CTCFL

General Information

Gene Name       : CTCFL
Gene ID             : ENSG00000124092.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTCFL)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTCFLENSG00000124092.120.000.010.01ENCSR000AEF
HepG2CTCFLENSG00000124092.120.000.000.00ENCSR985KAT
K562CTCFLENSG00000124092.1298.64119.30108.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTCFL is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTCFL RNA is bound by 21 proteins.  







eCLIP assay for CTCFL is not avaliable on ENCORE database.





21 proteins are bound to CTCFL RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr205607322356073253-3'-UTR,intron-Distal3.221359.28350K562FAM120A
chr205607249156072518-3'-UTR,intron-Distal3.8248222.18818K562FAM120A
chr205607229556072374-3'-UTR,intron-Distal4.5376620.36681K562FAM120A
chr205607242256072437-3'-UTR,intron-Distal5.6060041.30220K562FAM120A
chr205607320156073248-3'-UTR,intron-Distal3.659714.86893HepG2SUB1
chr205608966956089796-3'-UTR,CDS,intron-Distal3.096385.72406K562IGF2BP2
chr205607316956073217-3'-UTR,intron-Distal3.5763118.64722K562FAM120A
chr205607853056078584-3'-UTR,CDS,intron-Distal3.3957911.11566K562ZNF622
chr205607237656072395-3'-UTR,intron-Distal4.8063124.29488K562FAM120A
chr205608974356089799-3'-UTR,CDS,intron-Distal,intron-Proximal5.005106.28042K562PUM1
chr205607260456072715-3'-UTR,intron-Distal4.55500400.00000K562FAM120A
chr205607317756073315-3'-UTR,intron-Distal8.2070495.86829K562LIN28B
chr205607849156078497-3'-UTR,CDS,intron-Distal,intron-Proximal3.943969.17402K562UCHL5
chr205607229756072350-3'-UTR,intron-Distal3.491677.31176K562UPF1
chr205608374056083785-3'-UTR,CDS,intron-Distal,intron-Proximal4.099993.35417K562METAP2
chr205607257256072604-3'-UTR,intron-Distal3.7613217.58186K562FAM120A
chr205607326556073321-3'-UTR,intron-Distal3.166776.47235K562PABPC4
chr205607858456078647-3'-UTR,CDS,intron-Distal3.188098.89466K562ZNF622
chr205608965056089712-3'-UTR,CDS,intron-Distal3.331788.15265K562UCHL5
chr205607243756072473-3'-UTR,intron-Distal4.9747750.72221K562FAM120A
chr205607247356072491-3'-UTR,intron-Distal4.1642724.97629K562FAM120A
chr205608366056083723-3'-UTR,CDS,intron-Distal,intron-Proximal4.142666.99270K562IGF2BP1
chr205607852556078580-3'-UTR,CDS,intron-Distal3.6370312.78728K562UCHL5
chr205607239556072422-3'-UTR,intron-Distal5.0410528.90767K562FAM120A
chr205607251856072559-3'-UTR,intron-Distal3.7724033.22645K562FAM120A
chr205607314256073163-3'-UTR,intron-Distal3.211664.61367K562UPF1
chr205607849756078525-3'-UTR,CDS,intron-Distal4.0818113.95379K562UCHL5
chr205607345856073511-3'-UTR,intron-Distal,intron-Proximal3.443065.76901HepG2SUB1
chr205607272756072743-3'-UTR,intron-Distal3.222196.13685K562UPF1
chr205608964756089685-3'-UTR,CDS,intron-Distal,intron-Proximal3.331034.15299K562GRWD1
chr205607351156073560-3'-UTR,intron-Distal,intron-Proximal3.737774.43122HepG2SUB1
chr205607334556073401-3'-UTR,intron-Distal4.8826916.29534K562LIN28B
chr205608372356083813-3'-UTR,CDS,intron-Distal,intron-Proximal4.6235811.65697K562IGF2BP1
chr205607284956072893-3'-UTR,intron-Distal3.1150610.31287K562FAM120A
chr205608768956087758-5'-UTR,CDS,intron-Distal3.408877.94302K562YBX3
chr205610011356100202-5'-UTR,intron-Distal,intron-Proximal4.280177.06750K562FMR1
chr205610039656100468-5'-UTR,intron-Distal3.846533.17740K562CSTF2T
chr205610008356100190-5'-UTR,intron-Distal,intron-Proximal3.741245.20715K562FXR2
chr205609829756098335-5'-UTR,CDS,intron-Distal,intron-Proximal3.262116.89640K562UCHL5
