CNOT11

General Information

Gene Name       : CNOT11
Gene ID             : ENSG00000158435.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNOT11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNOT11ENSG00000158435.785.1966.1475.66ENCSR000AEF
HepG2CNOT11ENSG00000158435.798.92141.70120.31ENCSR985KAT
K562CNOT11ENSG00000158435.782.58109.7596.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNOT11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNOT11 RNA is bound by 20 proteins.  







eCLIP assay for CNOT11 is not avaliable on ENCORE database.





20 proteins are bound to CNOT11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2101885670101885725+3'-UTR,CDS,intron-Proximal4.483745.38313K562U2AF1
chr2101886551101886644+3'-UTR3.423878.40205K562PABPC4
chr2101885611101885724+3'-UTR,CDS,intron-Proximal3.3351517.53975HepG2EFTUD2
chr2101885588101885673+3'-UTR,CDS,intron-Proximal6.3374213.53264HepG2PRPF8
chr2101885734101885789+3'-UTR,CDS3.807426.67890K562PUM2
chr2101886687101886726+3'-UTR4.463534.27202K562PABPC4
chr2101885872101885935+3'-UTR4.147833.08128K562IGF2BP1
chr2101886045101886120+3'-UTR4.9530511.81456HepG2SUB1
chr2101885665101885729+3'-UTR,CDS,intron-Proximal3.053473.74832K562U2AF2
chr2101869401101869479+5'-UTR,CDS3.127778.23377K562DDX3X
chr2101869368101869461+5'-UTR,CDS4.2530226.47664HepG2DDX3X
chr2101869355101869484+5'-UTR,CDS3.0288410.41121HepG2NCBP2
chr2101883140101883213+CDS3.115364.70577HepG2G3BP1
chr2101869559101869631+CDS4.128127.55572HepG2RPS3
chr2101881312101881354+CDS3.333615.56979K562YBX3
chr2101869676101869761+CDS3.408376.18351K562YBX3
chr2101869633101869696+CDS4.294944.31023HepG2LIN28B
chr2101881260101881358+CDS,intron-Proximal3.640613.81059HepG2AQR
chr2101869502101869613+CDS3.510273.47634HepG2FTO
chr2101869644101869699+CDS5.488149.55253K562LIN28B
chr2101869605101869653+CDS3.3988612.27709HepG2DDX3X
chr2101869561101869605+CDS3.1639911.70928HepG2DDX3X
chr2101883158101883255+CDS3.467353.08972HepG2PCBP2
chr2101869461101869496+CDS3.9376915.15746HepG2DDX3X
chr2101869913101869980+CDS,intron-Proximal3.400335.13777HepG2PRPF8
chr2101881584101881631+intron-Distal,intron-Proximal3.799314.16174HepG2PRPF8
chr2101872832101872917+intron-Distal3.694386.02098HepG2PRPF4
chr2101878783101878833+intron-Distal3.711883.38675HepG2ILF3
chr2101881576101881627+intron-Distal,intron-Proximal3.171693.42293HepG2HNRNPC
chr2101883078101883134+intron-Proximal4.138505.97994K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNOT11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNOT11 is not available on ENCORE database.

  • 81 RBPs can affect the levels of CNOT11.  








The Knockdown/knockout RNA-Seq assay for CNOT11 is not available on ENCORE database.





