000130159.9596.61450764.42540-0.357603.263702.73370HepG2SRFBP1
ECSITENSG00000130159.9320.10700765.16900-1.2572013.2063012.33890HepG2SRSF1
ECSITENSG00000130159.9334.54930622.46770-0.895808.120607.26410HepG2SRSF9
ECSITENSG00000130159.9251.16190687.64120-1.4530010.918409.92110HepG2TAF15
ECSITENSG00000130159.9423.28260631.97860-0.578303.338102.42370HepG2TIA1
ECSITENSG00000130159.9319.16620251.249400.345101.828301.35050HepG2TRIM56
ECSITENSG00000130159.9312.60140443.70110-0.505303.039502.38250HepG2U2AF1
ECSITENSG00000130159.9289.68500389.57370-0.427402.947802.23080HepG2UPF1
ECSITENSG00000130159.9506.53690376.117600.429403.345802.69900HepG2UTP3
ECSITENSG00000130159.9201.54460364.49430-0.854808.345907.28440HepG2ZC3H8
ECSITENSG00000130159.91008.21840778.536800.372902.863402.19880K562AKAP8L
ECSITENSG00000130159.91154.022901528.75940-0.405704.932403.62120K562CELF1
ECSITENSG00000130159.9568.80160444.568700.355402.588001.31150K562DDX27
ECSITENSG00000130159.9689.79890497.999600.469903.941202.66730K562DDX3X
ECSITENSG00000130159.9338.00800487.73080-0.529003.435901.92890K562DNAJC21
ECSITENSG00000130159.9769.18860452.036800.766804.917503.49150K562EIF3D
ECSITENSG00000130159.9323.16610199.402900.696504.960103.91060K562EIF3G
ECSITENSG00000130159.9796.54990520.275100.614406.047304.84330K562EIF4A3
ECSITENSG00000130159.9792.10730553.088100.518104.413503.32510K562FIP1L1
ECSITENSG00000130159.9222.80940328.18030-0.558702.919102.04010K562FMR1
ECSITENSG00000130159.9192.51300278.18030-0.531102.278401.45350K562FTO
ECSITENSG00000130159.9706.22670541.062300.384203.194602.55150K562FXR1
ECSITENSG00000130159.934.36110168.92730-2.2976011.362109.72930K562G3BP2
ECSITENSG00000130159.9542.92880701.32520-0.369303.029601.83570K562GLRX3
ECSITENSG00000130159.91512.061101096.123900.464004.711603.72560K562GRSF1
ECSITENSG00000130159.9541.04530930.26410-0.781903.171701.46860K562HNRNPAB
ECSITENSG00000130159.9908.02170648.532400.485404.267003.54200K562HNRNPC
ECSITENSG00000130159.9840.71050454.941400.885807.530905.87270K562HNRNPM
ECSITENSG00000130159.9948.59070749.844000.339102.240401.52120K562HSPD1
ECSITENSG00000130159.9555.70910308.195000.850404.532103.08760K562IGF2BP2
ECSITENSG00000130159.9604.53410323.617100.9014010.858809.12510K562MAGOH
ECSITENSG00000130159.9555.63030322.917500.782907.564005.94310K562MATR3
ECSITENSG00000130159.9420.38680300.545800.484002.894401.99740K562METAP2
ECSITENSG00000130159.9869.493001325.02490-0.607807.275405.48390K562MSI2
ECSITENSG00000130159.9511.78630955.18640-0.900203.330601.95480K562PABPC1
ECSITENSG00000130159.9426.55970780.65850-0.871908.644207.17720K562PCBP3
ECSITENSG00000130159.9361.80200598.79770-0.726907.557206.25820K562POLR2G
ECSITENSG00000130159.9886.49580627.891100.497504.204303.16420K562PPIG
ECSITENSG00000130159.9605.87420411.018200.559703.204502.39650K562PRPF8
ECSITENSG00000130159.9634.08370314.435501.0118014.2483012.80510K562PTBP1
ECSITENSG00000130159.91041.596801442.87960-0.470206.049004.41590K562PUM1
ECSITENSG00000130159.91149.376001413.52000-0.298403.196202.16530K562PUM2
ECSITENSG00000130159.9247.06140175.473900.493502.367001.57830K562SF3B4
ECSITENSG00000130159.9423.58000308.283500.458302.730002.02710K562SRSF1