chr205610011956100193-5'-UTR,intron-Distal,intron-Proximal4.598329.84768K562DDX3X
chr205608779756087808-5'-UTR,CDS,intron-Distal3.088249.49523K562YBX3
chr205609822156098297-5'-UTR,CDS,intron-Distal3.0369113.05244K562UCHL5
chr205609983156099935-5'-UTR,intron-Distal,intron-Proximal3.632064.13833K562GTF2F1
chr205610008356100119-5'-UTR,intron-Distal,intron-Proximal3.691703.74019K562DDX3X
chr205609389856093905-CDS,intron-Distal3.6288415.17681K562YBX3
chr205609386056093916-CDS,intron-Distal3.129445.14064K562METAP2
chr205609885756098982-CDS,intron-Distal3.2108126.46638K562ZNF622
chr205609871756098732-CDS,intron-Distal,intron-Proximal3.679264.41873K562ZNF800
chr205609426256094310-CDS,intron-Distal,intron-Proximal3.3155710.23829K562ZNF800
chr205609906756099218-CDS,intron-Distal3.1284010.80956K562PUM1
chr205609881956098945-CDS,intron-Distal3.7085625.07967K562UCHL5
chr205609428156094298-CDS,intron-Distal4.3190628.72432K562YBX3
chr205609076956090809-CDS,intron-Distal,intron-Proximal3.4321010.15048K562YBX3
chr205609907556099106-CDS,intron-Distal3.7696412.07018K562UCHL5
chr205609386356093898-CDS,intron-Distal3.2618216.54981K562YBX3
chr205609907656099141-CDS,intron-Distal3.1735827.01621K562ZNF622
chr205609916856099243-CDS,intron-Distal3.079385.56139K562DDX3X
chr205609391256093929-CDS,intron-Distal3.515826.98097K562YBX3
chr205609891556098973-CDS,intron-Distal4.045443.66349K562LIN28B
chr205607364656073716-CDS,intron-Distal3.0394810.57991K562ZNF800
chr205609393856093947-CDS,intron-Distal4.2012726.64834K562YBX3
chr205609921156099253-CDS,intron-Distal3.2971517.70137K562YBX3
chr205609871856098811-CDS,intron-Distal,intron-Proximal3.1860318.83395K562UCHL5
chr205609426556094281-CDS,intron-Distal4.6455236.49775K562YBX3
chr205607364956073722-CDS,intron-Distal3.098215.30307K562PUM1
chr205609916556099211-CDS,intron-Distal4.304684.49723K562ZNF800
chr205609429856094314-CDS,intron-Distal4.9513525.67095K562YBX3
chr205609388156093917-CDS,intron-Distal3.685406.95618K562PUM1
chr205607371156073757-CDS,intron-Distal3.4772514.97033K562UCHL5
chr205609898256099065-CDS,intron-Distal3.5041121.12943K562ZNF622
chr205609432056094379-CDS,intron-Distal3.1332123.54108K562YBX3
chr205609392956093938-CDS,intron-Distal4.0497016.38329K562YBX3
chr205609899656099074-CDS,intron-Distal3.770577.93716K562FXR2
chr205609426256094265-CDS,intron-Distal,intron-Proximal4.0696427.23407K562YBX3
chr205609896856099069-CDS,intron-Distal3.6242624.55730K562UCHL5
chr205609907456099116-CDS,intron-Distal4.873114.27132K562FXR2
chr205609072056090770-CDS,intron-Distal,intron-Proximal4.9614110.60410K562AQR
chr205609910656099139-CDS,intron-Distal3.5207911.71363K562UCHL5
chr205609437956094402-CDS,intron-Distal4.6206214.02980K562YBX3
chr205609913956099210-CDS,intron-Distal3.4167411.92804K562UCHL5
chr205609391756093948-CDS,intron-Distal,intron-Proximal3.473428.71294K562PUM1
chr205609812456098130-CDS,intron-Distal4.281584.48692K562YBX3
chr205609918356099211-CDS,intron-Distal3.457297.92845K562YBX3
chr205609897756099065-CDS,intron-Distal3.6425310.51083K562PUM1
chr205609381256093848-CDS,intron-Distal,intron-Proximal3.094455.77418K562UCHL5
chr205608956856089623-intron-Distal,intron-Proximal4.721835.17615K562AQR
chr205609997956100084-intron-Distal,intron-Proximal3.312115.81258K562AQR
chr205607836556078472-intron-Distal,intron-Proximal3.127144.48980K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTCFL is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTCFL is not available on ENCORE database.