81 RBPs can affect the gene expression of CNOT11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNOT11ENSG00000158435.32188.106402787.72700-0.349406.754505.88930HepG2ACO1
CNOT11ENSG00000158435.32931.917804365.68220-0.574405.589104.86420HepG2AKAP1
CNOT11ENSG00000158435.33337.558302460.847900.439505.036804.26050HepG2BOP1
CNOT11ENSG00000158435.32436.742502787.04840-0.193802.714702.05430HepG2CKAP4
CNOT11ENSG00000158435.32745.363503742.00240-0.446808.993607.95840HepG2CELF1
CNOT11ENSG00000158435.33562.950004023.53130-0.175402.536201.82130HepG2DAZAP1
CNOT11ENSG00000158435.32844.028104182.05380-0.556306.116305.22080HepG2DDX3X
CNOT11ENSG00000158435.31666.319902309.94330-0.471203.596202.72990HepG2DDX55
CNOT11ENSG00000158435.34752.309003592.328300.403603.116502.46420HepG2DDX6
CNOT11ENSG00000158435.32754.637302320.155900.247502.829802.12100HepG2DNAJC21
CNOT11ENSG00000158435.31818.518002299.77140-0.338706.554005.60930HepG2DNAJC2
CNOT11ENSG00000158435.32653.828303453.53370-0.380003.138102.50820HepG2EIF2S1
CNOT11ENSG00000158435.31841.624002772.53900-0.590209.561507.57050HepG2EIF2S2
CNOT11ENSG00000158435.33015.090403816.62900-0.340102.250301.67220HepG2EIF4A3
CNOT11ENSG00000158435.32621.637503715.89350-0.503203.573102.79570HepG2EIF4B
CNOT11ENSG00000158435.34558.788703802.516100.261602.045601.33760HepG2EIF4G2
CNOT11ENSG00000158435.31667.649804163.41030-1.3199070.3602068.11560HepG2ETF1
CNOT11ENSG00000158435.31487.138701823.70720-0.294302.759501.59530HepG2FAM120A
CNOT11ENSG00000158435.32525.262303690.34270-0.547305.068704.05650HepG2FIP1L1
CNOT11ENSG00000158435.31308.066301922.71280-0.555705.077203.39470HepG2FKBP4
CNOT11ENSG00000158435.32732.593003850.61190-0.494805.074604.15840HepG2FXR1
CNOT11ENSG00000158435.32188.179603572.11600-0.707008.650107.50950HepG2G3BP1
CNOT11ENSG00000158435.31416.655901816.91600-0.359002.906901.98570HepG2GEMIN5
CNOT11ENSG00000158435.31769.039402356.09380-0.413403.199802.10090HepG2GNB2L1
CNOT11ENSG00000158435.34393.911703665.117000.261505.586104.65760HepG2HNRNPL
CNOT11ENSG00000158435.32012.106202546.32690-0.339703.440002.38740HepG2HNRNPM
CNOT11ENSG00000158435.32237.860703407.39640-0.606502.387901.48240HepG2IGF2BP3
CNOT11ENSG00000158435.32547.436303652.10980-0.519704.053802.82110HepG2KHSRP
CNOT11ENSG00000158435.31590.750502307.98970-0.536906.409704.71000HepG2LARP7
CNOT11ENSG00000158435.32504.019303873.54790-0.629406.776105.82260HepG2MATR3
CNOT11ENSG00000158435.32072.626202986.95850-0.527207.542406.27010HepG2MSI2
CNOT11ENSG00000158435.31850.635803964.81900-1.0992020.0986018.49460HepG2NCBP2
CNOT11ENSG00000158435.32686.541002086.953100.364303.582201.96520HepG2NIP7
CNOT11ENSG00000158435.32892.084802167.039800.416304.350803.41860HepG2NSUN2
CNOT11ENSG00000158435.32350.187403531.05550-0.587306.521405.42510HepG2PABPC4
CNOT11ENSG00000158435.31659.458002561.90690-0.6265016.0838014.33850HepG2PARN
CNOT11ENSG00000158435.32370.266203758.00630-0.6649021.3606019.93160HepG2PCBP1
CNOT11ENSG00000158435.32435.981803823.95900-0.6506019.1477017.95260HepG2PTBP1
CNOT11ENSG00000158435.32955.337404042.96210-0.4521014.8291013.68360HepG2PUM1
CNOT11ENSG00000158435.32620.533704040.00100-0.6245013.1638011.76670HepG2PUM2
CNOT11ENSG00000158435.32346.902002839.47010-0.274904.509403.76020HepG2PUS1
CNOT11ENSG00000158435.35206.296904145.466300.328604.518303.45520HepG2RBM15
CNOT11ENSG00000158435.32807.571403479.87350-0.309704.434903.81910HepG2RBM22
CNOT11ENSG00000158435.32124.067702783.01080-0.389803.115502.05970HepG2RBM27