ECSITENSG00000130159.9448.21820291.229400.621904.546503.14260K562SRSF5
ECSITENSG00000130159.970.04600165.80690-1.243104.866802.70960K562TAF15
ECSITENSG00000130159.9460.69520311.934400.562503.738402.91090K562TARDBP
ECSITENSG00000130159.9577.14330300.913900.9395011.163209.39860K562TIA1
ECSITENSG00000130159.9424.94480559.30040-0.396302.176801.35670K562TIAL1
ECSITENSG00000130159.9510.76450295.448600.789706.483104.63990K562TRA2A
ECSITENSG00000130159.975.98280163.54220-1.105903.981702.62010K562U2AF1
ECSITENSG00000130159.990.56710168.97000-0.899704.225303.23720K562U2AF2
ECSITENSG00000130159.9644.93550868.70930-0.429704.992504.05800K562UPF1
ECSITENSG00000130159.9910.097701161.25290-0.351602.791301.92390K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ECSIT is not available on ENCORE database.





12 RBPs can affect the splicing of ECSIT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEECSITENSG00000130159.9chr19-1163645411636552116298891163000811639876116399450.077000.002930.07075includedK562AKAP8L
SEECSITENSG00000130159.9chr19-116395591163967211629889116300081163987611639952-0.130000.000270.01111excludedK562AKAP8L
SEECSITENSG00000130159.9chr19-1162143111621475116188051161886311623870116239830.103000.000440.01364includedHepG2HNRNPK
SEECSITENSG00000130159.9chr19-116298891163000811618805116188631163987611639952-0.134000.001320.01545excludedK562AQR
SEECSITENSG00000130159.9chr19-1162143111621475116188051161886311623870116239830.161000.000100.05924includedHepG2FAM120A
SEECSITENSG00000130159.9chr19-1162143111621475116188051161886311623870116239830.138000.001320.09987includedHepG2SUPV3L1
SEECSITENSG00000130159.9chr19-116395591163967211629889116300081163987611639952-0.116000.002630.05757excludedK562AGGF1
A3SSECSITENSG00000130159.9chr19-116185161161866511618516116185441161880511618863-0.127000.000090.01711shorterK562PRPF8
RIECSITENSG00000130159.9chr19-1161851611618863116185161161866511618805116188630.220000.001090.01613includedHepG2PRPF8
RIECSITENSG00000130159.9chr19-1161851611618863116185161161866511618805116188630.144000.003380.03935includedK562PRPF8
RIECSITENSG00000130159.9chr19-116185161161886311618516116185441161880511618863-0.161000.000070.00156excludedK562PRPF8
RIECSITENSG00000130159.9chr19-1161851611618863116185161161866511618805116188630.082000.004190.07730includedHepG2SRSF1
RIECSITENSG00000130159.9chr19-1161851611618863116185161161866511618805116188630.107000.000190.00305includedHepG2TAF15
RIECSITENSG00000130159.9chr19-1161851611618863116185161161866511618805116188630.059000.006800.06366includedHepG2NCBP2
RIECSITENSG00000130159.9chr19-1161851611618863116185161161866511618805116188630.089000.002880.02937includedHepG2RBM22
RIECSITENSG00000130159.9chr19-1161851611618863116185161161866511618805116188630.092000.000440.01411includedHepG2PTBP1
RIECSITENSG00000130159.9chr19-1161851611618863116185161161866511618805116188630.176000.000000.00000includedK562AQR
MXEECSITENSG00000130159.9chr19-1162988911630008116395591163967211624618116250361163987611639952-0.084000.001150.045522includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ECSIT is not avaliable on ENCORE database.