  • 75 RBPs can affect the levels of CTCFL.  








The Knockdown/knockout RNA-Seq assay for CTCFL is not available on ENCORE database.





75 RBPs can affect the gene expression of CTCFL :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTCFLENSG00000124092.80.000009.97080-99999.999992.829801.84200HepG2CCAR1
CTCFLENSG00000124092.828.291001.876603.914105.504804.68490HepG2EIF2S1
CTCFLENSG00000124092.80.0000010.51840-99999.999993.140402.25260HepG2LARP4
CTCFLENSG00000124092.810.021800.0000099999.999902.960602.21350HepG2TARDBP
CTCFLENSG00000124092.829.573801.542204.261207.109706.33810HepG2ZNF622
CTCFLENSG00000124092.811307.337308217.374700.460405.778204.00850K562ABCF1
CTCFLENSG00000124092.87608.658405354.301800.5068012.499109.36720K562AKAP1
CTCFLENSG00000124092.813303.8753010718.430900.311703.300402.58530K562AKAP8L
CTCFLENSG00000124092.86289.623605231.902000.265504.334701.69040K562ASCC1
CTCFLENSG00000124092.814106.9214011246.154800.326905.566304.21790K562ATP5C1
CTCFLENSG00000124092.86444.092105067.937600.346506.573004.42300K562BCCIP
CTCFLENSG00000124092.86163.002304897.044400.331607.565905.95260K562BCLAF1
CTCFLENSG00000124092.83985.161105390.59730-0.435803.857202.82680K562BOP1
CTCFLENSG00000124092.88118.502005723.764700.504105.414803.35610K562BUD13
CTCFLENSG00000124092.87866.186606299.005400.320403.155201.77840K562CIRBP
CTCFLENSG00000124092.86913.552105731.538400.270403.014302.19630K562CPSF6
CTCFLENSG00000124092.84834.531203715.136800.379906.543904.81460K562CSTF2
CTCFLENSG00000124092.821344.8274013542.785000.6563017.3989015.14720K562CELF1
CTCFLENSG00000124092.87702.492005748.340700.422105.716703.15940K562DDX24
CTCFLENSG00000124092.85529.040204294.474500.364407.514805.34580K562DDX27
CTCFLENSG00000124092.86738.074405425.139400.312603.634802.42110K562DDX3X
CTCFLENSG00000124092.814004.6225011533.996700.279904.654903.47290K562DKC1
CTCFLENSG00000124092.86823.998105958.849500.195502.615201.44770K562EIF2S1
CTCFLENSG00000124092.83153.316905104.14270-0.6948018.5354015.51760K562EIF4B
CTCFLENSG00000124092.89651.5789011013.12900-0.190402.770201.83230K562EIF4G2
CTCFLENSG00000124092.86186.133504947.415400.322304.901703.08980K562EWSR1
CTCFLENSG00000124092.85546.091004465.611900.312503.266701.52360K562FASTKD2
CTCFLENSG00000124092.87149.271505906.914100.275302.408101.61700K562FIP1L1
CTCFLENSG00000124092.86619.888305015.885100.400203.658902.33580K562FKBP4
CTCFLENSG00000124092.86183.603104943.424300.322802.541801.66850K562FTO
CTCFLENSG00000124092.86540.594205347.056800.290603.725301.61840K562FUBP3
CTCFLENSG00000124092.84775.111403690.177600.371704.917803.07540K562FUS
CTCFLENSG00000124092.85057.497105894.32080-0.220902.930802.31050K562FXR1
CTCFLENSG00000124092.87780.303205618.973000.469406.956204.55470K562G3BP1
CTCFLENSG00000124092.87080.524505510.781800.361502.266001.63420K562G3BP2
CTCFLENSG00000124092.89998.887606413.379500.6406018.4482015.99020K562GLRX3
CTCFLENSG00000124092.89487.188307222.238700.393405.176104.13780K562GRSF1
CTCFLENSG00000124092.87896.771006354.435800.313403.684002.44230K562HNRNPA1
CTCFLENSG00000124092.83926.366605774.87840-0.556609.945308.87030K562HNRNPC
CTCFLENSG00000124092.87357.120705869.984900.325702.770001.53390K562HNRNPK
CTCFLENSG00000124092.88220.455305877.046300.484004.374802.96110K562IGF2BP2
CTCFLENSG00000124092.87354.928805977.830600.299002.833501.62460K562IGF2BP3
CTCFLENSG00000124092.86300.950904672.885100.431203.167402.16020K562KRR1