CNOT11ENSG00000158435.33021.741604255.66020-0.4940012.5808011.58230HepG2NELFE
CNOT11ENSG00000158435.32947.993103963.64000-0.427109.727208.67620HepG2RECQL
CNOT11ENSG00000158435.34132.552702436.898000.761906.476505.07520HepG2RPS10
CNOT11ENSG00000158435.31535.365501985.56750-0.371003.806403.09600HepG2RPS19
CNOT11ENSG00000158435.32021.913902566.76160-0.344202.638701.85530HepG2RPS2
CNOT11ENSG00000158435.31198.714401762.84930-0.556404.712803.71850HepG2RRP9
CNOT11ENSG00000158435.32631.281001992.887000.400803.880602.76580HepG2SERBP1
CNOT11ENSG00000158435.33564.654902418.978400.559307.710706.58450HepG2SF3B1
CNOT11ENSG00000158435.33082.570803981.15060-0.369107.429606.53720HepG2SF3B4
CNOT11ENSG00000158435.32164.521702687.93160-0.312406.430205.51480HepG2SMN1
CNOT11ENSG00000158435.33493.245404155.49370-0.250504.130903.58180HepG2SRSF1
CNOT11ENSG00000158435.31708.244302602.90150-0.607605.367503.93520HepG2SRSF3
CNOT11ENSG00000158435.32932.801303760.40860-0.358606.924305.99660HepG2SRSF5
CNOT11ENSG00000158435.32101.195903380.74510-0.6861023.6143022.29580HepG2SRSF9
CNOT11ENSG00000158435.33145.625104276.60750-0.4431012.9227011.74330HepG2SUCLG1
CNOT11ENSG00000158435.33897.741802492.099000.6452012.0901010.25020HepG2SUPT6H
CNOT11ENSG00000158435.32156.514802514.86490-0.221801.932401.49850HepG2TIAL1
CNOT11ENSG00000158435.31605.290502537.48400-0.6606018.6861017.38840HepG2TRIM56
CNOT11ENSG00000158435.33150.719903720.81780-0.239902.152801.38920HepG2TUFM
CNOT11ENSG00000158435.33810.643903156.983000.271402.201201.63430HepG2U2AF1
CNOT11ENSG00000158435.34563.980403420.553100.4160010.647509.43900HepG2UPF1
CNOT11ENSG00000158435.32411.343902747.63760-0.188402.555201.90510HepG2ZC3H8
CNOT11ENSG00000158435.33129.216803761.94890-0.265705.566004.86020HepG2ZNF622
CNOT11ENSG00000158435.31442.715601750.30740-0.278803.318002.70720K562AGGF1
CNOT11ENSG00000158435.31677.860602639.40070-0.653609.820508.81910K562AQR
CNOT11ENSG00000158435.3955.008401263.74310-0.404104.945602.55060K562DDX24
CNOT11ENSG00000158435.33441.499002822.944100.285704.429103.63020K562DDX47
CNOT11ENSG00000158435.31484.732302074.68770-0.482708.351307.20370K562EIF2S2
CNOT11ENSG00000158435.31457.29710925.657700.654603.983502.75230K562EIF3A
CNOT11ENSG00000158435.3952.553701246.04020-0.387503.303902.41090K562EIF4A3
CNOT11ENSG00000158435.31290.200201641.29300-0.347202.453801.59450K562FTO
CNOT11ENSG00000158435.31193.767201588.77570-0.412403.532402.86830K562HNRNPC
CNOT11ENSG00000158435.31779.522102081.90340-0.226402.686101.88870K562MTPAP
CNOT11ENSG00000158435.3899.946601244.29150-0.467405.324203.62290K562NCBP2
CNOT11ENSG00000158435.31388.048401806.28820-0.380003.286702.70260K562PUS1
CNOT11ENSG00000158435.31752.082701293.173100.438103.441802.52840K562RPS19
CNOT11ENSG00000158435.31513.239101127.579300.424303.427102.30260K562RPS3
CNOT11ENSG00000158435.31777.890702338.41670-0.395408.299006.77640K562SRPK2
CNOT11ENSG00000158435.31202.604701517.13940-0.335202.622001.60490K562SRSF5
CNOT11ENSG00000158435.3948.639701229.26540-0.373902.307501.38330K562SUPV3L1
CNOT11ENSG00000158435.31228.418801568.45020-0.352503.440202.51270K562TIA1
CNOT11ENSG00000158435.31205.233601538.88540-0.352602.801001.70000K562TRA2A
CNOT11ENSG00000158435.31092.047001455.20610-0.414203.545002.44940K562TRIM56
CNOT11ENSG00000158435.31779.360801297.478700.455505.900504.72850K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNOT11 is not available on ENCORE database.