CTCFLENSG00000124092.87489.386106164.237900.280802.948701.99290K562MATR3
CTCFLENSG00000124092.86404.119105341.391900.261702.586701.74470K562METAP2
CTCFLENSG00000124092.89462.746606742.801200.4888016.1377014.39970K562MTPAP
CTCFLENSG00000124092.810043.780307492.032100.4228021.6914019.89080K562NSUN2
CTCFLENSG00000124092.87462.197006037.652800.305503.651202.09350K562PCBP1
CTCFLENSG00000124092.88182.400106705.503000.287102.432001.66650K562PPIG
CTCFLENSG00000124092.83459.712604405.75440-0.348703.311002.48900K562PRPF8
CTCFLENSG00000124092.89127.3704012015.98180-0.396705.321504.19300K562PUF60
CTCFLENSG00000124092.87975.379306166.207900.371105.842603.13840K562QKI
CTCFLENSG00000124092.812867.0419010357.115500.313005.110804.32760K562RBM15
CTCFLENSG00000124092.85717.820104110.928200.4759013.8373010.73080K562RPS10
CTCFLENSG00000124092.85354.622007366.18370-0.460105.196403.76260K562RPS3
CTCFLENSG00000124092.86866.575204504.319200.608205.447603.58540K562RRP9
CTCFLENSG00000124092.85458.461403769.763800.533903.711901.88270K562SERBP1
CTCFLENSG00000124092.88983.211807392.464200.281104.503403.48380K562SF3A3
CTCFLENSG00000124092.86454.240205204.723600.310302.217501.35630K562SF3B1
CTCFLENSG00000124092.84672.611103487.050400.422104.467602.81720K562SLBP
CTCFLENSG00000124092.85615.458604276.123600.393005.777503.23650K562SLTM
CTCFLENSG00000124092.84970.591403832.957200.374904.287802.19640K562SND1
CTCFLENSG00000124092.88730.311507573.715700.204904.149803.02690K562SRPK2
CTCFLENSG00000124092.88005.386105883.031700.444307.154406.02560K562SRSF1
CTCFLENSG00000124092.85944.786707111.21890-0.258502.672901.64370K562SRSF4
CTCFLENSG00000124092.811126.919607088.622600.650409.211406.86470K562STAU1
CTCFLENSG00000124092.85157.179103888.288200.407303.534701.63430K562TFIP11
CTCFLENSG00000124092.88621.984306909.935600.319202.761801.38180K562TRIP6
CTCFLENSG00000124092.810192.428008053.343600.339706.625704.63040K562TROVE2
CTCFLENSG00000124092.86764.336605341.365600.340602.532901.49270K562U2AF1
CTCFLENSG00000124092.86467.439905516.590100.229302.377801.63320K562U2AF2
CTCFLENSG00000124092.85958.965404514.391800.400403.907202.67670K562UCHL5
CTCFLENSG00000124092.89298.509506797.406800.451907.015505.58000K562WDR3
CTCFLENSG00000124092.89422.631807068.359500.4147013.3800011.69080K562WDR43
CTCFLENSG00000124092.811564.498109261.969300.320203.876602.33930K562WRN
CTCFLENSG00000124092.811332.270208803.044600.364304.338003.21840K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTCFL is not available on ENCORE database.





4 RBPs can affect the splicing of CTCFL :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECTCFLENSG00000124092.8chr20-560896475608979756087647560878085609076956090890-0.075000.000020.00084excludedK562SF3B4
SECTCFLENSG00000124092.8chr20-560896475608979756087647560878085609076956090890-0.090000.000000.00008excludedK562U2AF1
SECTCFLENSG00000124092.8chr20-560896475608979756087647560878085609076956090890-0.081000.000000.00000excludedK562HNRNPU
MXECTCFLENSG00000124092.8chr20-56089647560897975609076956090890560876475608780856093813560939470.145000.003540.043001includedK562DROSHA
MXECTCFLENSG00000124092.8chr20-56083661560837605608764756087808560784915607865756090769560908900.061000.000000.000041includedK562HNRNPU
MXECTCFLENSG00000124092.8chr20-56083661560837345608764756087808560784915607865756090769560908900.056000.000000.000071includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTCFL is not avaliable on ENCORE database.