19 RBPs can affect the splicing of CNOT11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNOT11ENSG00000158435.3chr2+101874252101874417101869263101869940101879000101879153-0.093000.000000.00007excludedK562AKAP8L
SECNOT11ENSG00000158435.3chr2+101874252101874417101869263101869940101879000101879153-0.052000.001420.09853excludedK562XRCC6
SECNOT11ENSG00000158435.3chr2+101874252101874417101869263101869940101879000101879153-0.125000.000000.00000excludedK562PUS1
SECNOT11ENSG00000158435.3chr2+101874252101874417101869263101869940101879000101879153-0.094000.000010.00050excludedK562UTP18
SECNOT11ENSG00000158435.3chr2+101874252101874417101869263101869940101879000101879153-0.084000.000600.02552excludedK562HNRNPU
SECNOT11ENSG00000158435.3chr2+101874252101874417101869263101869940101879000101879153-0.077000.000010.00065excludedK562RBM15
SECNOT11ENSG00000158435.3chr2+101874252101874417101869263101869940101879000101879153-0.085000.000030.00172excludedK562AGGF1
MXECNOT11ENSG00000158435.3chr2+1018742521018744171018790001018791531018692631018699401018813061018815090.135000.000090.003161includedHepG2FTO
MXECNOT11ENSG00000158435.3chr2+101874252101874417101879000101879153101869263101869940101881306101881509-0.090000.000010.002372includedHepG2RBM5
MXECNOT11ENSG00000158435.3chr2+101874252101874417101879000101879153101869263101869940101881306101881509-0.069000.000370.016832includedHepG2TAF15
MXECNOT11ENSG00000158435.3chr2+1018790001018791531018813061018815091018742521018744171018831381018833410.100000.000140.028011includedHepG2SUGP2
MXECNOT11ENSG00000158435.3chr2+1018742521018744171018790001018791531018692631018699401018813061018815090.069000.000950.061281includedHepG2NOLC1
MXECNOT11ENSG00000158435.3chr2+101874252101874417101879000101879153101869263101869940101881306101881509-0.056000.001220.062662includedK562LARP7
MXECNOT11ENSG00000158435.3chr2+1018742521018744171018790001018791531018692631018699401018813061018815090.129000.000000.000001includedHepG2U2AF2
MXECNOT11ENSG00000158435.3chr2+1018742521018744171018790001018791531018692631018699401018813061018815090.057000.000000.000001includedHepG2RBFOX2
MXECNOT11ENSG00000158435.3chr2+101874252101874417101879000101879153101869263101869940101881306101881509-0.109000.000000.000002includedHepG2DROSHA
MXECNOT11ENSG00000158435.3chr2+1018742521018744171018790001018791531018692631018699401018813061018815090.096000.000000.000001includedHepG2HNRNPUL1
MXECNOT11ENSG00000158435.3chr2+1018742521018744171018790001018791531018692631018699401018813061018815090.081000.000060.005301includedK562SBDS
MXECNOT11ENSG00000158435.3chr2+1018742521018744171018790001018791531018692631018699401018813061018815090.120000.000010.001031includedK562DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNOT11 is not avaliable on ENCORE database.